EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSGALG00000008618 (Gene tree)
Gene ID: 100858231
Gene Symbol: UPF3B
Alias: -
Full Name: UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Gallus_gallus
Status: putative
Strand: Plus strand
Length: 6680 bases
Position: chr4:16494368-16501047
Accession: 20439
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGALP00000038283	Smg4_UPF3	PF03467.15	2.5e-54	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGALT00000039073	UPF3B-201	1437	-	ENSGALP00000038283	478 (aa)	-	F1NQA5

Gene Model

Click here to download ENSGALG00000008618's gene model file

Pathways

Pathway ID	Pathway Name	Source
gga03013	RNA transport	KEGG
gga03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSGALG00000008618's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGALG00000008618	UPF3B	99	69.102	ENSG00000125351	UPF3B	95	72.038	Homo_sapiens
ENSGALG00000008618	UPF3B	99	58.542	ENSAPOG00000012775	upf3b	99	57.500	Acanthochromis_polyacanthus
ENSGALG00000008618	UPF3B	99	68.685	ENSAMEG00000000163	UPF3B	91	69.885	Ailuropoda_melanoleuca
ENSGALG00000008618	UPF3B	99	52.165	ENSACIG00000013582	upf3b	99	53.942	Amphilophus_citrinellus
ENSGALG00000008618	UPF3B	99	57.083	ENSAOCG00000000706	upf3b	99	56.576	Amphiprion_ocellaris
ENSGALG00000008618	UPF3B	99	58.542	ENSAPEG00000005545	upf3b	99	57.917	Amphiprion_percula
ENSGALG00000008618	UPF3B	96	59.395	ENSATEG00000018742	upf3b	96	58.963	Anabas_testudineus
ENSGALG00000008618	UPF3B	100	77.178	ENSACAG00000003625	UPF3B	100	75.983	Anolis_carolinensis
ENSGALG00000008618	UPF3B	99	69.102	ENSANAG00000021894	-	99	74.182	Aotus_nancymaae
ENSGALG00000008618	UPF3B	58	53.455	ENSANAG00000033169	-	55	73.913	Aotus_nancymaae
ENSGALG00000008618	UPF3B	99	63.883	ENSANAG00000025598	-	99	64.706	Aotus_nancymaae
ENSGALG00000008618	UPF3B	100	56.818	ENSACLG00000001649	upf3b	99	56.818	Astatotilapia_calliptera
ENSGALG00000008618	UPF3B	58	66.906	ENSAMXG00000000199	upf3b	100	64.388	Astyanax_mexicanus
ENSGALG00000008618	UPF3B	67	74.545	ENSBTAG00000035615	UPF3B	100	74.545	Bos_taurus
ENSGALG00000008618	UPF3B	99	68.476	ENSCJAG00000004975	UPF3B	99	73.818	Callithrix_jacchus
ENSGALG00000008618	UPF3B	98	69.280	ENSCAFG00000018426	UPF3B	91	68.203	Canis_familiaris
ENSGALG00000008618	UPF3B	99	66.806	ENSCAFG00020004074	UPF3B	91	64.853	Canis_lupus_dingo
ENSGALG00000008618	UPF3B	89	50.350	ENSCHIG00000011454	-	91	47.086	Capra_hircus
ENSGALG00000008618	UPF3B	98	67.010	ENSCHIG00000018011	-	87	81.818	Capra_hircus
ENSGALG00000008618	UPF3B	99	67.073	ENSCHIG00000000247	-	91	67.857	Capra_hircus
ENSGALG00000008618	UPF3B	99	69.102	ENSTSYG00000014690	UPF3B	99	70.213	Carlito_syrichta
