EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGALG00000009091 (Gene tree)
Gene ID: 423914
Gene Symbol: TRUB1
Alias: PUS4
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Gallus_gallus
Status: putative
Strand: Plus strand
Length: 28380 bases
Position: chr6:29011128-29039507
Accession: 423914
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGALP00000057155	TruB_N	PF01509.18	1.5e-49	1	1
ENSGALP00000049931	TruB_N	PF01509.18	2.6e-45	1	1
ENSGALP00000014785	TruB_N	PF01509.18	7.4e-37	1	1
ENSGALP00000072762	TruB_N	PF01509.18	3e-28	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGALT00000103053	TRUB1-203	2737	XM_015288931	ENSGALP00000072762	237 (aa)	XP_015144417	UPI000739BACB
ENSGALT00000014801	TRUB1-202	1597	-	ENSGALP00000014785	218 (aa)	-	E1BRM1
ENSGALT00000079621	TRUB1-201	1371	-	ENSGALP00000049931	228 (aa)	-	A0A1D5PB12
ENSGALT00000065036	TRUB1-204	2883	XM_421776	ENSGALP00000057155	283 (aa)	XP_421776	A0A1D5PW26

Gene Model

Click here to download ENSGALG00000009091's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGALG00000009091's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGALG00000009091	TRUB1	97	74.057	ENSG00000165832	TRUB1	78	75.000	Homo_sapiens
ENSGALG00000009091	TRUB1	86	67.623	ENSAPOG00000020565	trub1	90	67.206	Acanthochromis_polyacanthus
ENSGALG00000009091	TRUB1	96	73.723	ENSAMEG00000014931	TRUB1	78	73.723	Ailuropoda_melanoleuca
ENSGALG00000009091	TRUB1	84	67.391	ENSACIG00000003060	trub1	82	62.753	Amphilophus_citrinellus
ENSGALG00000009091	TRUB1	86	67.623	ENSAOCG00000017188	trub1	90	67.206	Amphiprion_ocellaris
ENSGALG00000009091	TRUB1	87	67.611	ENSAPEG00000015209	trub1	90	67.611	Amphiprion_percula
ENSGALG00000009091	TRUB1	85	67.220	ENSATEG00000023291	trub1	86	67.220	Anabas_testudineus
ENSGALG00000009091	TRUB1	98	91.727	ENSAPLG00000006808	TRUB1	100	91.727	Anas_platyrhynchos
ENSGALG00000009091	TRUB1	94	73.659	ENSACAG00000009282	TRUB1	97	70.149	Anolis_carolinensis
ENSGALG00000009091	TRUB1	97	74.057	ENSANAG00000022870	TRUB1	77	75.000	Aotus_nancymaae
ENSGALG00000009091	TRUB1	92	65.900	ENSACLG00000000823	trub1	94	65.900	Astatotilapia_calliptera
ENSGALG00000009091	TRUB1	92	65.134	ENSAMXG00000015845	trub1	87	65.134	Astyanax_mexicanus
ENSGALG00000009091	TRUB1	96	73.897	ENSBTAG00000012955	TRUB1	77	73.897	Bos_taurus
ENSGALG00000009091	TRUB1	97	74.057	ENSCJAG00000047815	TRUB1	77	75.000	Callithrix_jacchus
ENSGALG00000009091	TRUB1	97	74.057	ENSCAFG00000011688	TRUB1	78	75.000	Canis_familiaris
ENSGALG00000009091	TRUB1	97	74.057	ENSCAFG00020013237	TRUB1	78	75.000	Canis_lupus_dingo
ENSGALG00000009091	TRUB1	96	74.632	ENSCHIG00000020884	TRUB1	81	74.632	Capra_hircus
