EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSGALG00000005525 (Gene tree)
Gene ID: 772264
Gene Symbol: SRSF1
Alias: SFRS1
Full Name: Gallus gallus serine and arginine rich splicing factor 1 (SRSF1)%2C mRNA.
Gene Type: protein_coding
Species: Gallus_gallus
Status: putative
Strand: Plus strand
Length: 3609 bases
Position: chr19:8854438-8858046
Accession: NM_001113741
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGALP00000038262	RRM_1	PF00076.22	1.4e-33	1	2
ENSGALP00000038262	RRM_1	PF00076.22	1.4e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGALT00000039052	-	2799	-	ENSGALP00000038262	248 (aa)	-	F1NQW8

Gene Model

Click here to download ENSGALG00000005525's gene model file

Pathways

Pathway ID	Pathway Name	Source
gga03040	Spliceosome	KEGG
gga05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSGALG00000005525's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGALG00000005525	SRSF1	100	98.790	ENSG00000136450	SRSF1	100	100.000	Homo_sapiens
ENSGALG00000005525	SRSF1	79	89.655	ENSAPOG00000008542	-	81	88.177	Acanthochromis_polyacanthus
ENSGALG00000005525	SRSF1	78	91.192	ENSAPOG00000002748	-	78	88.601	Acanthochromis_polyacanthus
ENSGALG00000005525	SRSF1	100	95.968	ENSAMEG00000002635	SRSF1	100	95.968	Ailuropoda_melanoleuca
ENSGALG00000005525	SRSF1	78	91.192	ENSACIG00000008091	srsf1a	83	89.119	Amphilophus_citrinellus
ENSGALG00000005525	SRSF1	78	91.710	ENSAOCG00000010671	-	83	89.637	Amphiprion_ocellaris
ENSGALG00000005525	SRSF1	79	89.655	ENSAOCG00000000337	-	82	88.177	Amphiprion_ocellaris
ENSGALG00000005525	SRSF1	79	89.655	ENSAPEG00000023352	-	81	88.177	Amphiprion_percula
ENSGALG00000005525	SRSF1	78	91.710	ENSAPEG00000009915	-	83	89.637	Amphiprion_percula
ENSGALG00000005525	SRSF1	78	91.710	ENSATEG00000022403	-	77	89.637	Anabas_testudineus
ENSGALG00000005525	SRSF1	82	85.714	ENSATEG00000021567	-	81	87.310	Anabas_testudineus
ENSGALG00000005525	SRSF1	100	99.597	ENSACAG00000005542	-	100	99.597	Anolis_carolinensis
ENSGALG00000005525	SRSF1	81	72.000	ENSANAG00000025417	-	75	70.051	Aotus_nancymaae
ENSGALG00000005525	SRSF1	99	98.780	ENSANAG00000020583	-	99	98.611	Aotus_nancymaae
ENSGALG00000005525	SRSF1	74	86.408	ENSAMXG00000024373	-	94	85.990	Astyanax_mexicanus
ENSGALG00000005525	SRSF1	94	92.887	ENSAMXG00000035996	srsf1a	79	94.472	Astyanax_mexicanus
ENSGALG00000005525	SRSF1	100	98.790	ENSBTAG00000014766	SRSF1	100	98.790	Bos_taurus
ENSGALG00000005525	SRSF1	79	90.306	ENSCJAG00000008111	-	88	89.848	Callithrix_jacchus
ENSGALG00000005525	SRSF1	99	98.780	ENSCJAG00000041713	-	99	98.611	Callithrix_jacchus