ENSGALG00000008618	UPF3B	92	44.018	ENSCCAG00000029813	-	52	65.823	Cebus_capucinus
ENSGALG00000008618	UPF3B	99	69.102	ENSCATG00000017506	UPF3B	99	74.182	Cercocebus_atys
ENSGALG00000008618	UPF3B	99	68.267	ENSCLAG00000003260	UPF3B	99	66.597	Chinchilla_lanigera
ENSGALG00000008618	UPF3B	99	67.276	ENSCSAG00000018348	UPF3B	99	64.257	Chlorocebus_sabaeus
ENSGALG00000008618	UPF3B	100	80.873	ENSCPBG00000020685	UPF3B	100	79.710	Chrysemys_picta_bellii
ENSGALG00000008618	UPF3B	69	74.182	ENSCANG00000029220	UPF3B	99	74.182	Colobus_angolensis_palliatus
ENSGALG00000008618	UPF3B	74	65.642	ENSCGRG00001013643	-	93	65.439	Cricetulus_griseus_chok1gshd
ENSGALG00000008618	UPF3B	99	64.241	ENSCGRG00001006858	-	99	62.218	Cricetulus_griseus_chok1gshd
ENSGALG00000008618	UPF3B	88	66.353	ENSCGRG00000007627	Upf3b	99	64.037	Cricetulus_griseus_crigri
ENSGALG00000008618	UPF3B	93	57.269	ENSCSEG00000002046	upf3b	93	56.051	Cynoglossus_semilaevis
ENSGALG00000008618	UPF3B	95	56.427	ENSCVAG00000005030	upf3b	96	56.427	Cyprinodon_variegatus
ENSGALG00000008618	UPF3B	94	56.484	ENSDARG00000000489	upf3b	99	55.165	Danio_rerio
ENSGALG00000008618	UPF3B	99	66.870	ENSDNOG00000008665	UPF3B	91	66.079	Dasypus_novemcinctus
ENSGALG00000008618	UPF3B	99	66.597	ENSDORG00000006077	Upf3b	99	63.505	Dipodomys_ordii
ENSGALG00000008618	UPF3B	100	67.568	ENSEASG00005012919	UPF3B	99	65.281	Equus_asinus_asinus
ENSGALG00000008618	UPF3B	100	67.568	ENSECAG00000016947	UPF3B	99	65.281	Equus_caballus
ENSGALG00000008618	UPF3B	72	61.383	ENSELUG00000020389	upf3b	99	53.892	Esox_lucius
ENSGALG00000008618	UPF3B	99	68.191	ENSFCAG00000004388	UPF3B	99	66.528	Felis_catus
ENSGALG00000008618	UPF3B	100	80.952	ENSFALG00000001569	UPF3B	100	85.060	Ficedula_albicollis
ENSGALG00000008618	UPF3B	99	68.476	ENSFDAG00000018869	UPF3B	99	66.806	Fukomys_damarensis
ENSGALG00000008618	UPF3B	94	57.301	ENSFHEG00000017895	upf3b	93	56.858	Fundulus_heteroclitus
ENSGALG00000008618	UPF3B	94	55.000	ENSGMOG00000001621	upf3b	98	53.086	Gadus_morhua
ENSGALG00000008618	UPF3B	99	56.000	ENSGAFG00000000829	upf3b	94	57.522	Gambusia_affinis
ENSGALG00000008618	UPF3B	92	58.259	ENSGACG00000017435	upf3b	94	69.455	Gasterosteus_aculeatus
ENSGALG00000008618	UPF3B	100	84.615	ENSGAGG00000001219	UPF3B	100	83.230	Gopherus_agassizii
ENSGALG00000008618	UPF3B	99	69.102	ENSGGOG00000023995	UPF3B	99	74.182	Gorilla_gorilla
ENSGALG00000008618	UPF3B	100	56.818	ENSHBUG00000017393	upf3b	99	56.818	Haplochromis_burtoni
ENSGALG00000008618	UPF3B	99	68.685	ENSHGLG00000019582	-	91	70.805	Heterocephalus_glaber_female
ENSGALG00000008618	UPF3B	84	64.604	ENSHGLG00000011189	-	85	67.222	Heterocephalus_glaber_female