ENSGALG00000009091	TRUB1	96	74.632	ENSTSYG00000000446	TRUB1	77	74.632	Carlito_syrichta
ENSGALG00000009091	TRUB1	97	63.208	ENSCAPG00000017088	TRUB1	89	66.667	Cavia_aperea
ENSGALG00000009091	TRUB1	80	74.457	ENSCPOG00000040236	-	75	74.457	Cavia_porcellus
ENSGALG00000009091	TRUB1	88	67.822	ENSCPOG00000030129	-	79	67.822	Cavia_porcellus
ENSGALG00000009091	TRUB1	97	74.057	ENSCCAG00000028842	TRUB1	77	75.000	Cebus_capucinus
ENSGALG00000009091	TRUB1	96	74.632	ENSCATG00000033431	TRUB1	78	74.632	Cercocebus_atys
ENSGALG00000009091	TRUB1	80	73.370	ENSCLAG00000008664	TRUB1	75	73.370	Chinchilla_lanigera
ENSGALG00000009091	TRUB1	97	74.057	ENSCSAG00000004891	TRUB1	78	75.000	Chlorocebus_sabaeus
ENSGALG00000009091	TRUB1	96	64.706	ENSCHOG00000011931	TRUB1	78	64.338	Choloepus_hoffmanni
ENSGALG00000009091	TRUB1	99	80.714	ENSCPBG00000003051	TRUB1	97	80.714	Chrysemys_picta_bellii
ENSGALG00000009091	TRUB1	97	74.057	ENSCANG00000029445	TRUB1	78	75.000	Colobus_angolensis_palliatus
ENSGALG00000009091	TRUB1	95	72.947	ENSCGRG00001016772	-	80	72.917	Cricetulus_griseus_chok1gshd
ENSGALG00000009091	TRUB1	95	64.734	ENSCGRG00001010322	-	73	65.441	Cricetulus_griseus_chok1gshd
ENSGALG00000009091	TRUB1	95	72.947	ENSCGRG00000010806	Trub1	83	73.529	Cricetulus_griseus_crigri
ENSGALG00000009091	TRUB1	86	64.344	ENSCSEG00000011261	trub1	88	60.148	Cynoglossus_semilaevis
ENSGALG00000009091	TRUB1	88	66.667	ENSCVAG00000008791	trub1	76	66.667	Cyprinodon_variegatus
ENSGALG00000009091	TRUB1	93	64.885	ENSDARG00000053805	trub1	90	64.885	Danio_rerio
ENSGALG00000009091	TRUB1	96	72.794	ENSDNOG00000001069	TRUB1	78	72.794	Dasypus_novemcinctus
ENSGALG00000009091	TRUB1	95	73.913	ENSDORG00000010431	Trub1	79	73.897	Dipodomys_ordii
ENSGALG00000009091	TRUB1	72	70.290	ENSETEG00000009183	TRUB1	58	70.290	Echinops_telfairi
ENSGALG00000009091	TRUB1	97	74.528	ENSEASG00005014739	TRUB1	78	75.368	Equus_asinus_asinus
ENSGALG00000009091	TRUB1	97	74.528	ENSECAG00000007177	TRUB1	78	75.368	Equus_caballus
ENSGALG00000009091	TRUB1	96	65.074	ENSEEUG00000013993	TRUB1	76	65.074	Erinaceus_europaeus
ENSGALG00000009091	TRUB1	93	64.773	ENSELUG00000000502	trub1	91	64.773	Esox_lucius
ENSGALG00000009091	TRUB1	97	74.528	ENSFCAG00000031927	TRUB1	78	75.368	Felis_catus
ENSGALG00000009091	TRUB1	96	86.124	ENSFALG00000002232	TRUB1	93	86.364	Ficedula_albicollis
ENSGALG00000009091	TRUB1	80	74.457	ENSFDAG00000008140	TRUB1	75	74.457	Fukomys_damarensis
ENSGALG00000009091	TRUB1	94	63.704	ENSFHEG00000004016	trub1	93	63.704	Fundulus_heteroclitus
ENSGALG00000009091	TRUB1	86	63.821	ENSGAFG00000009193	trub1	86	63.821	Gambusia_affinis