ENSGALG00000005525	SRSF1	99	98.780	ENSCAFG00000017430	SRSF1	97	98.780	Canis_familiaris
ENSGALG00000005525	SRSF1	99	98.780	ENSCAFG00020025632	-	97	98.780	Canis_lupus_dingo
ENSGALG00000005525	SRSF1	100	98.790	ENSCHIG00000010787	SRSF1	100	98.790	Capra_hircus
ENSGALG00000005525	SRSF1	99	98.780	ENSTSYG00000013899	-	99	98.611	Carlito_syrichta
ENSGALG00000005525	SRSF1	100	98.790	ENSCPOG00000032681	-	100	98.790	Cavia_porcellus
ENSGALG00000005525	SRSF1	100	98.790	ENSCCAG00000029484	-	100	98.790	Cebus_capucinus
ENSGALG00000005525	SRSF1	99	98.780	ENSCATG00000042294	-	99	98.611	Cercocebus_atys
ENSGALG00000005525	SRSF1	100	98.790	ENSCLAG00000014707	-	100	98.790	Chinchilla_lanigera
ENSGALG00000005525	SRSF1	99	97.967	ENSCSAG00000005642	-	97	97.967	Chlorocebus_sabaeus
ENSGALG00000005525	SRSF1	100	98.790	ENSCHOG00000001899	SRSF1	100	98.790	Choloepus_hoffmanni
ENSGALG00000005525	SRSF1	100	100.000	ENSCPBG00000009851	-	100	100.000	Chrysemys_picta_bellii
ENSGALG00000005525	SRSF1	99	98.780	ENSCANG00000029726	-	99	98.611	Colobus_angolensis_palliatus
ENSGALG00000005525	SRSF1	99	98.780	ENSCGRG00001000670	Srsf1	97	98.780	Cricetulus_griseus_chok1gshd
ENSGALG00000005525	SRSF1	100	98.790	ENSCGRG00000005590	Srsf1	100	98.790	Cricetulus_griseus_crigri
ENSGALG00000005525	SRSF1	78	92.857	ENSCSEG00000014272	-	81	88.083	Cynoglossus_semilaevis
ENSGALG00000005525	SRSF1	79	83.491	ENSCSEG00000009973	-	81	82.547	Cynoglossus_semilaevis
ENSGALG00000005525	SRSF1	78	89.231	ENSCVAG00000005458	-	91	89.071	Cyprinodon_variegatus
ENSGALG00000005525	SRSF1	78	91.710	ENSCVAG00000018617	-	78	89.637	Cyprinodon_variegatus
ENSGALG00000005525	SRSF1	99	97.959	ENSDARG00000017843	srsf1b	99	97.959	Danio_rerio
ENSGALG00000005525	SRSF1	99	93.333	ENSDARG00000057691	srsf1a	99	93.333	Danio_rerio
ENSGALG00000005525	SRSF1	99	98.780	ENSDNOG00000011737	-	97	98.780	Dasypus_novemcinctus
ENSGALG00000005525	SRSF1	100	98.790	ENSDORG00000015082	Srsf1	100	98.790	Dipodomys_ordii
ENSGALG00000005525	SRSF1	74	97.283	ENSETEG00000005349	-	63	97.283	Echinops_telfairi
ENSGALG00000005525	SRSF1	99	98.780	ENSEASG00005002922	-	97	98.780	Equus_asinus_asinus
ENSGALG00000005525	SRSF1	100	98.790	ENSECAG00000016654	SRSF1	100	98.790	Equus_caballus
ENSGALG00000005525	SRSF1	74	98.370	ENSEEUG00000009255	-	63	98.370	Erinaceus_europaeus
ENSGALG00000005525	SRSF1	78	94.845	ENSELUG00000021646	srsf1a	77	91.237	Esox_lucius
ENSGALG00000005525	SRSF1	99	98.780	ENSFCAG00000002250	-	97	98.780	Felis_catus
ENSGALG00000005525	SRSF1	99	82.927	ENSFALG00000005062	-	97	82.927	Ficedula_albicollis
ENSGALG00000005525	SRSF1	100	98.790	ENSFDAG00000010646	-	100	98.790	Fukomys_damarensis
