EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSGALG00000007058 (Gene tree)
Gene ID: 424897
Gene Symbol: LSG1
Alias: -
Full Name: large 60S subunit nuclear export GTPase 1
Gene Type: protein_coding
Species: Gallus_gallus
Status: putative
Strand: Plus strand
Length: 12330 bases
Position: chr9:12975136-12987465
Accession: 25652
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGALP00000073018	MMR_HSR1	PF01926.23	2e-14	1	1
ENSGALP00000039544	MMR_HSR1	PF01926.23	2.3e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGALT00000040344	LSG1-201	2744	-	ENSGALP00000039544	747 (aa)	-	F1P2L5
ENSGALT00000108173	LSG1-202	2368	-	ENSGALP00000073018	699 (aa)	-	-

Gene Model

Click here to download ENSGALG00000007058's gene model file

Pathways

Pathway ID	Pathway Name	Source
gga03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSGALG00000007058's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGALG00000007058	LSG1	87	63.363	ENSG00000041802	LSG1	99	64.750	Homo_sapiens
ENSGALG00000007058	LSG1	87	61.480	ENSAPOG00000009694	lsg1	99	61.145	Acanthochromis_polyacanthus
ENSGALG00000007058	LSG1	87	64.211	ENSAMEG00000009343	LSG1	99	63.910	Ailuropoda_melanoleuca
ENSGALG00000007058	LSG1	86	61.787	ENSACIG00000012406	lsg1	99	60.633	Amphilophus_citrinellus
ENSGALG00000007058	LSG1	87	61.329	ENSAOCG00000016066	lsg1	99	61.353	Amphiprion_ocellaris
ENSGALG00000007058	LSG1	87	61.027	ENSAPEG00000003252	lsg1	99	61.027	Amphiprion_percula
ENSGALG00000007058	LSG1	86	61.824	ENSATEG00000011794	lsg1	99	61.203	Anabas_testudineus
ENSGALG00000007058	LSG1	82	63.974	ENSACAG00000004222	LSG1	97	62.399	Anolis_carolinensis
ENSGALG00000007058	LSG1	87	63.609	ENSANAG00000021153	LSG1	99	64.902	Aotus_nancymaae
ENSGALG00000007058	LSG1	87	60.954	ENSACLG00000000520	lsg1	99	60.060	Astatotilapia_calliptera
ENSGALG00000007058	LSG1	87	60.720	ENSAMXG00000008271	lsg1	100	60.060	Astyanax_mexicanus
ENSGALG00000007058	LSG1	87	64.297	ENSBTAG00000008461	LSG1	99	63.514	Bos_taurus
ENSGALG00000007058	LSG1	69	48.341	WBGene00016907	C53H9.2	91	52.555	Caenorhabditis_elegans
ENSGALG00000007058	LSG1	87	63.008	ENSCJAG00000013962	LSG1	99	64.448	Callithrix_jacchus
ENSGALG00000007058	LSG1	82	65.203	ENSCAFG00000013445	LSG1	97	65.466	Canis_familiaris
ENSGALG00000007058	LSG1	87	62.930	ENSCAFG00020002216	LSG1	98	63.403	Canis_lupus_dingo
ENSGALG00000007058	LSG1	87	64.750	ENSCHIG00000015769	LSG1	99	64.565	Capra_hircus
ENSGALG00000007058	LSG1	87	63.459	ENSTSYG00000001447	LSG1	99	63.843	Carlito_syrichta
ENSGALG00000007058	LSG1	82	63.987	ENSCAPG00000009856	LSG1	97	62.684	Cavia_aperea