ENSGALG00000009091	TRUB1	79	65.116	ENSGACG00000015387	trub1	95	66.495	Gasterosteus_aculeatus
ENSGALG00000009091	TRUB1	98	80.935	ENSGAGG00000009758	TRUB1	78	82.657	Gopherus_agassizii
ENSGALG00000009091	TRUB1	97	74.528	ENSGGOG00000004583	TRUB1	78	75.368	Gorilla_gorilla
ENSGALG00000009091	TRUB1	92	65.900	ENSHBUG00000016787	trub1	94	65.900	Haplochromis_burtoni
ENSGALG00000009091	TRUB1	96	71.898	ENSHGLG00000015314	TRUB1	79	71.898	Heterocephalus_glaber_female
ENSGALG00000009091	TRUB1	80	73.370	ENSHGLG00100009183	TRUB1	78	73.370	Heterocephalus_glaber_male
ENSGALG00000009091	TRUB1	87	67.611	ENSHCOG00000017877	trub1	89	67.611	Hippocampus_comes
ENSGALG00000009091	TRUB1	87	67.206	ENSIPUG00000017559	trub1	87	67.206	Ictalurus_punctatus
ENSGALG00000009091	TRUB1	96	73.897	ENSSTOG00000003641	TRUB1	81	73.897	Ictidomys_tridecemlineatus
ENSGALG00000009091	TRUB1	97	71.090	ENSJJAG00000011800	Trub1	80	72.694	Jaculus_jaculus
ENSGALG00000009091	TRUB1	87	67.206	ENSKMAG00000006232	trub1	89	67.206	Kryptolebias_marmoratus
ENSGALG00000009091	TRUB1	92	65.000	ENSLBEG00000026722	trub1	91	65.000	Labrus_bergylta
ENSGALG00000009091	TRUB1	93	73.664	ENSLACG00000014885	TRUB1	88	73.664	Latimeria_chalumnae
ENSGALG00000009091	TRUB1	97	67.636	ENSLOCG00000012979	trub1	94	67.636	Lepisosteus_oculatus
ENSGALG00000009091	TRUB1	89	74.308	ENSLAFG00000015452	TRUB1	80	70.968	Loxodonta_africana
ENSGALG00000009091	TRUB1	97	74.057	ENSMFAG00000031767	TRUB1	78	75.000	Macaca_fascicularis
ENSGALG00000009091	TRUB1	97	74.057	ENSMMUG00000001902	TRUB1	78	75.000	Macaca_mulatta
ENSGALG00000009091	TRUB1	96	70.588	ENSMNEG00000044646	TRUB1	77	70.588	Macaca_nemestrina
ENSGALG00000009091	TRUB1	97	74.057	ENSMLEG00000042655	TRUB1	78	75.000	Mandrillus_leucophaeus
ENSGALG00000009091	TRUB1	92	65.900	ENSMZEG00005024095	trub1	94	65.900	Maylandia_zebra
ENSGALG00000009091	TRUB1	99	96.797	ENSMGAG00000011135	TRUB1	97	96.797	Meleagris_gallopavo
ENSGALG00000009091	TRUB1	95	70.531	ENSMAUG00000011101	Trub1	80	72.059	Mesocricetus_auratus
ENSGALG00000009091	TRUB1	96	74.632	ENSMICG00000016324	TRUB1	78	74.632	Microcebus_murinus
ENSGALG00000009091	TRUB1	95	71.498	ENSMOCG00000017759	Trub1	82	72.059	Microtus_ochrogaster
ENSGALG00000009091	TRUB1	96	77.574	ENSMODG00000009676	TRUB1	76	77.091	Monodelphis_domestica
ENSGALG00000009091	TRUB1	94	71.161	MGP_CAROLIEiJ_G0023100	Trub1	80	71.218	Mus_caroli
ENSGALG00000009091	TRUB1	94	70.412	ENSMUSG00000025086	Trub1	80	70.480	Mus_musculus
ENSGALG00000009091	TRUB1	95	70.849	MGP_PahariEiJ_G0014588	Trub1	80	70.849	Mus_pahari
ENSGALG00000009091	TRUB1	94	70.412	MGP_SPRETEiJ_G0024021	Trub1	80	70.480	Mus_spretus
ENSGALG00000009091	TRUB1	97	74.057	ENSMPUG00000003556	TRUB1	78	75.000	Mustela_putorius_furo
