EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSGALG00000008372 (Gene tree)
Gene ID: 421236
Gene Symbol: XRN2
Alias: -
Full Name: Gallus gallus 5'-3' exoribonuclease 2 (XRN2)%2C mRNA.
Gene Type: protein_coding
Species: Gallus_gallus
Status: putative
Strand: Minus strand
Length: 45149 bases
Position: chr3:3546571-3591719
Accession: NM_001031033
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGALP00000013622	XRN_N	PF03159.18	1.8e-103	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGALT00000013637	-	3599	-	ENSGALP00000013622	949 (aa)	-	Q5ZIP4

Gene Model

Click here to download ENSGALG00000008372's gene model file

Pathways

Pathway ID	Pathway Name	Source
gga03008	Ribosome biogenesis in eukaryotes	KEGG
gga03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSGALG00000008372's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGALG00000008372	XRN2	100	82.513	ENSG00000088930	XRN2	100	82.513	Homo_sapiens
ENSGALG00000008372	XRN2	97	70.802	ENSAPOG00000009818	xrn2	100	69.419	Acanthochromis_polyacanthus
ENSGALG00000008372	XRN2	100	82.932	ENSAMEG00000012581	XRN2	100	82.932	Ailuropoda_melanoleuca
ENSGALG00000008372	XRN2	90	71.185	ENSACIG00000015047	xrn2	95	75.816	Amphilophus_citrinellus
ENSGALG00000008372	XRN2	90	75.087	ENSAOCG00000023632	xrn2	100	69.827	Amphiprion_ocellaris
ENSGALG00000008372	XRN2	97	71.123	ENSAPEG00000014871	xrn2	100	69.725	Amphiprion_percula
ENSGALG00000008372	XRN2	90	74.394	ENSATEG00000001273	xrn2	98	70.644	Anabas_testudineus
ENSGALG00000008372	XRN2	97	96.649	ENSAPLG00000013869	XRN2	100	96.649	Anas_platyrhynchos
ENSGALG00000008372	XRN2	100	82.762	ENSACAG00000005565	XRN2	100	82.762	Anolis_carolinensis
ENSGALG00000008372	XRN2	100	82.827	ENSANAG00000020126	XRN2	100	82.827	Aotus_nancymaae
ENSGALG00000008372	XRN2	90	72.569	ENSACLG00000010522	xrn2	96	75.833	Astatotilapia_calliptera
ENSGALG00000008372	XRN2	100	71.223	ENSAMXG00000018301	xrn2	100	71.223	Astyanax_mexicanus
ENSGALG00000008372	XRN2	100	82.199	ENSBTAG00000011304	XRN2	100	82.199	Bos_taurus
ENSGALG00000008372	XRN2	86	54.930	WBGene00006964	xrn-2	88	54.514	Caenorhabditis_elegans
ENSGALG00000008372	XRN2	100	82.513	ENSCJAG00000005611	XRN2	100	82.513	Callithrix_jacchus
ENSGALG00000008372	XRN2	100	83.246	ENSCAFG00000005185	XRN2	100	83.246	Canis_familiaris
ENSGALG00000008372	XRN2	100	83.246	ENSCAFG00020027479	XRN2	100	83.246	Canis_lupus_dingo
ENSGALG00000008372	XRN2	100	82.304	ENSCHIG00000006921	XRN2	100	82.304	Capra_hircus
ENSGALG00000008372	XRN2	100	82.094	ENSTSYG00000008315	XRN2	100	82.094	Carlito_syrichta
ENSGALG00000008372	XRN2	97	69.925	ENSCAPG00000010773	XRN2	99	69.066	Cavia_aperea
ENSGALG00000008372	XRN2	100	82.827	ENSCPOG00000009407	XRN2	100	82.827	Cavia_porcellus
ENSGALG00000008372	XRN2	100	82.723	ENSCATG00000040350	XRN2	100	82.723	Cercocebus_atys