ENSGALG00000007058	LSG1	87	63.609	ENSCCAG00000035744	LSG1	99	63.994	Cebus_capucinus
ENSGALG00000007058	LSG1	94	61.528	ENSCATG00000042060	LSG1	99	63.540	Cercocebus_atys
ENSGALG00000007058	LSG1	94	61.227	ENSCSAG00000008796	LSG1	99	61.646	Chlorocebus_sabaeus
ENSGALG00000007058	LSG1	87	72.644	ENSCPBG00000015941	LSG1	83	71.429	Chrysemys_picta_bellii
ENSGALG00000007058	LSG1	62	62.827	ENSCING00000007079	-	93	62.827	Ciona_intestinalis
ENSGALG00000007058	LSG1	65	63.021	ENSCSAVG00000002514	-	92	55.217	Ciona_savignyi
ENSGALG00000007058	LSG1	87	62.913	ENSCANG00000030709	LSG1	99	64.297	Colobus_angolensis_palliatus
ENSGALG00000007058	LSG1	87	64.653	ENSCGRG00001019846	Lsg1	99	63.142	Cricetulus_griseus_chok1gshd
ENSGALG00000007058	LSG1	87	64.653	ENSCGRG00000014617	Lsg1	99	63.142	Cricetulus_griseus_crigri
ENSGALG00000007058	LSG1	86	61.077	ENSCSEG00000008522	lsg1	99	59.581	Cynoglossus_semilaevis
ENSGALG00000007058	LSG1	86	61.646	ENSCVAG00000002484	lsg1	99	61.631	Cyprinodon_variegatus
ENSGALG00000007058	LSG1	87	62.462	ENSDARG00000015352	lsg1	99	61.261	Danio_rerio
ENSGALG00000007058	LSG1	87	63.568	ENSDNOG00000006224	LSG1	99	62.874	Dasypus_novemcinctus
ENSGALG00000007058	LSG1	71	53.719	FBgn0266284	Ns3	91	52.157	Drosophila_melanogaster
ENSGALG00000007058	LSG1	77	59.808	ENSETEG00000003888	LSG1	89	59.125	Echinops_telfairi
ENSGALG00000007058	LSG1	79	54.470	ENSEBUG00000003119	lsg1	85	54.000	Eptatretus_burgeri
ENSGALG00000007058	LSG1	87	65.204	ENSEASG00005000678	LSG1	99	65.507	Equus_asinus_asinus
ENSGALG00000007058	LSG1	87	65.356	ENSECAG00000017659	LSG1	99	65.658	Equus_caballus
ENSGALG00000007058	LSG1	67	65.812	ENSEEUG00000015217	LSG1	75	66.379	Erinaceus_europaeus
ENSGALG00000007058	LSG1	87	59.639	ENSELUG00000023973	lsg1	99	59.220	Esox_lucius
ENSGALG00000007058	LSG1	87	64.653	ENSFCAG00000024957	LSG1	99	64.448	Felis_catus
ENSGALG00000007058	LSG1	87	83.614	ENSFALG00000007210	LSG1	99	83.461	Ficedula_albicollis
ENSGALG00000007058	LSG1	87	63.389	ENSFDAG00000017373	LSG1	99	62.312	Fukomys_damarensis
ENSGALG00000007058	LSG1	86	60.274	ENSFHEG00000003680	lsg1	99	58.569	Fundulus_heteroclitus
ENSGALG00000007058	LSG1	73	67.763	ENSGMOG00000015834	lsg1	88	67.763	Gadus_morhua
ENSGALG00000007058	LSG1	86	60.653	ENSGAFG00000015831	lsg1	99	60.514	Gambusia_affinis
ENSGALG00000007058	LSG1	82	59.776	ENSGACG00000009323	lsg1	99	57.692	Gasterosteus_aculeatus
ENSGALG00000007058	LSG1	87	63.705	ENSGGOG00000000520	LSG1	99	64.145	Gorilla_gorilla
ENSGALG00000007058	LSG1	87	60.837	ENSHBUG00000005659	lsg1	99	60.542	Haplochromis_burtoni
ENSGALG00000007058	LSG1	87	61.469	ENSHGLG00000017390	LSG1	99	61.319	Heterocephalus_glaber_female
