EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSGALG00000008561 (Gene tree)
Gene ID: 423889
Gene Symbol: SMNDC1
Alias: SMNR|SPF30|TDRD16C
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Gallus_gallus
Status: putative
Strand: Minus strand
Length: 9083 bases
Position: chr6:26833510-26842592
Accession: 423889
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGALP00000013929	TUDOR	PF00567.24	0.00016	1	1
ENSGALP00000013929	SMN	PF06003.12	3.4e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGALT00000013945	SMNDC1-201	2477	XM_421753	ENSGALP00000013929	238 (aa)	XP_421753	E1BQK7

Gene Model

Click here to download ENSGALG00000008561's gene model file

Pathways

Pathway ID	Pathway Name	Source
gga03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSGALG00000008561's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGALG00000008561	SMNDC1	100	95.798	ENSG00000119953	SMNDC1	100	95.798	Homo_sapiens
ENSGALG00000008561	SMNDC1	100	76.471	ENSAPOG00000021772	smndc1	100	76.471	Acanthochromis_polyacanthus
ENSGALG00000008561	SMNDC1	100	96.218	ENSAMEG00000005251	SMNDC1	100	96.218	Ailuropoda_melanoleuca
ENSGALG00000008561	SMNDC1	100	77.731	ENSACIG00000004819	smndc1	100	77.731	Amphilophus_citrinellus
ENSGALG00000008561	SMNDC1	100	76.471	ENSAOCG00000017869	smndc1	100	76.471	Amphiprion_ocellaris
ENSGALG00000008561	SMNDC1	100	76.471	ENSAPEG00000007752	smndc1	100	76.471	Amphiprion_percula
ENSGALG00000008561	SMNDC1	100	77.311	ENSATEG00000006830	smndc1	100	77.311	Anabas_testudineus
ENSGALG00000008561	SMNDC1	83	100.000	ENSAPLG00000004322	SMNDC1	100	100.000	Anas_platyrhynchos
ENSGALG00000008561	SMNDC1	100	95.798	ENSACAG00000005983	SMNDC1	100	95.798	Anolis_carolinensis
ENSGALG00000008561	SMNDC1	100	96.218	ENSANAG00000032875	SMNDC1	100	96.218	Aotus_nancymaae
ENSGALG00000008561	SMNDC1	100	77.311	ENSACLG00000016360	smndc1	100	77.311	Astatotilapia_calliptera
ENSGALG00000008561	SMNDC1	100	77.311	ENSAMXG00000020310	smndc1	100	77.311	Astyanax_mexicanus
ENSGALG00000008561	SMNDC1	100	95.798	ENSBTAG00000000551	SMNDC1	100	95.798	Bos_taurus
ENSGALG00000008561	SMNDC1	100	96.218	ENSCJAG00000018624	SMNDC1	100	96.218	Callithrix_jacchus
ENSGALG00000008561	SMNDC1	100	96.218	ENSCAFG00000010720	SMNDC1	100	96.218	Canis_familiaris
ENSGALG00000008561	SMNDC1	100	96.218	ENSCAFG00020011913	SMNDC1	100	96.218	Canis_lupus_dingo
ENSGALG00000008561	SMNDC1	100	95.798	ENSCHIG00000010604	SMNDC1	100	95.798	Capra_hircus
ENSGALG00000008561	SMNDC1	100	96.639	ENSTSYG00000026454	SMNDC1	100	96.639	Carlito_syrichta
