EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSGALG00000005054 (Gene tree)
Gene ID: 422196
Gene Symbol: DKC1
Alias: -
Full Name: Gallus gallus dyskerin pseudouridine synthase 1 (DKC1)%2C mRNA.
Gene Type: protein_coding
Species: Gallus_gallus
Status: putative
Strand: Plus strand
Length: 9165 bases
Position: chr4:2116619-2125783
Accession: NM_001031115
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGALP00000008091	TruB_N	PF01509.18	5.1e-20	1	1
ENSGALP00000008091	PUA	PF01472.20	1.4e-17	1	1
ENSGALP00000008091	DKCLD	PF08068.12	1.2e-29	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGALT00000008105	-	2805	-	ENSGALP00000008091	516 (aa)	-	F1P0Q8

Gene Model

Click here to download ENSGALG00000005054's gene model file

Pathways

Pathway ID	Pathway Name	Source
gga03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSGALG00000005054's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGALG00000005054	DKC1	85	85.586	ENSG00000130826	DKC1	99	89.320	Homo_sapiens
ENSGALG00000005054	DKC1	89	81.264	ENSAPOG00000007799	dkc1	87	82.705	Acanthochromis_polyacanthus
ENSGALG00000005054	DKC1	97	79.084	ENSAMEG00000002776	DKC1	93	78.689	Ailuropoda_melanoleuca
ENSGALG00000005054	DKC1	87	80.804	ENSACIG00000022614	dkc1	93	81.306	Amphilophus_citrinellus
ENSGALG00000005054	DKC1	89	81.264	ENSAOCG00000013159	dkc1	90	82.127	Amphiprion_ocellaris
ENSGALG00000005054	DKC1	89	81.264	ENSAPEG00000002284	dkc1	90	82.127	Amphiprion_percula
ENSGALG00000005054	DKC1	85	80.045	ENSATEG00000013682	dkc1	84	81.050	Anabas_testudineus
ENSGALG00000005054	DKC1	99	81.923	ENSACAG00000015600	DKC1	78	86.696	Anolis_carolinensis
ENSGALG00000005054	DKC1	91	83.579	ENSANAG00000022732	DKC1	85	86.239	Aotus_nancymaae
ENSGALG00000005054	DKC1	84	81.881	ENSACLG00000015605	dkc1	81	88.161	Astatotilapia_calliptera
ENSGALG00000005054	DKC1	89	81.562	ENSAMXG00000017108	dkc1	88	80.269	Astyanax_mexicanus
ENSGALG00000005054	DKC1	86	85.235	ENSBTAG00000013045	DKC1	86	86.667	Bos_taurus
ENSGALG00000005054	DKC1	80	66.586	WBGene00010478	K01G5.5	97	64.120	Caenorhabditis_elegans
ENSGALG00000005054	DKC1	85	85.360	ENSCJAG00000004210	DKC1	85	86.468	Callithrix_jacchus
ENSGALG00000005054	DKC1	83	84.234	ENSCAFG00000019620	-	86	84.234	Canis_familiaris
ENSGALG00000005054	DKC1	83	75.286	ENSCAFG00000009311	-	86	75.286	Canis_familiaris
ENSGALG00000005054	DKC1	83	74.827	ENSCAFG00020009379	-	82	74.827	Canis_lupus_dingo
ENSGALG00000005054	DKC1	83	84.234	ENSCAFG00020008918	-	86	84.234	Canis_lupus_dingo