ENSGALG00000007058	LSG1	87	61.469	ENSHGLG00100018587	LSG1	99	61.319	Heterocephalus_glaber_male
ENSGALG00000007058	LSG1	86	60.217	ENSHCOG00000016848	lsg1	99	59.398	Hippocampus_comes
ENSGALG00000007058	LSG1	87	60.272	ENSIPUG00000008631	lsg1	99	60.241	Ictalurus_punctatus
ENSGALG00000007058	LSG1	67	63.419	ENSSTOG00000010234	LSG1	92	64.016	Ictidomys_tridecemlineatus
ENSGALG00000007058	LSG1	87	63.746	ENSJJAG00000015513	Lsg1	99	62.556	Jaculus_jaculus
ENSGALG00000007058	LSG1	86	59.571	ENSKMAG00000009681	lsg1	99	59.193	Kryptolebias_marmoratus
ENSGALG00000007058	LSG1	86	60.031	ENSLBEG00000024261	lsg1	99	59.758	Labrus_bergylta
ENSGALG00000007058	LSG1	87	64.511	ENSLACG00000013399	LSG1	99	63.952	Latimeria_chalumnae
ENSGALG00000007058	LSG1	86	63.174	ENSLOCG00000004918	lsg1	99	62.745	Lepisosteus_oculatus
ENSGALG00000007058	LSG1	87	64.199	ENSLAFG00000012919	-	99	63.389	Loxodonta_africana
ENSGALG00000007058	LSG1	94	61.528	ENSMFAG00000039903	LSG1	99	63.540	Macaca_fascicularis
ENSGALG00000007058	LSG1	87	64.157	ENSMMUG00000010708	LSG1	99	64.599	Macaca_mulatta
ENSGALG00000007058	LSG1	94	61.389	ENSMNEG00000031538	LSG1	99	63.389	Macaca_nemestrina
ENSGALG00000007058	LSG1	87	64.157	ENSMLEG00000041184	LSG1	99	64.599	Mandrillus_leucophaeus
ENSGALG00000007058	LSG1	87	59.607	ENSMAMG00000000470	lsg1	99	58.683	Mastacembelus_armatus
ENSGALG00000007058	LSG1	87	60.837	ENSMZEG00005017865	lsg1	99	60.542	Maylandia_zebra
ENSGALG00000007058	LSG1	79	96.769	ENSMGAG00000007050	LSG1	100	96.769	Meleagris_gallopavo
ENSGALG00000007058	LSG1	86	62.927	ENSMAUG00000016976	Lsg1	98	58.114	Mesocricetus_auratus
ENSGALG00000007058	LSG1	87	62.406	ENSMICG00000049087	LSG1	99	63.293	Microcebus_murinus
ENSGALG00000007058	LSG1	87	63.705	ENSMOCG00000022136	Lsg1	99	63.268	Microtus_ochrogaster
ENSGALG00000007058	LSG1	71	71.237	ENSMMOG00000008884	lsg1	95	71.237	Mola_mola
ENSGALG00000007058	LSG1	87	56.109	ENSMODG00000019828	LSG1	99	55.354	Monodelphis_domestica
ENSGALG00000007058	LSG1	87	65.658	MGP_CAROLIEiJ_G0020648	Lsg1	99	65.356	Mus_caroli
ENSGALG00000007058	LSG1	87	65.913	ENSMUSG00000022538	Lsg1	99	65.809	Mus_musculus
ENSGALG00000007058	LSG1	86	65.854	MGP_PahariEiJ_G0016352	Lsg1	99	65.120	Mus_pahari
ENSGALG00000007058	LSG1	87	66.214	MGP_SPRETEiJ_G0021544	Lsg1	99	66.063	Mus_spretus
ENSGALG00000007058	LSG1	87	63.142	ENSMPUG00000003734	LSG1	99	63.540	Mustela_putorius_furo
ENSGALG00000007058	LSG1	87	65.008	ENSMLUG00000012548	LSG1	99	64.371	Myotis_lucifugus
ENSGALG00000007058	LSG1	87	64.072	ENSNGAG00000021872	Lsg1	99	63.772	Nannospalax_galili