ENSGALG00000008561	SMNDC1	84	94.527	ENSCAPG00000009132	SMNDC1	100	94.527	Cavia_aperea
ENSGALG00000008561	SMNDC1	100	95.378	ENSCPOG00000031666	SMNDC1	100	95.378	Cavia_porcellus
ENSGALG00000008561	SMNDC1	100	96.218	ENSCCAG00000021793	SMNDC1	100	96.218	Cebus_capucinus
ENSGALG00000008561	SMNDC1	100	95.798	ENSCATG00000035910	SMNDC1	100	95.798	Cercocebus_atys
ENSGALG00000008561	SMNDC1	100	95.378	ENSCLAG00000002838	SMNDC1	100	95.378	Chinchilla_lanigera
ENSGALG00000008561	SMNDC1	100	96.218	ENSCSAG00000005169	SMNDC1	100	96.218	Chlorocebus_sabaeus
ENSGALG00000008561	SMNDC1	81	94.819	ENSCHOG00000002936	SMNDC1	100	94.819	Choloepus_hoffmanni
ENSGALG00000008561	SMNDC1	100	97.479	ENSCPBG00000012837	SMNDC1	100	97.479	Chrysemys_picta_bellii
ENSGALG00000008561	SMNDC1	100	76.050	ENSCANG00000036994	-	100	76.050	Colobus_angolensis_palliatus
ENSGALG00000008561	SMNDC1	100	88.235	ENSCANG00000034620	-	100	88.235	Colobus_angolensis_palliatus
ENSGALG00000008561	SMNDC1	100	96.218	ENSCANG00000031720	-	100	96.218	Colobus_angolensis_palliatus
ENSGALG00000008561	SMNDC1	100	96.218	ENSCGRG00001012973	Smndc1	100	96.218	Cricetulus_griseus_chok1gshd
ENSGALG00000008561	SMNDC1	100	96.218	ENSCGRG00000012396	Smndc1	100	96.218	Cricetulus_griseus_crigri
ENSGALG00000008561	SMNDC1	100	76.050	ENSCSEG00000015621	smndc1	100	76.050	Cynoglossus_semilaevis
ENSGALG00000008561	SMNDC1	100	78.151	ENSCVAG00000020432	smndc1	100	78.151	Cyprinodon_variegatus
ENSGALG00000008561	SMNDC1	100	79.832	ENSDARG00000056235	smndc1	100	79.832	Danio_rerio
ENSGALG00000008561	SMNDC1	100	96.218	ENSDNOG00000016387	SMNDC1	83	96.218	Dasypus_novemcinctus
ENSGALG00000008561	SMNDC1	100	96.218	ENSDORG00000023715	Smndc1	100	96.218	Dipodomys_ordii
ENSGALG00000008561	SMNDC1	95	43.373	FBgn0039977	CG17454	98	43.373	Drosophila_melanogaster
ENSGALG00000008561	SMNDC1	100	72.199	ENSEBUG00000010929	smndc1	100	71.784	Eptatretus_burgeri
ENSGALG00000008561	SMNDC1	100	96.218	ENSEASG00005014930	SMNDC1	100	96.218	Equus_asinus_asinus
ENSGALG00000008561	SMNDC1	100	96.218	ENSECAG00000029973	SMNDC1	100	96.218	Equus_caballus
ENSGALG00000008561	SMNDC1	83	68.182	ENSEEUG00000013407	-	100	68.182	Erinaceus_europaeus
ENSGALG00000008561	SMNDC1	100	78.151	ENSELUG00000000227	smndc1	100	78.151	Esox_lucius
ENSGALG00000008561	SMNDC1	100	96.218	ENSFCAG00000027353	SMNDC1	100	96.218	Felis_catus
ENSGALG00000008561	SMNDC1	100	100.000	ENSFALG00000002306	SMNDC1	100	100.000	Ficedula_albicollis
ENSGALG00000008561	SMNDC1	100	94.958	ENSFDAG00000006468	SMNDC1	100	94.958	Fukomys_damarensis