ENSGALG00000005054	DKC1	86	85.011	ENSCHIG00000017392	DKC1	86	86.437	Capra_hircus
ENSGALG00000005054	DKC1	85	84.361	ENSTSYG00000007681	DKC1	85	85.202	Carlito_syrichta
ENSGALG00000005054	DKC1	79	84.672	ENSCAPG00000003342	DKC1	90	86.650	Cavia_aperea
ENSGALG00000005054	DKC1	85	85.586	ENSCPOG00000008825	DKC1	85	86.697	Cavia_porcellus
ENSGALG00000005054	DKC1	85	76.577	ENSCCAG00000027418	DKC1	83	77.294	Cebus_capucinus
ENSGALG00000005054	DKC1	85	85.360	ENSCATG00000033602	DKC1	85	86.239	Cercocebus_atys
ENSGALG00000005054	DKC1	85	86.036	ENSCLAG00000000720	DKC1	86	87.156	Chinchilla_lanigera
ENSGALG00000005054	DKC1	85	85.360	ENSCSAG00000006706	DKC1	85	86.239	Chlorocebus_sabaeus
ENSGALG00000005054	DKC1	100	86.127	ENSCPBG00000005858	DKC1	94	89.342	Chrysemys_picta_bellii
ENSGALG00000005054	DKC1	83	74.306	ENSCING00000004599	-	81	75.234	Ciona_intestinalis
ENSGALG00000005054	DKC1	80	76.202	ENSCSAVG00000010047	-	96	74.884	Ciona_savignyi
ENSGALG00000005054	DKC1	85	85.360	ENSCANG00000027987	DKC1	85	86.239	Colobus_angolensis_palliatus
ENSGALG00000005054	DKC1	85	85.102	ENSCGRG00001014574	-	84	86.374	Cricetulus_griseus_chok1gshd
ENSGALG00000005054	DKC1	73	69.393	ENSCGRG00001016789	-	79	70.190	Cricetulus_griseus_chok1gshd
ENSGALG00000005054	DKC1	73	69.393	ENSCGRG00000014809	-	77	70.190	Cricetulus_griseus_crigri
ENSGALG00000005054	DKC1	85	85.102	ENSCGRG00000016075	-	84	86.374	Cricetulus_griseus_crigri
ENSGALG00000005054	DKC1	85	80.909	ENSCSEG00000012633	dkc1	84	87.406	Cynoglossus_semilaevis
ENSGALG00000005054	DKC1	84	81.609	ENSCVAG00000010155	dkc1	82	83.372	Cyprinodon_variegatus
ENSGALG00000005054	DKC1	82	84.235	ENSDARG00000016484	dkc1	84	83.871	Danio_rerio
ENSGALG00000005054	DKC1	97	82.669	ENSDNOG00000004218	DKC1	96	82.271	Dasypus_novemcinctus
ENSGALG00000005054	DKC1	54	76.344	ENSDORG00000013566	-	92	76.344	Dipodomys_ordii
ENSGALG00000005054	DKC1	86	69.231	FBgn0259937	Nop60B	89	66.995	Drosophila_melanogaster
ENSGALG00000005054	DKC1	85	82.207	ENSETEG00000016095	DKC1	89	83.028	Echinops_telfairi
ENSGALG00000005054	DKC1	66	78.466	ENSEBUG00000015962	dkc1	99	82.253	Eptatretus_burgeri
ENSGALG00000005054	DKC1	51	60.985	ENSEBUG00000016062	dkc1	98	60.985	Eptatretus_burgeri
ENSGALG00000005054	DKC1	84	84.922	ENSEASG00005007484	DKC1	85	85.360	Equus_asinus_asinus
ENSGALG00000005054	DKC1	84	84.922	ENSECAG00000023524	DKC1	85	85.360	Equus_caballus
ENSGALG00000005054	DKC1	82	84.272	ENSEEUG00000003323	DKC1	100	84.742	Erinaceus_europaeus
ENSGALG00000005054	DKC1	89	81.602	ENSELUG00000014538	dkc1	88	82.719	Esox_lucius