ENSGALG00000007058	LSG1	87	63.514	ENSNLEG00000008293	LSG1	99	63.690	Nomascus_leucogenys
ENSGALG00000007058	LSG1	60	67.010	ENSMEUG00000009041	-	82	67.010	Notamacropus_eugenii
ENSGALG00000007058	LSG1	87	60.994	ENSONIG00000002635	lsg1	99	60.629	Oreochromis_niloticus
ENSGALG00000007058	LSG1	82	69.106	ENSOANG00000012742	LSG1	96	67.047	Ornithorhynchus_anatinus
ENSGALG00000007058	LSG1	87	64.715	ENSOCUG00000004817	LSG1	99	63.447	Oryctolagus_cuniculus
ENSGALG00000007058	LSG1	86	60.187	ENSORLG00000007695	lsg1	99	59.758	Oryzias_latipes
ENSGALG00000007058	LSG1	86	60.031	ENSORLG00020016286	lsg1	99	59.455	Oryzias_latipes_hni
ENSGALG00000007058	LSG1	86	59.783	ENSORLG00015012025	lsg1	99	59.304	Oryzias_latipes_hsok
ENSGALG00000007058	LSG1	86	59.472	ENSOMEG00000022379	lsg1	99	58.584	Oryzias_melastigma
ENSGALG00000007058	LSG1	87	62.445	ENSOGAG00000003475	LSG1	99	62.930	Otolemur_garnettii
ENSGALG00000007058	LSG1	87	63.746	ENSOARG00000020403	LSG1	99	63.568	Ovis_aries
ENSGALG00000007058	LSG1	87	65.060	ENSPPAG00000029271	LSG1	99	64.599	Pan_paniscus
ENSGALG00000007058	LSG1	87	63.893	ENSPPRG00000010281	LSG1	99	63.690	Panthera_pardus
ENSGALG00000007058	LSG1	87	64.715	ENSPTIG00000010789	LSG1	99	64.511	Panthera_tigris_altaica
ENSGALG00000007058	LSG1	87	64.910	ENSPTRG00000015760	LSG1	99	64.448	Pan_troglodytes
ENSGALG00000007058	LSG1	94	61.528	ENSPANG00000018249	LSG1	99	63.540	Papio_anubis
ENSGALG00000007058	LSG1	87	60.000	ENSPKIG00000002895	lsg1	99	59.699	Paramormyrops_kingsleyae
ENSGALG00000007058	LSG1	84	67.239	ENSPSIG00000009821	LSG1	99	66.303	Pelodiscus_sinensis
ENSGALG00000007058	LSG1	82	63.533	ENSPMGG00000000931	lsg1	99	61.551	Periophthalmus_magnuspinnatus
ENSGALG00000007058	LSG1	87	65.564	ENSPEMG00000012082	-	99	64.857	Peromyscus_maniculatus_bairdii
ENSGALG00000007058	LSG1	87	58.929	ENSPMAG00000007451	lsg1	100	58.445	Petromyzon_marinus
ENSGALG00000007058	LSG1	87	65.445	ENSPCIG00000013890	LSG1	82	65.445	Phascolarctos_cinereus
ENSGALG00000007058	LSG1	86	61.431	ENSPFOG00000021882	lsg1	99	61.086	Poecilia_formosa
ENSGALG00000007058	LSG1	86	60.809	ENSPLAG00000019536	lsg1	99	60.483	Poecilia_latipinna
ENSGALG00000007058	LSG1	86	60.620	ENSPMEG00000017281	lsg1	99	60.301	Poecilia_mexicana
ENSGALG00000007058	LSG1	86	51.908	ENSPREG00000006048	lsg1	99	51.627	Poecilia_reticulata
ENSGALG00000007058	LSG1	86	64.262	ENSPPYG00000014425	LSG1	100	63.011	Pongo_abelii
ENSGALG00000007058	LSG1	78	57.418	ENSPCAG00000005511	LSG1	70	79.245	Procavia_capensis
ENSGALG00000007058	LSG1	87	63.158	ENSPCOG00000012360	LSG1	99	62.763	Propithecus_coquereli