ENSGALG00000005525	SRSF1	78	91.710	ENSFHEG00000003174	srsf1a	83	89.637	Fundulus_heteroclitus
ENSGALG00000005525	SRSF1	80	90.404	ENSGMOG00000014787	-	80	87.565	Gadus_morhua
ENSGALG00000005525	SRSF1	79	86.802	ENSGACG00000020621	srsf1b	80	84.772	Gasterosteus_aculeatus
ENSGALG00000005525	SRSF1	99	100.000	ENSGAGG00000022965	-	97	100.000	Gopherus_agassizii
ENSGALG00000005525	SRSF1	99	98.780	ENSGGOG00000004386	SRSF1	99	98.611	Gorilla_gorilla
ENSGALG00000005525	SRSF1	78	91.192	ENSHBUG00000016788	srsf1a	80	89.119	Haplochromis_burtoni
ENSGALG00000005525	SRSF1	87	98.605	ENSHGLG00000000669	-	100	98.605	Heterocephalus_glaber_female
ENSGALG00000005525	SRSF1	87	98.605	ENSHGLG00000000600	-	100	98.605	Heterocephalus_glaber_female
ENSGALG00000005525	SRSF1	100	98.790	ENSHGLG00100016906	-	100	98.790	Heterocephalus_glaber_male
ENSGALG00000005525	SRSF1	78	86.802	ENSHCOG00000018918	srsf1a	77	88.325	Hippocampus_comes
ENSGALG00000005525	SRSF1	100	97.177	ENSIPUG00000008750	srsf1b	100	97.177	Ictalurus_punctatus
ENSGALG00000005525	SRSF1	94	92.469	ENSIPUG00000017039	srsf1a	79	94.975	Ictalurus_punctatus
ENSGALG00000005525	SRSF1	100	98.790	ENSSTOG00000000243	-	100	98.790	Ictidomys_tridecemlineatus
ENSGALG00000005525	SRSF1	100	98.790	ENSJJAG00000000102	-	100	98.790	Jaculus_jaculus
ENSGALG00000005525	SRSF1	51	92.126	ENSJJAG00000014464	-	95	88.189	Jaculus_jaculus
ENSGALG00000005525	SRSF1	78	91.710	ENSKMAG00000019232	srsf1a	78	88.083	Kryptolebias_marmoratus
ENSGALG00000005525	SRSF1	78	92.746	ENSLBEG00000020864	-	83	90.674	Labrus_bergylta
ENSGALG00000005525	SRSF1	79	86.000	ENSLBEG00000015294	-	80	87.000	Labrus_bergylta
ENSGALG00000005525	SRSF1	99	97.143	ENSLACG00000014160	srsf1a	92	97.143	Latimeria_chalumnae
ENSGALG00000005525	SRSF1	100	98.387	ENSLOCG00000005994	srsf1a	100	98.387	Lepisosteus_oculatus
ENSGALG00000005525	SRSF1	100	98.790	ENSLAFG00000025743	SRSF1	100	98.790	Loxodonta_africana
ENSGALG00000005525	SRSF1	100	98.790	ENSMFAG00000040003	-	100	98.790	Macaca_fascicularis
ENSGALG00000005525	SRSF1	100	95.161	ENSMMUG00000003260	-	95	95.408	Macaca_mulatta
ENSGALG00000005525	SRSF1	99	98.780	ENSMMUG00000004725	SRSF1	99	98.611	Macaca_mulatta
ENSGALG00000005525	SRSF1	100	94.758	ENSMNEG00000015983	-	78	94.924	Macaca_nemestrina
ENSGALG00000005525	SRSF1	99	98.780	ENSMNEG00000027680	-	99	98.611	Macaca_nemestrina
ENSGALG00000005525	SRSF1	100	91.532	ENSMLEG00000015243	-	77	90.863	Mandrillus_leucophaeus
ENSGALG00000005525	SRSF1	100	98.790	ENSMLEG00000040509	SRSF1	100	98.790	Mandrillus_leucophaeus