ENSGALG00000005054	DKC1	83	86.175	ENSFCAG00000006577	DKC1	86	86.175	Felis_catus
ENSGALG00000005054	DKC1	86	93.126	ENSFALG00000011496	DKC1	94	91.278	Ficedula_albicollis
ENSGALG00000005054	DKC1	85	85.553	ENSFDAG00000002516	DKC1	86	86.697	Fukomys_damarensis
ENSGALG00000005054	DKC1	84	82.258	ENSFHEG00000004627	dkc1	88	80.266	Fundulus_heteroclitus
ENSGALG00000005054	DKC1	76	85.422	ENSGMOG00000017277	dkc1	100	85.422	Gadus_morhua
ENSGALG00000005054	DKC1	86	81.348	ENSGAFG00000011486	dkc1	72	83.217	Gambusia_affinis
ENSGALG00000005054	DKC1	77	87.121	ENSGACG00000004373	dkc1	96	88.754	Gasterosteus_aculeatus
ENSGALG00000005054	DKC1	100	87.091	ENSGAGG00000011330	DKC1	87	90.244	Gopherus_agassizii
ENSGALG00000005054	DKC1	85	85.586	ENSGGOG00000001045	DKC1	85	86.468	Gorilla_gorilla
ENSGALG00000005054	DKC1	89	79.956	ENSHBUG00000012436	dkc1	88	81.858	Haplochromis_burtoni
ENSGALG00000005054	DKC1	85	84.944	ENSHGLG00000000649	DKC1	84	86.437	Heterocephalus_glaber_female
ENSGALG00000005054	DKC1	85	84.944	ENSHGLG00100001153	DKC1	85	86.437	Heterocephalus_glaber_male
ENSGALG00000005054	DKC1	96	76.970	ENSHCOG00000021099	dkc1	88	82.040	Hippocampus_comes
ENSGALG00000005054	DKC1	89	81.385	ENSIPUG00000010309	dkc1	87	82.119	Ictalurus_punctatus
ENSGALG00000005054	DKC1	85	85.169	ENSSTOG00000001074	-	90	86.041	Ictidomys_tridecemlineatus
ENSGALG00000005054	DKC1	85	77.652	ENSSTOG00000020149	-	84	78.391	Ictidomys_tridecemlineatus
ENSGALG00000005054	DKC1	85	74.664	ENSSTOG00000011904	-	81	75.342	Ictidomys_tridecemlineatus
ENSGALG00000005054	DKC1	54	77.256	ENSJJAG00000010086	-	92	77.256	Jaculus_jaculus
ENSGALG00000005054	DKC1	84	81.293	ENSKMAG00000008010	dkc1	85	81.439	Kryptolebias_marmoratus
ENSGALG00000005054	DKC1	84	82.407	ENSLBEG00000019122	dkc1	91	81.153	Labrus_bergylta
ENSGALG00000005054	DKC1	95	82.004	ENSLACG00000014025	DKC1	91	89.447	Latimeria_chalumnae
ENSGALG00000005054	DKC1	89	81.169	ENSLOCG00000013713	dkc1	86	85.748	Lepisosteus_oculatus
ENSGALG00000005054	DKC1	85	84.910	ENSLAFG00000000221	DKC1	85	85.780	Loxodonta_africana
ENSGALG00000005054	DKC1	85	85.135	ENSMFAG00000032398	DKC1	73	86.009	Macaca_fascicularis
ENSGALG00000005054	DKC1	85	85.360	ENSMMUG00000005768	DKC1	85	86.239	Macaca_mulatta
ENSGALG00000005054	DKC1	85	85.360	ENSMNEG00000034503	DKC1	85	86.239	Macaca_nemestrina
ENSGALG00000005054	DKC1	85	85.360	ENSMLEG00000034422	DKC1	85	86.239	Mandrillus_leucophaeus
ENSGALG00000005054	DKC1	78	88.308	ENSMAMG00000005427	dkc1	90	88.308	Mastacembelus_armatus