ENSGALG00000008372	XRN2	100	83.246	ENSCLAG00000013419	XRN2	100	83.246	Chinchilla_lanigera
ENSGALG00000008372	XRN2	100	82.723	ENSCSAG00000011094	XRN2	100	82.723	Chlorocebus_sabaeus
ENSGALG00000008372	XRN2	68	94.086	ENSCHOG00000013404	XRN2	70	94.086	Choloepus_hoffmanni
ENSGALG00000008372	XRN2	100	88.425	ENSCPBG00000023533	XRN2	100	88.738	Chrysemys_picta_bellii
ENSGALG00000008372	XRN2	86	60.000	ENSCING00000022336	-	100	60.479	Ciona_intestinalis
ENSGALG00000008372	XRN2	87	59.259	ENSCSAVG00000011217	-	100	62.167	Ciona_savignyi
ENSGALG00000008372	XRN2	100	82.723	ENSCANG00000040240	XRN2	100	82.723	Colobus_angolensis_palliatus
ENSGALG00000008372	XRN2	98	82.799	ENSCGRG00001010676	Xrn2	99	82.906	Cricetulus_griseus_chok1gshd
ENSGALG00000008372	XRN2	97	81.847	ENSCGRG00000006378	Xrn2	99	81.955	Cricetulus_griseus_crigri
ENSGALG00000008372	XRN2	54	74.460	ENSCSEG00000005628	xrn2	100	74.460	Cynoglossus_semilaevis
ENSGALG00000008372	XRN2	90	70.909	ENSCVAG00000018999	xrn2	98	77.438	Cyprinodon_variegatus
ENSGALG00000008372	XRN2	100	70.928	ENSDARG00000101900	xrn2	96	80.460	Danio_rerio
ENSGALG00000008372	XRN2	100	82.199	ENSDNOG00000001895	XRN2	100	82.199	Dasypus_novemcinctus
ENSGALG00000008372	XRN2	100	81.675	ENSDORG00000005434	Xrn2	100	81.675	Dipodomys_ordii
ENSGALG00000008372	XRN2	87	55.340	FBgn0031868	Rat1	89	55.213	Drosophila_melanogaster
ENSGALG00000008372	XRN2	100	72.851	ENSETEG00000001740	XRN2	100	72.642	Echinops_telfairi
ENSGALG00000008372	XRN2	84	70.944	ENSEBUG00000016136	xrn2	100	70.944	Eptatretus_burgeri
ENSGALG00000008372	XRN2	100	82.618	ENSEASG00005002484	XRN2	100	82.618	Equus_asinus_asinus
ENSGALG00000008372	XRN2	94	100.000	ENSECAG00000018988	XRN2	96	100.000	Equus_caballus
ENSGALG00000008372	XRN2	80	100.000	ENSEEUG00000009265	XRN2	80	100.000	Erinaceus_europaeus
ENSGALG00000008372	XRN2	100	68.283	ENSELUG00000000552	xrn2	100	70.902	Esox_lucius
ENSGALG00000008372	XRN2	100	82.827	ENSFCAG00000007970	XRN2	100	82.827	Felis_catus
ENSGALG00000008372	XRN2	100	93.895	ENSFALG00000004508	XRN2	100	93.895	Ficedula_albicollis
ENSGALG00000008372	XRN2	100	82.932	ENSFDAG00000016311	XRN2	100	82.932	Fukomys_damarensis
ENSGALG00000008372	XRN2	54	70.690	ENSFHEG00000013039	xrn2	98	70.690	Fundulus_heteroclitus
ENSGALG00000008372	XRN2	86	74.818	ENSGMOG00000013436	xrn2	100	74.818	Gadus_morhua
ENSGALG00000008372	XRN2	90	73.479	ENSGAFG00000014284	xrn2	99	73.479	Gambusia_affinis
ENSGALG00000008372	XRN2	87	75.060	ENSGACG00000011870	xrn2	96	79.651	Gasterosteus_aculeatus
ENSGALG00000008372	XRN2	100	88.425	ENSGAGG00000004884	XRN2	100	88.738	Gopherus_agassizii
ENSGALG00000008372	XRN2	100	82.723	ENSGGOG00000013738	XRN2	100	82.723	Gorilla_gorilla
ENSGALG00000008372	XRN2	54	73.796	ENSHBUG00000005077	xrn2	96	75.833	Haplochromis_burtoni