ENSGALG00000005525	SRSF1	79	88.832	ENSMAMG00000019687	-	80	86.294	Mastacembelus_armatus
ENSGALG00000005525	SRSF1	78	91.710	ENSMAMG00000018454	-	78	89.637	Mastacembelus_armatus
ENSGALG00000005525	SRSF1	79	94.416	ENSMAMG00000019691	-	81	91.371	Mastacembelus_armatus
ENSGALG00000005525	SRSF1	100	98.790	ENSMAUG00000021845	Srsf1	100	98.790	Mesocricetus_auratus
ENSGALG00000005525	SRSF1	99	98.780	ENSMICG00000013639	-	99	98.611	Microcebus_murinus
ENSGALG00000005525	SRSF1	100	98.790	ENSMOCG00000001996	Srsf1	100	98.790	Microtus_ochrogaster
ENSGALG00000005525	SRSF1	78	92.228	ENSMMOG00000014354	srsf1a	83	90.155	Mola_mola
ENSGALG00000005525	SRSF1	74	98.378	ENSMODG00000014781	-	63	98.378	Monodelphis_domestica
ENSGALG00000005525	SRSF1	78	91.192	ENSMALG00000017129	-	75	88.083	Monopterus_albus
ENSGALG00000005525	SRSF1	82	81.373	ENSMALG00000007763	-	79	81.218	Monopterus_albus
ENSGALG00000005525	SRSF1	100	98.790	MGP_CAROLIEiJ_G0016943	Srsf1	100	98.790	Mus_caroli
ENSGALG00000005525	SRSF1	100	98.790	ENSMUSG00000018379	Srsf1	100	98.790	Mus_musculus
ENSGALG00000005525	SRSF1	100	98.790	MGP_PahariEiJ_G0018074	Srsf1	100	98.790	Mus_pahari
ENSGALG00000005525	SRSF1	100	98.790	MGP_SPRETEiJ_G0017790	Srsf1	100	98.790	Mus_spretus
ENSGALG00000005525	SRSF1	100	98.790	ENSMPUG00000015369	SRSF1	100	98.790	Mustela_putorius_furo
ENSGALG00000005525	SRSF1	82	89.655	ENSMLUG00000023995	-	79	88.325	Myotis_lucifugus
ENSGALG00000005525	SRSF1	100	98.790	ENSMLUG00000011040	SRSF1	100	98.790	Myotis_lucifugus
ENSGALG00000005525	SRSF1	100	98.790	ENSNGAG00000011395	Srsf1	100	98.790	Nannospalax_galili
ENSGALG00000005525	SRSF1	100	79.839	ENSNBRG00000008041	srsf1b	80	82.741	Neolamprologus_brichardi
ENSGALG00000005525	SRSF1	99	98.780	ENSNLEG00000008088	-	99	98.611	Nomascus_leucogenys
ENSGALG00000005525	SRSF1	51	98.425	ENSMEUG00000002783	-	100	98.425	Notamacropus_eugenii
ENSGALG00000005525	SRSF1	74	98.361	ENSOPRG00000001234	-	100	98.361	Ochotona_princeps
ENSGALG00000005525	SRSF1	100	98.387	ENSODEG00000011481	-	100	98.387	Octodon_degus
ENSGALG00000005525	SRSF1	78	91.192	ENSONIG00000013160	-	77	89.119	Oreochromis_niloticus
ENSGALG00000005525	SRSF1	96	91.139	ENSONIG00000004860	-	81	91.371	Oreochromis_niloticus
ENSGALG00000005525	SRSF1	100	69.841	ENSOCUG00000010894	-	77	71.282	Oryctolagus_cuniculus
ENSGALG00000005525	SRSF1	78	91.710	ENSORLG00000004580	srsf1a	78	89.637	Oryzias_latipes
ENSGALG00000005525	SRSF1	78	91.710	ENSORLG00020009456	srsf1a	83	89.637	Oryzias_latipes_hni
ENSGALG00000005525	SRSF1	78	91.710	ENSORLG00015014384	srsf1a	83	89.637	Oryzias_latipes_hsok