ENSGALG00000005054	DKC1	89	80.174	ENSMZEG00005014503	dkc1	88	82.080	Maylandia_zebra
ENSGALG00000005054	DKC1	89	98.698	ENSMGAG00000009238	DKC1	100	98.698	Meleagris_gallopavo
ENSGALG00000005054	DKC1	58	73.667	ENSMAUG00000016454	-	92	76.344	Mesocricetus_auratus
ENSGALG00000005054	DKC1	78	75.550	ENSMICG00000002818	-	99	76.986	Microcebus_murinus
ENSGALG00000005054	DKC1	85	84.009	ENSMICG00000038751	-	87	84.897	Microcebus_murinus
ENSGALG00000005054	DKC1	54	73.477	ENSMOCG00000001169	-	92	73.477	Microtus_ochrogaster
ENSGALG00000005054	DKC1	77	87.970	ENSMMOG00000020348	dkc1	86	88.413	Mola_mola
ENSGALG00000005054	DKC1	84	84.028	ENSMODG00000009243	DKC1	75	84.028	Monodelphis_domestica
ENSGALG00000005054	DKC1	85	81.279	ENSMALG00000009454	dkc1	82	83.215	Monopterus_albus
ENSGALG00000005054	DKC1	84	73.884	MGP_CAROLIEiJ_G0033191	Dkc1	85	90.400	Mus_caroli
ENSGALG00000005054	DKC1	85	83.900	ENSMUSG00000031403	Dkc1	85	84.828	Mus_musculus
ENSGALG00000005054	DKC1	84	84.545	MGP_PahariEiJ_G0031735	Dkc1	85	85.057	Mus_pahari
ENSGALG00000005054	DKC1	85	83.900	MGP_SPRETEiJ_G0034351	Dkc1	85	84.828	Mus_spretus
ENSGALG00000005054	DKC1	85	84.222	ENSMPUG00000016136	DKC1	82	85.135	Mustela_putorius_furo
ENSGALG00000005054	DKC1	86	79.157	ENSMLUG00000011918	DKC1	84	81.007	Myotis_lucifugus
ENSGALG00000005054	DKC1	54	76.786	ENSNGAG00000015724	-	93	76.786	Nannospalax_galili
ENSGALG00000005054	DKC1	77	88.665	ENSNBRG00000005638	dkc1	80	88.665	Neolamprologus_brichardi
ENSGALG00000005054	DKC1	85	85.360	ENSNLEG00000014323	DKC1	85	86.239	Nomascus_leucogenys
ENSGALG00000005054	DKC1	84	81.019	ENSMEUG00000001066	DKC1	93	81.542	Notamacropus_eugenii
ENSGALG00000005054	DKC1	68	83.191	ENSOPRG00000005248	DKC1	70	83.191	Ochotona_princeps
ENSGALG00000005054	DKC1	54	77.143	ENSODEG00000000549	-	92	77.143	Octodon_degus
ENSGALG00000005054	DKC1	80	88.702	ENSODEG00000011816	-	85	87.615	Octodon_degus
ENSGALG00000005054	DKC1	95	77.189	ENSONIG00000013889	dkc1	88	82.301	Oreochromis_niloticus
ENSGALG00000005054	DKC1	64	63.450	ENSOANG00000022295	-	82	63.265	Ornithorhynchus_anatinus
ENSGALG00000005054	DKC1	90	85.897	ENSOANG00000008713	-	87	88.333	Ornithorhynchus_anatinus
ENSGALG00000005054	DKC1	85	85.586	ENSOCUG00000012646	DKC1	85	86.468	Oryctolagus_cuniculus
ENSGALG00000005054	DKC1	90	77.468	ENSORLG00000018748	dkc1	79	85.965	Oryzias_latipes
ENSGALG00000005054	DKC1	84	81.293	ENSOMEG00000005786	dkc1	82	85.356	Oryzias_melastigma
ENSGALG00000005054	DKC1	85	83.921	ENSOGAG00000003399	DKC1	85	84.753	Otolemur_garnettii