ENSGALG00000008618	UPF3B	99	67.015	ENSHGLG00100002042	-	99	66.180	Heterocephalus_glaber_male
ENSGALG00000008618	UPF3B	84	64.851	ENSHGLG00100001889	-	85	66.111	Heterocephalus_glaber_male
ENSGALG00000008618	UPF3B	99	59.006	ENSHCOG00000017004	upf3b	99	57.796	Hippocampus_comes
ENSGALG00000008618	UPF3B	99	57.320	ENSIPUG00000019249	upf3b	99	56.701	Ictalurus_punctatus
ENSGALG00000008618	UPF3B	99	67.432	ENSSTOG00000001101	UPF3B	99	67.432	Ictidomys_tridecemlineatus
ENSGALG00000008618	UPF3B	99	66.528	ENSJJAG00000000053	Upf3b	91	65.011	Jaculus_jaculus
ENSGALG00000008618	UPF3B	98	56.513	ENSKMAG00000020300	upf3b	99	57.233	Kryptolebias_marmoratus
ENSGALG00000008618	UPF3B	62	66.554	ENSLBEG00000028689	upf3b	57	67.143	Labrus_bergylta
ENSGALG00000008618	UPF3B	100	60.941	ENSLACG00000008691	UPF3B	100	61.336	Latimeria_chalumnae
ENSGALG00000008618	UPF3B	60	71.478	ENSLOCG00000015238	upf3b	99	58.526	Lepisosteus_oculatus
ENSGALG00000008618	UPF3B	99	69.311	ENSLAFG00000001267	UPF3B	91	70.115	Loxodonta_africana
ENSGALG00000008618	UPF3B	99	68.894	ENSMFAG00000045414	UPF3B	99	74.182	Macaca_fascicularis
ENSGALG00000008618	UPF3B	99	68.894	ENSMMUG00000020222	UPF3B	99	74.182	Macaca_mulatta
ENSGALG00000008618	UPF3B	99	68.894	ENSMNEG00000039794	UPF3B	99	74.182	Macaca_nemestrina
ENSGALG00000008618	UPF3B	99	69.102	ENSMLEG00000010999	UPF3B	99	74.182	Mandrillus_leucophaeus
ENSGALG00000008618	UPF3B	100	56.818	ENSMZEG00005007871	upf3b	99	56.818	Maylandia_zebra
ENSGALG00000008618	UPF3B	81	97.158	ENSMGAG00000007728	UPF3B	99	97.158	Meleagris_gallopavo
ENSGALG00000008618	UPF3B	99	61.954	ENSMAUG00000008705	Upf3b	91	61.883	Mesocricetus_auratus
ENSGALG00000008618	UPF3B	69	73.818	ENSMICG00000001743	UPF3B	99	74.182	Microcebus_murinus
ENSGALG00000008618	UPF3B	99	63.618	ENSMOCG00000017893	Upf3b	99	62.805	Microtus_ochrogaster
ENSGALG00000008618	UPF3B	99	55.975	ENSMMOG00000004183	upf3b	98	55.414	Mola_mola
ENSGALG00000008618	UPF3B	89	80.278	ENSMODG00000010232	UPF3B	99	78.837	Monodelphis_domestica
ENSGALG00000008618	UPF3B	69	63.253	ENSMALG00000008042	upf3b	94	57.112	Monopterus_albus
ENSGALG00000008618	UPF3B	99	67.152	MGP_CAROLIEiJ_G0032999	Upf3b	91	65.695	Mus_caroli
ENSGALG00000008618	UPF3B	99	65.904	ENSMUSG00000036572	Upf3b	91	65.471	Mus_musculus
ENSGALG00000008618	UPF3B	99	66.528	MGP_PahariEiJ_G0031543	Upf3b	91	65.022	Mus_pahari
ENSGALG00000008618	UPF3B	99	65.904	MGP_SPRETEiJ_G0034152	Upf3b	91	65.471	Mus_spretus
ENSGALG00000008618	UPF3B	98	69.492	ENSMPUG00000001531	UPF3B	91	68.664	Mustela_putorius_furo
ENSGALG00000008618	UPF3B	99	68.267	ENSMLUG00000010821	UPF3B	91	69.655	Myotis_lucifugus
ENSGALG00000008618	UPF3B	99	64.241	ENSNGAG00000008231	Upf3b	91	64.334	Nannospalax_galili