ENSGALG00000008561	SMNDC1	100	76.891	ENSFHEG00000020150	smndc1	100	76.891	Fundulus_heteroclitus
ENSGALG00000008561	SMNDC1	100	76.471	ENSGMOG00000016585	smndc1	100	76.471	Gadus_morhua
ENSGALG00000008561	SMNDC1	100	76.891	ENSGAFG00000011582	smndc1	100	76.891	Gambusia_affinis
ENSGALG00000008561	SMNDC1	100	76.050	ENSGACG00000009468	smndc1	100	76.050	Gasterosteus_aculeatus
ENSGALG00000008561	SMNDC1	100	97.479	ENSGAGG00000024547	SMNDC1	100	97.479	Gopherus_agassizii
ENSGALG00000008561	SMNDC1	100	96.218	ENSGGOG00000010071	SMNDC1	100	96.218	Gorilla_gorilla
ENSGALG00000008561	SMNDC1	100	77.311	ENSHBUG00000017596	smndc1	100	77.311	Haplochromis_burtoni
ENSGALG00000008561	SMNDC1	100	65.574	ENSHGLG00000001157	-	100	60.976	Heterocephalus_glaber_female
ENSGALG00000008561	SMNDC1	100	94.958	ENSHGLG00000013390	-	100	94.958	Heterocephalus_glaber_female
ENSGALG00000008561	SMNDC1	100	94.958	ENSHGLG00100004814	-	100	94.958	Heterocephalus_glaber_male
ENSGALG00000008561	SMNDC1	100	74.180	ENSHGLG00100004278	-	100	72.653	Heterocephalus_glaber_male
ENSGALG00000008561	SMNDC1	100	74.895	ENSHCOG00000000783	smndc1	100	74.895	Hippocampus_comes
ENSGALG00000008561	SMNDC1	100	78.571	ENSIPUG00000004217	smndc1	100	78.571	Ictalurus_punctatus
ENSGALG00000008561	SMNDC1	100	96.639	ENSSTOG00000006088	SMNDC1	100	96.639	Ictidomys_tridecemlineatus
ENSGALG00000008561	SMNDC1	100	95.798	ENSJJAG00000019974	Smndc1	100	95.798	Jaculus_jaculus
ENSGALG00000008561	SMNDC1	100	76.050	ENSKMAG00000020134	smndc1	100	76.050	Kryptolebias_marmoratus
ENSGALG00000008561	SMNDC1	100	75.630	ENSLBEG00000004598	smndc1	100	75.630	Labrus_bergylta
ENSGALG00000008561	SMNDC1	100	83.193	ENSLACG00000007784	SMNDC1	100	83.193	Latimeria_chalumnae
ENSGALG00000008561	SMNDC1	100	84.454	ENSLOCG00000012355	smndc1	100	84.454	Lepisosteus_oculatus
ENSGALG00000008561	SMNDC1	100	95.798	ENSLAFG00000014353	SMNDC1	100	95.798	Loxodonta_africana
ENSGALG00000008561	SMNDC1	100	78.151	ENSMFAG00000038381	-	100	77.311	Macaca_fascicularis
ENSGALG00000008561	SMNDC1	100	96.218	ENSMFAG00000002433	-	100	96.218	Macaca_fascicularis
ENSGALG00000008561	SMNDC1	100	96.218	ENSMMUG00000007775	SMNDC1	100	96.218	Macaca_mulatta
ENSGALG00000008561	SMNDC1	100	78.151	ENSMMUG00000045875	-	100	77.311	Macaca_mulatta
ENSGALG00000008561	SMNDC1	100	96.218	ENSMNEG00000042963	-	100	96.218	Macaca_nemestrina
ENSGALG00000008561	SMNDC1	100	84.874	ENSMNEG00000033853	-	100	84.874	Macaca_nemestrina
ENSGALG00000008561	SMNDC1	100	89.958	ENSMLEG00000040236	SMNDC1	100	89.540	Mandrillus_leucophaeus