ENSGALG00000008372	XRN2	100	81.885	ENSHGLG00000014831	XRN2	100	81.780	Heterocephalus_glaber_female
ENSGALG00000008372	XRN2	100	81.885	ENSHGLG00100013130	XRN2	100	81.780	Heterocephalus_glaber_male
ENSGALG00000008372	XRN2	89	74.306	ENSHCOG00000011994	xrn2	99	68.629	Hippocampus_comes
ENSGALG00000008372	XRN2	100	69.919	ENSIPUG00000006639	xrn2	100	69.919	Ictalurus_punctatus
ENSGALG00000008372	XRN2	100	83.246	ENSSTOG00000000589	XRN2	100	83.246	Ictidomys_tridecemlineatus
ENSGALG00000008372	XRN2	100	82.618	ENSJJAG00000022128	Xrn2	100	82.618	Jaculus_jaculus
ENSGALG00000008372	XRN2	54	81.409	ENSLBEG00000010041	xrn2	100	81.409	Labrus_bergylta
ENSGALG00000008372	XRN2	94	75.634	ENSLACG00000008307	XRN2	97	79.503	Latimeria_chalumnae
ENSGALG00000008372	XRN2	99	72.222	ENSLOCG00000016874	xrn2	100	72.222	Lepisosteus_oculatus
ENSGALG00000008372	XRN2	100	81.885	ENSLAFG00000014624	XRN2	100	81.885	Loxodonta_africana
ENSGALG00000008372	XRN2	100	82.723	ENSMFAG00000038122	XRN2	100	82.723	Macaca_fascicularis
ENSGALG00000008372	XRN2	100	82.723	ENSMMUG00000011405	XRN2	100	82.723	Macaca_mulatta
ENSGALG00000008372	XRN2	100	82.827	ENSMNEG00000040626	XRN2	100	82.827	Macaca_nemestrina
ENSGALG00000008372	XRN2	100	82.723	ENSMLEG00000041897	XRN2	100	82.723	Mandrillus_leucophaeus
ENSGALG00000008372	XRN2	90	75.204	ENSMAMG00000008633	xrn2	97	71.140	Mastacembelus_armatus
ENSGALG00000008372	XRN2	90	74.537	ENSMZEG00005022362	xrn2	97	74.537	Maylandia_zebra
ENSGALG00000008372	XRN2	99	97.068	ENSMGAG00000003196	XRN2	99	97.068	Meleagris_gallopavo
ENSGALG00000008372	XRN2	100	82.932	ENSMAUG00000021842	Xrn2	100	82.932	Mesocricetus_auratus
ENSGALG00000008372	XRN2	100	82.094	ENSMICG00000008126	XRN2	100	82.094	Microcebus_murinus
ENSGALG00000008372	XRN2	100	82.914	ENSMOCG00000012588	Xrn2	100	83.019	Microtus_ochrogaster
ENSGALG00000008372	XRN2	90	74.260	ENSMMOG00000017576	xrn2	96	75.619	Mola_mola
ENSGALG00000008372	XRN2	100	83.824	ENSMODG00000006163	XRN2	100	83.824	Monodelphis_domestica
ENSGALG00000008372	XRN2	91	72.379	ENSMALG00000011355	xrn2	95	77.543	Monopterus_albus
ENSGALG00000008372	XRN2	100	82.495	MGP_CAROLIEiJ_G0024400	Xrn2	100	82.495	Mus_caroli
ENSGALG00000008372	XRN2	100	82.704	ENSMUSG00000027433	Xrn2	100	82.704	Mus_musculus
ENSGALG00000008372	XRN2	100	82.600	MGP_PahariEiJ_G0025843	Xrn2	100	82.600	Mus_pahari
ENSGALG00000008372	XRN2	100	82.704	MGP_SPRETEiJ_G0025318	Xrn2	94	89.744	Mus_spretus
ENSGALG00000008372	XRN2	100	81.584	ENSMPUG00000001198	XRN2	93	81.584	Mustela_putorius_furo
ENSGALG00000008372	XRN2	100	82.723	ENSMLUG00000001536	XRN2	100	82.723	Myotis_lucifugus
ENSGALG00000008372	XRN2	100	82.827	ENSNGAG00000018138	Xrn2	100	82.827	Nannospalax_galili
ENSGALG00000008372	XRN2	90	75.319	ENSNBRG00000008062	xrn2	97	75.319	Neolamprologus_brichardi