ENSGALG00000009091	TRUB1	96	75.000	ENSMLUG00000017686	TRUB1	80	75.000	Myotis_lucifugus
ENSGALG00000009091	TRUB1	96	73.897	ENSNGAG00000018682	Trub1	78	73.897	Nannospalax_galili
ENSGALG00000009091	TRUB1	87	68.016	ENSNBRG00000023393	trub1	94	65.414	Neolamprologus_brichardi
ENSGALG00000009091	TRUB1	97	74.528	ENSNLEG00000016345	TRUB1	78	75.368	Nomascus_leucogenys
ENSGALG00000009091	TRUB1	79	78.571	ENSMEUG00000006603	TRUB1	76	79.412	Notamacropus_eugenii
ENSGALG00000009091	TRUB1	97	71.636	ENSOPRG00000009371	TRUB1	80	71.636	Ochotona_princeps
ENSGALG00000009091	TRUB1	97	69.811	ENSODEG00000010854	TRUB1	78	70.588	Octodon_degus
ENSGALG00000009091	TRUB1	92	65.517	ENSONIG00000007249	trub1	94	65.517	Oreochromis_niloticus
ENSGALG00000009091	TRUB1	97	75.636	ENSOANG00000001556	TRUB1	91	75.636	Ornithorhynchus_anatinus
ENSGALG00000009091	TRUB1	96	73.897	ENSOCUG00000009456	TRUB1	79	73.897	Oryctolagus_cuniculus
ENSGALG00000009091	TRUB1	85	67.635	ENSORLG00000029719	trub1	86	67.635	Oryzias_latipes
ENSGALG00000009091	TRUB1	85	67.220	ENSORLG00020016767	trub1	85	67.220	Oryzias_latipes_hni
ENSGALG00000009091	TRUB1	85	67.635	ENSORLG00015014728	trub1	86	67.635	Oryzias_latipes_hsok
ENSGALG00000009091	TRUB1	86	65.714	ENSOMEG00000014556	trub1	86	65.714	Oryzias_melastigma
ENSGALG00000009091	TRUB1	97	74.057	ENSOGAG00000015895	TRUB1	78	75.000	Otolemur_garnettii
ENSGALG00000009091	TRUB1	97	72.897	ENSOARG00000015591	TRUB1	79	72.401	Ovis_aries
ENSGALG00000009091	TRUB1	97	74.528	ENSPPAG00000043645	TRUB1	78	75.368	Pan_paniscus
ENSGALG00000009091	TRUB1	97	74.057	ENSPPRG00000007096	TRUB1	78	75.000	Panthera_pardus
ENSGALG00000009091	TRUB1	97	74.528	ENSPTIG00000006378	TRUB1	78	75.368	Panthera_tigris_altaica
ENSGALG00000009091	TRUB1	97	74.528	ENSPTRG00000002964	TRUB1	78	75.368	Pan_troglodytes
ENSGALG00000009091	TRUB1	97	74.057	ENSPANG00000020712	TRUB1	78	75.000	Papio_anubis
ENSGALG00000009091	TRUB1	77	67.665	ENSPKIG00000003852	trub1	72	67.665	Paramormyrops_kingsleyae
ENSGALG00000009091	TRUB1	99	79.225	ENSPSIG00000012877	TRUB1	98	79.225	Pelodiscus_sinensis
ENSGALG00000009091	TRUB1	89	64.427	ENSPMGG00000000075	trub1	91	64.427	Periophthalmus_magnuspinnatus
ENSGALG00000009091	TRUB1	96	74.265	ENSPEMG00000011156	Trub1	80	74.265	Peromyscus_maniculatus_bairdii
ENSGALG00000009091	TRUB1	96	76.838	ENSPCIG00000009729	TRUB1	76	75.089	Phascolarctos_cinereus
ENSGALG00000009091	TRUB1	87	65.587	ENSPFOG00000009950	trub1	90	65.587	Poecilia_formosa
ENSGALG00000009091	TRUB1	87	65.587	ENSPLAG00000013855	trub1	87	65.587	Poecilia_latipinna
ENSGALG00000009091	TRUB1	87	65.587	ENSPMEG00000009064	trub1	89	65.587	Poecilia_mexicana