ENSGALG00000005054	DKC1	86	84.787	ENSOARG00000003047	DKC1	86	86.207	Ovis_aries
ENSGALG00000005054	DKC1	85	85.811	ENSPPAG00000023820	DKC1	85	86.697	Pan_paniscus
ENSGALG00000005054	DKC1	83	86.175	ENSPPRG00000009104	DKC1	86	86.175	Panthera_pardus
ENSGALG00000005054	DKC1	83	85.349	ENSPTIG00000017469	DKC1	85	85.349	Panthera_tigris_altaica
ENSGALG00000005054	DKC1	85	85.586	ENSPTRG00000022449	DKC1	85	86.468	Pan_troglodytes
ENSGALG00000005054	DKC1	85	85.586	ENSPTRG00000043416	-	74	86.468	Pan_troglodytes
ENSGALG00000005054	DKC1	85	85.360	ENSPANG00000011978	DKC1	85	86.239	Papio_anubis
ENSGALG00000005054	DKC1	85	84.703	ENSPKIG00000008443	dkc1	84	90.657	Paramormyrops_kingsleyae
ENSGALG00000005054	DKC1	69	94.413	ENSPSIG00000013765	DKC1	86	94.413	Pelodiscus_sinensis
ENSGALG00000005054	DKC1	85	75.556	ENSPMGG00000004097	dkc1	75	81.752	Periophthalmus_magnuspinnatus
ENSGALG00000005054	DKC1	83	65.038	ENSPEMG00000013348	Dkc1	82	51.025	Peromyscus_maniculatus_bairdii
ENSGALG00000005054	DKC1	86	84.045	ENSPCIG00000016706	DKC1	76	83.850	Phascolarctos_cinereus
ENSGALG00000005054	DKC1	86	81.348	ENSPFOG00000018653	dkc1	84	83.256	Poecilia_formosa
ENSGALG00000005054	DKC1	86	81.348	ENSPLAG00000003272	dkc1	76	83.256	Poecilia_latipinna
ENSGALG00000005054	DKC1	86	81.390	ENSPMEG00000010413	dkc1	84	83.256	Poecilia_mexicana
ENSGALG00000005054	DKC1	86	81.166	ENSPREG00000004100	dkc1	83	83.023	Poecilia_reticulata
ENSGALG00000005054	DKC1	85	85.586	ENSPPYG00000020892	DKC1	86	86.468	Pongo_abelii
ENSGALG00000005054	DKC1	72	88.140	ENSPCAG00000015034	DKC1	72	88.140	Procavia_capensis
ENSGALG00000005054	DKC1	85	86.036	ENSPCOG00000026874	DKC1	85	86.927	Propithecus_coquereli
ENSGALG00000005054	DKC1	86	83.784	ENSPVAG00000009222	DKC1	85	85.581	Pteropus_vampyrus
ENSGALG00000005054	DKC1	91	78.556	ENSPNYG00000020063	dkc1	86	83.410	Pundamilia_nyererei
ENSGALG00000005054	DKC1	89	81.779	ENSPNAG00000005780	dkc1	86	82.561	Pygocentrus_nattereri
ENSGALG00000005054	DKC1	91	78.059	ENSRNOG00000055562	Dkc1	85	81.881	Rattus_norvegicus
ENSGALG00000005054	DKC1	85	85.360	ENSRBIG00000028457	DKC1	73	86.239	Rhinopithecus_bieti
ENSGALG00000005054	DKC1	85	85.360	ENSRROG00000044780	DKC1	85	86.239	Rhinopithecus_roxellana
ENSGALG00000005054	DKC1	74	72.917	YLR175W	-	88	67.916	Saccharomyces_cerevisiae
ENSGALG00000005054	DKC1	84	85.682	ENSSBOG00000033746	DKC1	85	86.239	Saimiri_boliviensis_boliviensis
ENSGALG00000005054	DKC1	84	85.880	ENSSHAG00000002463	DKC1	91	85.880	Sarcophilus_harrisii
ENSGALG00000005054	DKC1	89	81.562	ENSSFOG00015009585	dkc1	87	83.820	Scleropages_formosus