ENSGALG00000007058	LSG1	87	60.954	ENSPNYG00000021994	lsg1	99	60.060	Pundamilia_nyererei
ENSGALG00000007058	LSG1	87	61.458	ENSPNAG00000015533	lsg1	99	61.237	Pygocentrus_nattereri
ENSGALG00000007058	LSG1	87	63.528	ENSRNOG00000001727	Lsg1	99	63.827	Rattus_norvegicus
ENSGALG00000007058	LSG1	87	62.202	ENSRBIG00000029053	LSG1	99	63.691	Rhinopithecus_bieti
ENSGALG00000007058	LSG1	87	62.202	ENSRROG00000037702	LSG1	99	63.691	Rhinopithecus_roxellana
ENSGALG00000007058	LSG1	67	50.481	YGL099W	LSG1	68	55.191	Saccharomyces_cerevisiae
ENSGALG00000007058	LSG1	87	63.910	ENSSBOG00000034938	LSG1	99	64.662	Saimiri_boliviensis_boliviensis
ENSGALG00000007058	LSG1	69	63.401	ENSSHAG00000003487	LSG1	99	62.804	Sarcophilus_harrisii
ENSGALG00000007058	LSG1	87	62.557	ENSSFOG00015008955	lsg1	100	59.970	Scleropages_formosus
ENSGALG00000007058	LSG1	86	61.240	ENSSDUG00000004622	lsg1	99	60.784	Seriola_dumerili
ENSGALG00000007058	LSG1	86	60.957	ENSSLDG00000010869	lsg1	99	60.514	Seriola_lalandi_dorsalis
ENSGALG00000007058	LSG1	61	72.174	ENSSARG00000012981	LSG1	69	72.174	Sorex_araneus
ENSGALG00000007058	LSG1	87	68.018	ENSSPUG00000016347	LSG1	99	66.216	Sphenodon_punctatus
ENSGALG00000007058	LSG1	87	60.968	ENSSPAG00000005508	lsg1	99	60.725	Stegastes_partitus
ENSGALG00000007058	LSG1	87	62.613	ENSSSCG00000011827	LSG1	99	62.090	Sus_scrofa
ENSGALG00000007058	LSG1	79	85.378	ENSTGUG00000009068	LSG1	99	85.378	Taeniopygia_guttata
ENSGALG00000007058	LSG1	84	58.228	ENSTRUG00000017380	lsg1	99	57.721	Takifugu_rubripes
ENSGALG00000007058	LSG1	86	61.231	ENSTNIG00000015570	lsg1	99	61.826	Tetraodon_nigroviridis
ENSGALG00000007058	LSG1	87	59.940	ENSTTRG00000000559	LSG1	99	58.234	Tursiops_truncatus
ENSGALG00000007058	LSG1	87	62.874	ENSUAMG00000012454	LSG1	99	64.060	Ursus_americanus
ENSGALG00000007058	LSG1	87	62.874	ENSUMAG00000000855	LSG1	99	64.060	Ursus_maritimus
ENSGALG00000007058	LSG1	82	62.684	ENSVPAG00000012400	LSG1	97	61.415	Vicugna_pacos
ENSGALG00000007058	LSG1	82	64.553	ENSVVUG00000008956	LSG1	94	63.065	Vulpes_vulpes
ENSGALG00000007058	LSG1	87	62.481	ENSXETG00000003451	lsg1	100	63.126	Xenopus_tropicalis
ENSGALG00000007058	LSG1	86	60.465	ENSXCOG00000003239	lsg1	99	60.150	Xiphophorus_couchianus
ENSGALG00000007058	LSG1	86	60.836	ENSXMAG00000005536	lsg1	99	60.444	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005525	GTP binding	-	ISS	Function
GO:0005783	endoplasmic reticulum	-	ISS	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0015030	Cajal body	-	ISS	Component
GO:0015031	protein transport	-	IEA	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0051168	nuclear export	-	ISS	Process