ENSGALG00000008372	XRN2	100	82.618	ENSNLEG00000009991	XRN2	100	82.618	Nomascus_leucogenys
ENSGALG00000008372	XRN2	66	97.778	ENSMEUG00000008622	-	67	97.778	Notamacropus_eugenii
ENSGALG00000008372	XRN2	75	75.263	ENSOPRG00000001397	-	77	75.263	Ochotona_princeps
ENSGALG00000008372	XRN2	100	83.141	ENSODEG00000010745	-	100	83.141	Octodon_degus
ENSGALG00000008372	XRN2	97	75.488	ENSODEG00000000860	-	99	75.565	Octodon_degus
ENSGALG00000008372	XRN2	100	69.453	ENSONIG00000018720	xrn2	100	70.795	Oreochromis_niloticus
ENSGALG00000008372	XRN2	100	83.648	ENSOANG00000015673	XRN2	100	83.648	Ornithorhynchus_anatinus
ENSGALG00000008372	XRN2	100	83.141	ENSOCUG00000013468	XRN2	100	83.141	Oryctolagus_cuniculus
ENSGALG00000008372	XRN2	98	68.808	ENSORLG00000017213	xrn2	97	74.653	Oryzias_latipes
ENSGALG00000008372	XRN2	98	69.439	ENSORLG00020001824	xrn2	100	69.867	Oryzias_latipes_hni
ENSGALG00000008372	XRN2	98	68.776	ENSORLG00015019747	xrn2	100	69.215	Oryzias_latipes_hsok
ENSGALG00000008372	XRN2	90	74.190	ENSOMEG00000019820	xrn2	100	69.270	Oryzias_melastigma
ENSGALG00000008372	XRN2	100	82.531	ENSOGAG00000001068	XRN2	100	82.531	Otolemur_garnettii
ENSGALG00000008372	XRN2	97	81.808	ENSOARG00000004443	XRN2	99	81.808	Ovis_aries
ENSGALG00000008372	XRN2	100	82.723	ENSPPAG00000033549	XRN2	100	82.723	Pan_paniscus
ENSGALG00000008372	XRN2	100	82.827	ENSPPRG00000008732	XRN2	100	82.827	Panthera_pardus
ENSGALG00000008372	XRN2	97	82.454	ENSPTIG00000015683	XRN2	97	82.454	Panthera_tigris_altaica
ENSGALG00000008372	XRN2	100	82.723	ENSPTRG00000013308	XRN2	100	82.723	Pan_troglodytes
ENSGALG00000008372	XRN2	100	82.723	ENSPANG00000018088	XRN2	100	82.723	Papio_anubis
ENSGALG00000008372	XRN2	100	70.202	ENSPKIG00000016889	xrn2	100	71.414	Paramormyrops_kingsleyae
ENSGALG00000008372	XRN2	81	89.844	ENSPSIG00000014666	XRN2	100	89.844	Pelodiscus_sinensis
ENSGALG00000008372	XRN2	100	82.304	ENSPEMG00000000111	Xrn2	100	82.304	Peromyscus_maniculatus_bairdii
ENSGALG00000008372	XRN2	100	69.112	ENSPFOG00000004182	xrn2	99	70.052	Poecilia_formosa
ENSGALG00000008372	XRN2	90	74.053	ENSPLAG00000007351	xrn2	97	74.053	Poecilia_latipinna
ENSGALG00000008372	XRN2	94	67.943	ENSPMEG00000011798	xrn2	99	68.627	Poecilia_mexicana
ENSGALG00000008372	XRN2	90	74.048	ENSPREG00000012452	xrn2	99	72.840	Poecilia_reticulata
ENSGALG00000008372	XRN2	100	82.304	ENSPPYG00000010755	XRN2	100	82.304	Pongo_abelii
ENSGALG00000008372	XRN2	100	78.056	ENSPCAG00000011191	XRN2	100	78.056	Procavia_capensis
ENSGALG00000008372	XRN2	100	75.497	ENSPCOG00000016468	XRN2	100	75.497	Propithecus_coquereli
ENSGALG00000008372	XRN2	93	73.551	ENSPVAG00000004596	XRN2	93	73.551	Pteropus_vampyrus
ENSGALG00000008372	XRN2	90	72.569	ENSPNYG00000001765	xrn2	97	72.569	Pundamilia_nyererei
ENSGALG00000008372	XRN2	100	71.238	ENSPNAG00000010956	xrn2	99	71.238	Pygocentrus_nattereri