ENSGALG00000008561	SMNDC1	89	73.239	ENSMAMG00000018233	smndc1	87	73.239	Mastacembelus_armatus
ENSGALG00000008561	SMNDC1	100	77.311	ENSMZEG00005027510	smndc1	100	77.311	Maylandia_zebra
ENSGALG00000008561	SMNDC1	84	99.500	ENSMGAG00000010777	SMNDC1	84	99.500	Meleagris_gallopavo
ENSGALG00000008561	SMNDC1	99	77.637	ENSMAUG00000005459	-	93	77.637	Mesocricetus_auratus
ENSGALG00000008561	SMNDC1	100	96.218	ENSMAUG00000012243	-	100	96.218	Mesocricetus_auratus
ENSGALG00000008561	SMNDC1	100	84.034	ENSMICG00000031640	-	100	84.034	Microcebus_murinus
ENSGALG00000008561	SMNDC1	100	95.378	ENSMICG00000027336	-	100	95.378	Microcebus_murinus
ENSGALG00000008561	SMNDC1	100	95.798	ENSMOCG00000002458	Smndc1	100	95.798	Microtus_ochrogaster
ENSGALG00000008561	SMNDC1	100	76.050	ENSMMOG00000008856	smndc1	100	76.050	Mola_mola
ENSGALG00000008561	SMNDC1	100	96.218	ENSMODG00000010542	SMNDC1	100	96.218	Monodelphis_domestica
ENSGALG00000008561	SMNDC1	100	76.471	ENSMALG00000017598	smndc1	100	76.471	Monopterus_albus
ENSGALG00000008561	SMNDC1	100	94.958	MGP_CAROLIEiJ_G0023072	Smndc1	100	94.958	Mus_caroli
ENSGALG00000008561	SMNDC1	100	95.378	ENSMUSG00000025024	Smndc1	100	95.378	Mus_musculus
ENSGALG00000008561	SMNDC1	100	95.798	MGP_PahariEiJ_G0014560	Smndc1	100	95.798	Mus_pahari
ENSGALG00000008561	SMNDC1	100	95.378	MGP_SPRETEiJ_G0023993	Smndc1	100	95.378	Mus_spretus
ENSGALG00000008561	SMNDC1	100	96.218	ENSMPUG00000002089	SMNDC1	100	96.218	Mustela_putorius_furo
ENSGALG00000008561	SMNDC1	100	95.798	ENSMLUG00000016007	SMNDC1	100	95.798	Myotis_lucifugus
ENSGALG00000008561	SMNDC1	100	96.639	ENSNGAG00000006833	Smndc1	100	96.639	Nannospalax_galili
ENSGALG00000008561	SMNDC1	100	77.731	ENSNBRG00000017089	smndc1	100	77.731	Neolamprologus_brichardi
ENSGALG00000008561	SMNDC1	100	96.218	ENSNLEG00000015471	SMNDC1	100	96.218	Nomascus_leucogenys
ENSGALG00000008561	SMNDC1	82	56.500	ENSMEUG00000010120	-	99	56.500	Notamacropus_eugenii
ENSGALG00000008561	SMNDC1	100	95.378	ENSOPRG00000015348	SMNDC1	100	95.378	Ochotona_princeps
ENSGALG00000008561	SMNDC1	100	66.807	ENSODEG00000007594	-	100	63.866	Octodon_degus
ENSGALG00000008561	SMNDC1	100	77.731	ENSONIG00000000434	smndc1	100	77.731	Oreochromis_niloticus
ENSGALG00000008561	SMNDC1	100	96.639	ENSOANG00000001598	SMNDC1	100	96.639	Ornithorhynchus_anatinus
ENSGALG00000008561	SMNDC1	100	95.378	ENSOCUG00000008145	-	100	95.378	Oryctolagus_cuniculus
ENSGALG00000008561	SMNDC1	100	72.269	ENSOCUG00000012274	-	100	73.950	Oryctolagus_cuniculus
ENSGALG00000008561	SMNDC1	100	75.630	ENSORLG00000005934	smndc1	95	75.630	Oryzias_latipes