ENSGALG00000005054	DKC1	86	81.264	ENSSMAG00000002552	dkc1	87	82.176	Scophthalmus_maximus
ENSGALG00000005054	DKC1	92	78.526	ENSSDUG00000009963	dkc1	86	82.658	Seriola_dumerili
ENSGALG00000005054	DKC1	90	80.430	ENSSLDG00000019342	dkc1	90	83.641	Seriola_lalandi_dorsalis
ENSGALG00000005054	DKC1	84	80.000	ENSSARG00000001822	DKC1	87	80.410	Sorex_araneus
ENSGALG00000005054	DKC1	100	83.712	ENSSPUG00000018907	DKC1	88	86.985	Sphenodon_punctatus
ENSGALG00000005054	DKC1	84	82.910	ENSSPAG00000002585	dkc1	80	83.256	Stegastes_partitus
ENSGALG00000005054	DKC1	78	89.000	ENSSSCG00000012823	DKC1	89	86.150	Sus_scrofa
ENSGALG00000005054	DKC1	89	94.143	ENSTGUG00000006781	DKC1	95	95.195	Taeniopygia_guttata
ENSGALG00000005054	DKC1	89	78.867	ENSTRUG00000004413	dkc1	85	83.916	Takifugu_rubripes
ENSGALG00000005054	DKC1	95	63.434	ENSTNIG00000002582	dkc1	95	63.878	Tetraodon_nigroviridis
ENSGALG00000005054	DKC1	57	84.281	ENSTBEG00000011262	DKC1	84	83.987	Tupaia_belangeri
ENSGALG00000005054	DKC1	54	90.614	ENSTTRG00000008089	DKC1	55	90.614	Tursiops_truncatus
ENSGALG00000005054	DKC1	91	79.830	ENSUAMG00000022721	DKC1	90	87.089	Ursus_americanus
ENSGALG00000005054	DKC1	91	79.406	ENSUMAG00000016899	DKC1	98	85.396	Ursus_maritimus
ENSGALG00000005054	DKC1	83	83.149	ENSVVUG00000020734	-	78	83.149	Vulpes_vulpes
ENSGALG00000005054	DKC1	84	69.977	ENSVVUG00000021671	-	78	71.360	Vulpes_vulpes
ENSGALG00000005054	DKC1	96	74.612	ENSXETG00000032517	DKC1	88	83.186	Xenopus_tropicalis
ENSGALG00000005054	DKC1	86	81.166	ENSXCOG00000005498	dkc1	90	83.023	Xiphophorus_couchianus
ENSGALG00000005054	DKC1	86	80.942	ENSXMAG00000004919	dkc1	85	82.791	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000455	enzyme-directed rRNA pseudouridine synthesis	-	ISS	Process
GO:0000495	box H/ACA snoRNA 3'-end processing	21873635.	IBA	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0005654	nucleoplasm	-	TAS	Component
GO:0005697	telomerase holoenzyme complex	-	ISS	Component
GO:0007004	telomere maintenance via telomerase	-	ISS	Process
GO:0007004	telomere maintenance via telomerase	-	TAS	Process
GO:0009982	pseudouridine synthase activity	21873635.	IBA	Function
GO:0009982	pseudouridine synthase activity	-	ISS	Function
GO:0015030	Cajal body	-	IEA	Component
GO:0031118	rRNA pseudouridine synthesis	21873635.	IBA	Process
GO:0031120	snRNA pseudouridine synthesis	21873635.	IBA	Process
GO:0031429	box H/ACA snoRNP complex	21873635.	IBA	Component
GO:1990481	mRNA pseudouridine synthesis	21873635.	IBA	Process