ENSGALG00000009091	TRUB1	87	66.802	ENSPREG00000003343	trub1	89	66.802	Poecilia_reticulata
ENSGALG00000009091	TRUB1	97	74.057	ENSPPYG00000002676	TRUB1	78	75.000	Pongo_abelii
ENSGALG00000009091	TRUB1	98	63.799	ENSPCAG00000008427	TRUB1	79	63.799	Procavia_capensis
ENSGALG00000009091	TRUB1	99	70.233	ENSPCOG00000024360	TRUB1	77	70.221	Propithecus_coquereli
ENSGALG00000009091	TRUB1	80	76.630	ENSPVAG00000007575	TRUB1	77	77.833	Pteropus_vampyrus
ENSGALG00000009091	TRUB1	92	65.900	ENSPNYG00000018614	trub1	94	65.900	Pundamilia_nyererei
ENSGALG00000009091	TRUB1	91	63.317	ENSPNAG00000006881	trub1	84	55.985	Pygocentrus_nattereri
ENSGALG00000009091	TRUB1	95	70.849	ENSRNOG00000017321	Trub1	79	70.849	Rattus_norvegicus
ENSGALG00000009091	TRUB1	96	66.544	ENSRBIG00000033423	TRUB1	76	66.544	Rhinopithecus_bieti
ENSGALG00000009091	TRUB1	97	74.057	ENSRROG00000033902	TRUB1	78	75.000	Rhinopithecus_roxellana
ENSGALG00000009091	TRUB1	97	74.057	ENSSBOG00000024237	TRUB1	77	75.000	Saimiri_boliviensis_boliviensis
ENSGALG00000009091	TRUB1	96	75.355	ENSSHAG00000009346	TRUB1	85	73.541	Sarcophilus_harrisii
ENSGALG00000009091	TRUB1	89	69.112	ENSSFOG00015022124	trub1	88	69.112	Scleropages_formosus
ENSGALG00000009091	TRUB1	87	67.206	ENSSMAG00000001020	trub1	88	67.206	Scophthalmus_maximus
ENSGALG00000009091	TRUB1	84	67.364	ENSSDUG00000016414	trub1	89	67.206	Seriola_dumerili
ENSGALG00000009091	TRUB1	84	67.782	ENSSLDG00000015486	trub1	89	67.611	Seriola_lalandi_dorsalis
ENSGALG00000009091	TRUB1	97	80.292	ENSSPUG00000001642	TRUB1	94	80.292	Sphenodon_punctatus
ENSGALG00000009091	TRUB1	87	68.016	ENSSPAG00000001217	trub1	89	68.016	Stegastes_partitus
ENSGALG00000009091	TRUB1	96	73.529	ENSSSCG00000010653	TRUB1	79	73.333	Sus_scrofa
ENSGALG00000009091	TRUB1	95	87.778	ENSTGUG00000010971	TRUB1	100	86.429	Taeniopygia_guttata
ENSGALG00000009091	TRUB1	95	58.937	ENSTBEG00000002880	TRUB1	90	62.281	Tupaia_belangeri
ENSGALG00000009091	TRUB1	80	76.087	ENSTTRG00000005767	TRUB1	77	77.340	Tursiops_truncatus
ENSGALG00000009091	TRUB1	97	74.057	ENSUAMG00000024876	TRUB1	78	75.000	Ursus_americanus
ENSGALG00000009091	TRUB1	96	74.632	ENSUMAG00000002411	TRUB1	81	74.632	Ursus_maritimus
ENSGALG00000009091	TRUB1	97	75.472	ENSVPAG00000005507	TRUB1	78	76.103	Vicugna_pacos
ENSGALG00000009091	TRUB1	97	74.057	ENSVVUG00000010085	TRUB1	66	75.000	Vulpes_vulpes
ENSGALG00000009091	TRUB1	98	65.942	ENSXETG00000023828	trub1	100	65.942	Xenopus_tropicalis
ENSGALG00000009091	TRUB1	86	64.898	ENSXCOG00000017847	trub1	87	64.898	Xiphophorus_couchianus
ENSGALG00000009091	TRUB1	87	65.182	ENSXMAG00000014701	trub1	89	65.182	Xiphophorus_maculatus