ENSGALG00000008372	XRN2	100	82.408	ENSRNOG00000011785	Xrn2	100	82.513	Rattus_norvegicus
ENSGALG00000008372	XRN2	86	86.585	ENSRBIG00000036193	XRN2	100	86.585	Rhinopithecus_bieti
ENSGALG00000008372	XRN2	100	82.723	ENSRROG00000044400	XRN2	90	82.723	Rhinopithecus_roxellana
ENSGALG00000008372	XRN2	69	52.154	YOR048C	RAT1	61	54.126	Saccharomyces_cerevisiae
ENSGALG00000008372	XRN2	100	82.827	ENSSBOG00000021014	XRN2	100	82.827	Saimiri_boliviensis_boliviensis
ENSGALG00000008372	XRN2	100	72.652	ENSSFOG00015001091	xrn2	100	72.652	Scleropages_formosus
ENSGALG00000008372	XRN2	90	75.000	ENSSMAG00000007834	xrn2	100	69.402	Scophthalmus_maximus
ENSGALG00000008372	XRN2	90	72.318	ENSSDUG00000012802	xrn2	99	72.000	Seriola_dumerili
ENSGALG00000008372	XRN2	93	73.750	ENSSLDG00000021273	xrn2	99	73.750	Seriola_lalandi_dorsalis
ENSGALG00000008372	XRN2	76	100.000	ENSSARG00000005859	-	76	100.000	Sorex_araneus
ENSGALG00000008372	XRN2	98	82.070	ENSSPUG00000005485	XRN2	96	82.177	Sphenodon_punctatus
ENSGALG00000008372	XRN2	100	70.072	ENSSPAG00000016027	xrn2	99	70.359	Stegastes_partitus
ENSGALG00000008372	XRN2	100	81.885	ENSSSCG00000007109	XRN2	100	81.885	Sus_scrofa
ENSGALG00000008372	XRN2	100	92.752	ENSTGUG00000007535	XRN2	100	92.752	Taeniopygia_guttata
ENSGALG00000008372	XRN2	90	73.690	ENSTRUG00000015489	xrn2	100	67.984	Takifugu_rubripes
ENSGALG00000008372	XRN2	100	69.731	ENSTNIG00000010712	xrn2	100	69.731	Tetraodon_nigroviridis
ENSGALG00000008372	XRN2	100	82.199	ENSTBEG00000004119	XRN2	100	82.304	Tupaia_belangeri
ENSGALG00000008372	XRN2	93	87.770	ENSTTRG00000009087	XRN2	93	87.770	Tursiops_truncatus
ENSGALG00000008372	XRN2	100	83.141	ENSUAMG00000024634	XRN2	100	83.141	Ursus_americanus
ENSGALG00000008372	XRN2	97	82.562	ENSUMAG00000004012	XRN2	95	82.562	Ursus_maritimus
ENSGALG00000008372	XRN2	89	76.914	ENSVPAG00000010694	XRN2	91	76.914	Vicugna_pacos
ENSGALG00000008372	XRN2	100	83.246	ENSVVUG00000012178	XRN2	100	83.246	Vulpes_vulpes
ENSGALG00000008372	XRN2	100	75.208	ENSXETG00000023501	xrn2	100	75.208	Xenopus_tropicalis
ENSGALG00000008372	XRN2	100	68.595	ENSXMAG00000000242	xrn2	92	80.535	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000738	DNA catabolic process, exonucleolytic	-	ISS	Process
GO:0001147	transcription termination site sequence-specific DNA binding	-	IEA	Function
GO:0004534	5'-3' exoribonuclease activity	-	IEA	Function
GO:0005730	nucleolus	-	ISS	Component
GO:0006353	DNA-templated transcription, termination	-	IEA	Process
GO:0006397	mRNA processing	-	IEA	Process
GO:0007283	spermatogenesis	-	IEA	Process
GO:0008409	5'-3' exonuclease activity	-	ISS	Function
GO:0016235	aggresome	-	IEA	Component
GO:0046872	metal ion binding	-	IEA	Function
GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic	-	IEA	Process