ENSGALG00000008618	UPF3B	90	72.414	ENSNLEG00000014897	UPF3B	91	68.934	Nomascus_leucogenys
ENSGALG00000008618	UPF3B	65	92.903	ENSMEUG00000015615	UPF3B	74	92.903	Notamacropus_eugenii
ENSGALG00000008618	UPF3B	99	65.063	ENSODEG00000002186	-	99	65.690	Octodon_degus
ENSGALG00000008618	UPF3B	100	57.819	ENSONIG00000002536	upf3b	99	56.584	Oreochromis_niloticus
ENSGALG00000008618	UPF3B	99	66.667	ENSOCUG00000010213	UPF3B	91	68.527	Oryctolagus_cuniculus
ENSGALG00000008618	UPF3B	94	57.965	ENSORLG00000001026	upf3b	96	56.803	Oryzias_latipes
ENSGALG00000008618	UPF3B	94	57.522	ENSORLG00020003758	upf3b	96	56.371	Oryzias_latipes_hni
ENSGALG00000008618	UPF3B	96	57.235	ENSORLG00015012954	upf3b	96	56.803	Oryzias_latipes_hsok
ENSGALG00000008618	UPF3B	94	58.150	ENSOMEG00000014736	upf3b	94	57.616	Oryzias_melastigma
ENSGALG00000008618	UPF3B	99	68.476	ENSOGAG00000004643	-	99	66.597	Otolemur_garnettii
ENSGALG00000008618	UPF3B	98	63.771	ENSOGAG00000033003	-	100	62.924	Otolemur_garnettii
ENSGALG00000008618	UPF3B	99	66.667	ENSOARG00000016051	-	91	67.406	Ovis_aries
ENSGALG00000008618	UPF3B	89	55.012	ENSOARG00000007869	-	99	52.225	Ovis_aries
ENSGALG00000008618	UPF3B	99	69.102	ENSPPAG00000040390	UPF3B	99	74.182	Pan_paniscus
ENSGALG00000008618	UPF3B	99	68.894	ENSPPRG00000023536	UPF3B	99	67.223	Panthera_pardus
ENSGALG00000008618	UPF3B	99	66.126	ENSPTIG00000015264	UPF3B	99	74.909	Panthera_tigris_altaica
ENSGALG00000008618	UPF3B	99	69.102	ENSPTRG00000022228	UPF3B	99	74.182	Pan_troglodytes
ENSGALG00000008618	UPF3B	99	69.102	ENSPANG00000000900	UPF3B	99	74.182	Papio_anubis
ENSGALG00000008618	UPF3B	99	57.113	ENSPKIG00000019226	upf3b	93	64.815	Paramormyrops_kingsleyae
ENSGALG00000008618	UPF3B	54	89.695	ENSPSIG00000005833	UPF3B	92	89.615	Pelodiscus_sinensis
ENSGALG00000008618	UPF3B	60	67.474	ENSPMGG00000016067	upf3b	95	67.857	Periophthalmus_magnuspinnatus
ENSGALG00000008618	UPF3B	99	65.145	ENSPEMG00000012352	Upf3b	99	60.080	Peromyscus_maniculatus_bairdii
ENSGALG00000008618	UPF3B	91	77.027	ENSPCIG00000028914	UPF3B	91	76.310	Phascolarctos_cinereus
ENSGALG00000008618	UPF3B	82	55.649	ENSPCIG00000019590	-	66	72.000	Phascolarctos_cinereus
ENSGALG00000008618	UPF3B	94	57.965	ENSPLAG00000005105	upf3b	94	57.743	Poecilia_latipinna
ENSGALG00000008618	UPF3B	94	57.965	ENSPLAG00000019922	upf3b	94	57.743	Poecilia_latipinna
ENSGALG00000008618	UPF3B	86	51.799	ENSPLAG00000011960	upf3a	56	76.289	Poecilia_latipinna
ENSGALG00000008618	UPF3B	94	58.186	ENSPMEG00000023532	upf3b	94	57.965	Poecilia_mexicana
ENSGALG00000008618	UPF3B	67	73.913	ENSPPYG00000020675	-	95	73.913	Pongo_abelii
ENSGALG00000008618	UPF3B	99	67.276	ENSPCAG00000009464	UPF3B	91	68.080	Procavia_capensis