ENSGALG00000005525	SRSF1	71	89.773	ENSOMEG00000004106	srsf1a	71	87.500	Oryzias_melastigma
ENSGALG00000005525	SRSF1	100	98.790	ENSOGAG00000025950	-	100	98.790	Otolemur_garnettii
ENSGALG00000005525	SRSF1	100	93.952	ENSOARG00000008323	SRSF1	100	93.952	Ovis_aries
ENSGALG00000005525	SRSF1	100	98.790	ENSPPAG00000043403	-	100	98.790	Pan_paniscus
ENSGALG00000005525	SRSF1	100	98.790	ENSPPRG00000004238	-	100	98.790	Panthera_pardus
ENSGALG00000005525	SRSF1	99	98.780	ENSPTRG00000049077	SRSF1	99	98.611	Pan_troglodytes
ENSGALG00000005525	SRSF1	99	75.203	ENSPANG00000030275	-	75	69.388	Papio_anubis
ENSGALG00000005525	SRSF1	99	98.780	ENSPANG00000022305	-	99	98.611	Papio_anubis
ENSGALG00000005525	SRSF1	99	96.327	ENSPKIG00000007204	srsf1a	99	96.327	Paramormyrops_kingsleyae
ENSGALG00000005525	SRSF1	100	97.177	ENSPKIG00000012857	srsf1b	100	97.177	Paramormyrops_kingsleyae
ENSGALG00000005525	SRSF1	79	92.462	ENSPSIG00000009000	-	78	100.000	Pelodiscus_sinensis
ENSGALG00000005525	SRSF1	78	88.889	ENSPMGG00000013112	-	79	90.909	Periophthalmus_magnuspinnatus
ENSGALG00000005525	SRSF1	96	84.519	ENSPMGG00000005467	-	78	83.938	Periophthalmus_magnuspinnatus
ENSGALG00000005525	SRSF1	100	98.790	ENSPEMG00000021416	Srsf1	100	98.790	Peromyscus_maniculatus_bairdii
ENSGALG00000005525	SRSF1	100	98.795	ENSPCIG00000006076	-	100	98.795	Phascolarctos_cinereus
ENSGALG00000005525	SRSF1	79	89.394	ENSPFOG00000018325	-	70	89.175	Poecilia_formosa
ENSGALG00000005525	SRSF1	79	89.394	ENSPLAG00000008416	srsf1b	79	89.175	Poecilia_latipinna
ENSGALG00000005525	SRSF1	50	89.431	ENSPMEG00000020607	-	98	87.805	Poecilia_mexicana
ENSGALG00000005525	SRSF1	50	89.431	ENSPMEG00000014312	-	98	87.805	Poecilia_mexicana
ENSGALG00000005525	SRSF1	79	89.394	ENSPMEG00000002388	-	79	89.175	Poecilia_mexicana
ENSGALG00000005525	SRSF1	78	91.710	ENSPREG00000009667	srsf1a	78	89.637	Poecilia_reticulata
ENSGALG00000005525	SRSF1	100	98.790	ENSPPYG00000008240	SRSF1	100	98.790	Pongo_abelii
ENSGALG00000005525	SRSF1	100	98.790	ENSPCAG00000005199	SRSF1	100	98.790	Procavia_capensis
ENSGALG00000005525	SRSF1	80	76.238	ENSPCOG00000025736	-	95	76.020	Propithecus_coquereli
ENSGALG00000005525	SRSF1	100	98.790	ENSPCOG00000023654	-	100	98.790	Propithecus_coquereli
ENSGALG00000005525	SRSF1	75	100.000	ENSPVAG00000000519	-	75	100.000	Pteropus_vampyrus
ENSGALG00000005525	SRSF1	94	94.444	ENSPNAG00000022241	srsf1a	78	91.753	Pygocentrus_nattereri
ENSGALG00000005525	SRSF1	100	95.565	ENSPNAG00000014601	srsf1b	100	95.565	Pygocentrus_nattereri
ENSGALG00000005525	SRSF1	100	98.790	ENSRNOG00000050323	Srsf1	100	98.790	Rattus_norvegicus