ENSGALG00000008561	SMNDC1	100	75.630	ENSORLG00020008796	smndc1	95	75.630	Oryzias_latipes_hni
ENSGALG00000008561	SMNDC1	100	75.630	ENSORLG00015013666	smndc1	100	75.630	Oryzias_latipes_hsok
ENSGALG00000008561	SMNDC1	100	77.311	ENSOMEG00000007590	smndc1	100	77.311	Oryzias_melastigma
ENSGALG00000008561	SMNDC1	100	95.798	ENSOGAG00000000571	SMNDC1	100	95.798	Otolemur_garnettii
ENSGALG00000008561	SMNDC1	100	95.798	ENSOARG00000009500	SMNDC1	100	95.798	Ovis_aries
ENSGALG00000008561	SMNDC1	100	96.218	ENSPPAG00000027815	SMNDC1	100	96.218	Pan_paniscus
ENSGALG00000008561	SMNDC1	100	96.218	ENSPPRG00000013749	SMNDC1	100	96.218	Panthera_pardus
ENSGALG00000008561	SMNDC1	100	96.218	ENSPTIG00000011451	SMNDC1	100	96.218	Panthera_tigris_altaica
ENSGALG00000008561	SMNDC1	100	96.218	ENSPTRG00000002937	SMNDC1	100	96.218	Pan_troglodytes
ENSGALG00000008561	SMNDC1	100	96.218	ENSPANG00000020805	-	100	96.218	Papio_anubis
ENSGALG00000008561	SMNDC1	100	90.336	ENSPANG00000031346	-	100	90.336	Papio_anubis
ENSGALG00000008561	SMNDC1	100	80.672	ENSPKIG00000017164	smndc1	100	80.672	Paramormyrops_kingsleyae
ENSGALG00000008561	SMNDC1	100	97.059	ENSPSIG00000012257	SMNDC1	100	97.059	Pelodiscus_sinensis
ENSGALG00000008561	SMNDC1	100	74.370	ENSPMGG00000015651	smndc1	100	73.950	Periophthalmus_magnuspinnatus
ENSGALG00000008561	SMNDC1	100	96.218	ENSPEMG00000022058	Smndc1	100	96.218	Peromyscus_maniculatus_bairdii
ENSGALG00000008561	SMNDC1	100	68.443	ENSPMAG00000007705	smndc1	100	67.623	Petromyzon_marinus
ENSGALG00000008561	SMNDC1	97	61.739	ENSPCIG00000009693	-	100	61.739	Phascolarctos_cinereus
ENSGALG00000008561	SMNDC1	100	96.218	ENSPCIG00000018419	SMNDC1	100	96.218	Phascolarctos_cinereus
ENSGALG00000008561	SMNDC1	100	77.311	ENSPFOG00000017113	smndc1	100	77.311	Poecilia_formosa
ENSGALG00000008561	SMNDC1	100	76.891	ENSPLAG00000010372	smndc1	100	76.891	Poecilia_latipinna
ENSGALG00000008561	SMNDC1	100	77.731	ENSPMEG00000012288	smndc1	100	77.731	Poecilia_mexicana
ENSGALG00000008561	SMNDC1	100	76.891	ENSPREG00000012279	smndc1	100	76.891	Poecilia_reticulata
ENSGALG00000008561	SMNDC1	100	96.218	ENSPPYG00000002643	SMNDC1	100	96.218	Pongo_abelii
ENSGALG00000008561	SMNDC1	81	94.819	ENSPCAG00000016183	SMNDC1	100	94.819	Procavia_capensis
ENSGALG00000008561	SMNDC1	100	95.798	ENSPCOG00000024343	SMNDC1	100	95.798	Propithecus_coquereli
ENSGALG00000008561	SMNDC1	100	73.109	ENSPVAG00000004368	SMNDC1	100	73.109	Pteropus_vampyrus
ENSGALG00000008561	SMNDC1	83	76.768	ENSPNYG00000024093	smndc1	86	76.768	Pundamilia_nyererei