ENSGALG00000008618	UPF3B	99	68.267	ENSPCOG00000021960	UPF3B	99	74.182	Propithecus_coquereli
ENSGALG00000008618	UPF3B	98	57.526	ENSPVAG00000014075	UPF3B	90	57.596	Pteropus_vampyrus
ENSGALG00000008618	UPF3B	100	56.846	ENSPNYG00000009846	upf3b	99	56.846	Pundamilia_nyererei
ENSGALG00000008618	UPF3B	99	57.992	ENSPNAG00000021528	upf3b	99	58.197	Pygocentrus_nattereri
ENSGALG00000008618	UPF3B	99	65.904	ENSRNOG00000039994	Upf3b	91	65.695	Rattus_norvegicus
ENSGALG00000008618	UPF3B	81	70.619	ENSRBIG00000037219	UPF3B	99	69.211	Rhinopithecus_bieti
ENSGALG00000008618	UPF3B	99	69.102	ENSRROG00000041031	UPF3B	99	74.182	Rhinopithecus_roxellana
ENSGALG00000008618	UPF3B	99	68.894	ENSSBOG00000019740	UPF3B	99	74.545	Saimiri_boliviensis_boliviensis
ENSGALG00000008618	UPF3B	99	75.262	ENSSHAG00000008634	UPF3B	100	74.021	Sarcophilus_harrisii
ENSGALG00000008618	UPF3B	100	59.875	ENSSFOG00015005614	upf3b	100	58.420	Scleropages_formosus
ENSGALG00000008618	UPF3B	98	56.933	ENSSMAG00000012913	upf3b	98	55.462	Scophthalmus_maximus
ENSGALG00000008618	UPF3B	99	56.394	ENSSDUG00000005682	upf3b	99	57.083	Seriola_dumerili
ENSGALG00000008618	UPF3B	99	56.184	ENSSLDG00000003130	upf3b	99	56.875	Seriola_lalandi_dorsalis
ENSGALG00000008618	UPF3B	88	65.446	ENSSARG00000004147	UPF3B	99	62.697	Sorex_araneus
ENSGALG00000008618	UPF3B	100	77.732	ENSSPUG00000013082	UPF3B	100	76.082	Sphenodon_punctatus
ENSGALG00000008618	UPF3B	100	56.846	ENSSPAG00000009989	upf3b	99	56.639	Stegastes_partitus
ENSGALG00000008618	UPF3B	86	49.757	ENSSPAG00000007938	upf3a	72	73.077	Stegastes_partitus
ENSGALG00000008618	UPF3B	99	68.476	ENSSSCG00000012617	UPF3B	91	69.655	Sus_scrofa
ENSGALG00000008618	UPF3B	89	93.662	ENSTGUG00000003413	UPF3B	100	93.662	Taeniopygia_guttata
ENSGALG00000008618	UPF3B	97	57.872	ENSTRUG00000010645	upf3b	99	56.823	Takifugu_rubripes
ENSGALG00000008618	UPF3B	94	54.185	ENSTNIG00000015763	upf3b	94	51.754	Tetraodon_nigroviridis
ENSGALG00000008618	UPF3B	99	56.707	ENSTBEG00000003229	UPF3B	91	58.259	Tupaia_belangeri
ENSGALG00000008618	UPF3B	99	66.460	ENSUAMG00000024565	UPF3B	91	64.786	Ursus_americanus
ENSGALG00000008618	UPF3B	89	68.925	ENSUMAG00000002150	UPF3B	90	63.700	Ursus_maritimus
ENSGALG00000008618	UPF3B	83	69.398	ENSVPAG00000009971	UPF3B	99	66.988	Vicugna_pacos
ENSGALG00000008618	UPF3B	99	66.806	ENSVVUG00000011594	UPF3B	97	72.986	Vulpes_vulpes
ENSGALG00000008618	UPF3B	97	58.898	ENSXETG00000007440	upf3b	84	73.460	Xenopus_tropicalis
ENSGALG00000008618	UPF3B	94	54.688	ENSXCOG00000016586	upf3b	97	65.258	Xiphophorus_couchianus
ENSGALG00000008618	UPF3B	94	58.186	ENSXMAG00000013680	upf3b	97	56.681	Xiphophorus_maculatus