ENSGALG00000005525	SRSF1	99	98.780	ENSRBIG00000034445	-	99	98.611	Rhinopithecus_bieti
ENSGALG00000005525	SRSF1	100	98.790	ENSRROG00000041506	-	100	98.790	Rhinopithecus_roxellana
ENSGALG00000005525	SRSF1	100	98.790	ENSSBOG00000025377	-	100	98.790	Saimiri_boliviensis_boliviensis
ENSGALG00000005525	SRSF1	100	98.795	ENSSHAG00000002552	-	100	98.795	Sarcophilus_harrisii
ENSGALG00000005525	SRSF1	99	97.571	ENSSFOG00015004800	srsf1a	99	97.571	Scleropages_formosus
ENSGALG00000005525	SRSF1	94	87.500	ENSSMAG00000009719	-	80	86.765	Scophthalmus_maximus
ENSGALG00000005525	SRSF1	78	92.228	ENSSMAG00000007018	-	78	89.637	Scophthalmus_maximus
ENSGALG00000005525	SRSF1	100	76.494	ENSSDUG00000003929	-	84	84.500	Seriola_dumerili
ENSGALG00000005525	SRSF1	78	92.746	ENSSDUG00000011303	-	83	90.674	Seriola_dumerili
ENSGALG00000005525	SRSF1	95	77.119	ENSSLDG00000016895	-	78	83.957	Seriola_lalandi_dorsalis
ENSGALG00000005525	SRSF1	79	83.333	ENSSLDG00000016868	-	78	83.333	Seriola_lalandi_dorsalis
ENSGALG00000005525	SRSF1	78	92.746	ENSSLDG00000010543	-	78	90.674	Seriola_lalandi_dorsalis
ENSGALG00000005525	SRSF1	74	98.370	ENSSARG00000010949	-	63	98.370	Sorex_araneus
ENSGALG00000005525	SRSF1	99	100.000	ENSSPUG00000000804	-	97	100.000	Sphenodon_punctatus
ENSGALG00000005525	SRSF1	79	86.603	ENSSPAG00000014152	-	81	85.646	Stegastes_partitus
ENSGALG00000005525	SRSF1	78	92.228	ENSSPAG00000022562	-	78	90.155	Stegastes_partitus
ENSGALG00000005525	SRSF1	100	98.790	ENSSSCG00000017626	-	100	98.790	Sus_scrofa
ENSGALG00000005525	SRSF1	74	100.000	ENSTGUG00000008416	-	100	100.000	Taeniopygia_guttata
ENSGALG00000005525	SRSF1	78	91.192	ENSTRUG00000003691	srsf1a	78	89.119	Takifugu_rubripes
ENSGALG00000005525	SRSF1	78	91.192	ENSTNIG00000016223	srsf1a	77	89.119	Tetraodon_nigroviridis
ENSGALG00000005525	SRSF1	74	96.739	ENSTBEG00000015378	-	63	96.739	Tupaia_belangeri
ENSGALG00000005525	SRSF1	74	98.361	ENSTTRG00000007310	SRSF1	100	98.361	Tursiops_truncatus
ENSGALG00000005525	SRSF1	100	98.790	ENSUAMG00000009858	SRSF1	100	98.790	Ursus_americanus
ENSGALG00000005525	SRSF1	99	98.780	ENSUMAG00000000455	-	97	98.780	Ursus_maritimus
ENSGALG00000005525	SRSF1	100	98.387	ENSVPAG00000010094	SRSF1	100	98.387	Vicugna_pacos
ENSGALG00000005525	SRSF1	99	98.780	ENSVVUG00000011882	-	97	98.780	Vulpes_vulpes
ENSGALG00000005525	SRSF1	100	96.371	ENSXETG00000008954	srsf1	100	91.760	Xenopus_tropicalis
ENSGALG00000005525	SRSF1	78	91.710	ENSXMAG00000011766	srsf1a	78	89.637	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0016607	nuclear speck	21873635.	IBA	Component
GO:0045292	mRNA cis splicing, via spliceosome	21873635.	IBA	Process