ENSGALG00000008561	SMNDC1	100	77.731	ENSPNAG00000025285	smndc1	100	77.731	Pygocentrus_nattereri
ENSGALG00000008561	SMNDC1	100	94.958	ENSRNOG00000014833	Smndc1	100	94.958	Rattus_norvegicus
ENSGALG00000008561	SMNDC1	100	95.798	ENSRBIG00000000224	-	100	95.798	Rhinopithecus_bieti
ENSGALG00000008561	SMNDC1	100	79.832	ENSRBIG00000032452	-	100	79.832	Rhinopithecus_bieti
ENSGALG00000008561	SMNDC1	100	80.252	ENSRROG00000039125	-	100	80.252	Rhinopithecus_roxellana
ENSGALG00000008561	SMNDC1	100	96.218	ENSRROG00000044992	-	100	96.218	Rhinopithecus_roxellana
ENSGALG00000008561	SMNDC1	100	96.218	ENSSBOG00000026789	SMNDC1	100	96.218	Saimiri_boliviensis_boliviensis
ENSGALG00000008561	SMNDC1	100	96.218	ENSSHAG00000015189	SMNDC1	100	96.218	Sarcophilus_harrisii
ENSGALG00000008561	SMNDC1	100	79.832	ENSSFOG00015008311	smndc1	100	79.832	Scleropages_formosus
ENSGALG00000008561	SMNDC1	100	77.311	ENSSMAG00000020118	smndc1	100	77.311	Scophthalmus_maximus
ENSGALG00000008561	SMNDC1	100	78.151	ENSSDUG00000015330	smndc1	100	78.151	Seriola_dumerili
ENSGALG00000008561	SMNDC1	100	78.151	ENSSLDG00000017325	smndc1	100	78.151	Seriola_lalandi_dorsalis
ENSGALG00000008561	SMNDC1	100	95.378	ENSSARG00000006063	SMNDC1	100	95.378	Sorex_araneus
ENSGALG00000008561	SMNDC1	100	97.479	ENSSPUG00000004574	SMNDC1	100	97.479	Sphenodon_punctatus
ENSGALG00000008561	SMNDC1	100	76.050	ENSSPAG00000000338	smndc1	100	76.050	Stegastes_partitus
ENSGALG00000008561	SMNDC1	100	95.798	ENSSSCG00000030507	SMNDC1	100	95.798	Sus_scrofa
ENSGALG00000008561	SMNDC1	100	100.000	ENSTGUG00000010599	SMNDC1	100	100.000	Taeniopygia_guttata
ENSGALG00000008561	SMNDC1	100	73.950	ENSTRUG00000023281	smndc1	100	73.950	Takifugu_rubripes
ENSGALG00000008561	SMNDC1	100	74.370	ENSTNIG00000013331	smndc1	100	74.370	Tetraodon_nigroviridis
ENSGALG00000008561	SMNDC1	100	95.798	ENSTBEG00000014337	SMNDC1	100	95.798	Tupaia_belangeri
ENSGALG00000008561	SMNDC1	100	96.218	ENSUAMG00000008142	SMNDC1	100	96.218	Ursus_americanus
ENSGALG00000008561	SMNDC1	100	96.218	ENSUMAG00000023722	SMNDC1	100	96.218	Ursus_maritimus
ENSGALG00000008561	SMNDC1	83	96.970	ENSVPAG00000003402	SMNDC1	100	96.970	Vicugna_pacos
ENSGALG00000008561	SMNDC1	100	96.218	ENSVVUG00000007820	SMNDC1	100	96.218	Vulpes_vulpes
ENSGALG00000008561	SMNDC1	60	79.577	ENSXETG00000015415	SMNDC1	100	79.577	Xenopus_tropicalis
ENSGALG00000008561	SMNDC1	100	76.891	ENSXCOG00000009159	smndc1	100	76.891	Xiphophorus_couchianus
ENSGALG00000008561	SMNDC1	100	76.471	ENSXMAG00000012755	smndc1	100	76.471	Xiphophorus_maculatus