EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSGALG00000011932 (Gene tree)
Gene ID: 395767
Gene Symbol: XRCC6
Alias: KU70
Full Name: Gallus gallus X-ray repair complementing defective repair in Chinese hamster cells 6 (XRCC6)%2C mRNA.
Gene Type: protein_coding
Species: Gallus_gallus
Status: putative
Strand: Minus strand
Length: 13091 bases
Position: chr1:49558421-49571511
Accession: NM_204927
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGALP00000037185	SAP	PF02037.27	2.7e-11	1	1
ENSGALP00000053314	SAP	PF02037.27	2.9e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGALT00000037980	-	2171	-	ENSGALP00000037185	614 (aa)	-	F1NED5
ENSGALT00000053871	-	2222	-	ENSGALP00000053314	647 (aa)	-	A0A1D5PKF7

Gene Model

Click here to download ENSGALG00000011932's gene model file

Pathways

Pathway ID	Pathway Name	Source
gga03450	Non-homologous end-joining	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSGALG00000011932's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGALG00000011932	XRCC6	99	69.558	ENSG00000196419	XRCC6	99	69.722	Homo_sapiens
ENSGALG00000011932	XRCC6	99	58.170	ENSAPOG00000012704	xrcc6	99	58.170	Acanthochromis_polyacanthus
ENSGALG00000011932	XRCC6	99	59.314	ENSACIG00000021277	xrcc6	99	59.150	Amphilophus_citrinellus
ENSGALG00000011932	XRCC6	99	58.564	ENSAOCG00000021344	xrcc6	99	58.401	Amphiprion_ocellaris
ENSGALG00000011932	XRCC6	99	59.217	ENSAPEG00000020712	xrcc6	99	59.054	Amphiprion_percula
ENSGALG00000011932	XRCC6	99	57.536	ENSATEG00000007119	xrcc6	99	57.374	Anabas_testudineus
ENSGALG00000011932	XRCC6	89	90.476	ENSAPLG00000004469	XRCC6	99	90.476	Anas_platyrhynchos
ENSGALG00000011932	XRCC6	99	69.885	ENSANAG00000018684	XRCC6	98	71.455	Aotus_nancymaae
ENSGALG00000011932	XRCC6	99	60.227	ENSANAG00000023445	-	99	60.390	Aotus_nancymaae
ENSGALG00000011932	XRCC6	99	61.538	ENSANAG00000035230	-	99	61.702	Aotus_nancymaae
ENSGALG00000011932	XRCC6	99	62.029	ENSANAG00000020017	-	99	62.029	Aotus_nancymaae
ENSGALG00000011932	XRCC6	99	58.333	ENSACLG00000018608	xrcc6	99	58.170	Astatotilapia_calliptera
ENSGALG00000011932	XRCC6	99	61.264	ENSAMXG00000007545	xrcc6	100	61.102	Astyanax_mexicanus
ENSGALG00000011932	XRCC6	99	69.885	ENSCJAG00000045512	XRCC6	99	70.049	Callithrix_jacchus
ENSGALG00000011932	XRCC6	99	68.412	ENSTSYG00000011348	XRCC6	99	68.576	Carlito_syrichta
ENSGALG00000011932	XRCC6	99	65.957	ENSCCAG00000030041	-	95	65.957	Cebus_capucinus
ENSGALG00000011932	XRCC6	91	71.385	ENSCCAG00000030468	-	96	75.391	Cebus_capucinus
ENSGALG00000011932	XRCC6	99	55.155	ENSCCAG00000035711	-	99	55.319	Cebus_capucinus
ENSGALG00000011932	XRCC6	100	57.492	ENSCCAG00000037663	-	97	57.492	Cebus_capucinus
ENSGALG00000011932	XRCC6	99	69.885	ENSCATG00000042366	XRCC6	98	71.355	Cercocebus_atys
ENSGALG00000011932	XRCC6	99	69.231	ENSCLAG00000016669	XRCC6	99	69.231	Chinchilla_lanigera
ENSGALG00000011932	XRCC6	99	69.885	ENSCSAG00000005784	XRCC6	99	70.049	Chlorocebus_sabaeus
ENSGALG00000011932	XRCC6	99	78.956	ENSCPBG00000020535	XRCC6	99	78.630	Chrysemys_picta_bellii
ENSGALG00000011932	XRCC6	98	35.703	ENSCING00000000633	-	96	36.181	Ciona_intestinalis
ENSGALG00000011932	XRCC6	99	69.885	ENSCANG00000031032	XRCC6	99	70.049	Colobus_angolensis_palliatus
ENSGALG00000011932	XRCC6	99	62.029	ENSCGRG00001019029	Xrcc6	99	61.866	Cricetulus_griseus_chok1gshd
ENSGALG00000011932	XRCC6	99	68.576	ENSCGRG00000001528	Xrcc6	99	68.576	Cricetulus_griseus_crigri
ENSGALG00000011932	XRCC6	91	65.000	ENSCSEG00000020434	xrcc6	96	65.000	Cynoglossus_semilaevis
ENSGALG00000011932	XRCC6	94	60.788	ENSCVAG00000002189	xrcc6	99	59.121	Cyprinodon_variegatus
ENSGALG00000011932	XRCC6	99	60.032	ENSDARG00000071551	xrcc6	99	59.223	Danio_rerio
ENSGALG00000011932	XRCC6	78	62.621	ENSETEG00000015333	-	78	62.621	Echinops_telfairi
ENSGALG00000011932	XRCC6	99	69.394	ENSEASG00005001514	XRCC6	99	69.394	Equus_asinus_asinus
ENSGALG00000011932	XRCC6	99	68.903	ENSECAG00000017563	XRCC6	99	70.232	Equus_caballus
ENSGALG00000011932	XRCC6	99	57.749	ENSELUG00000020301	xrcc6	99	57.586	Esox_lucius
ENSGALG00000011932	XRCC6	100	83.089	ENSFALG00000011908	XRCC6	97	83.577	Ficedula_albicollis
ENSGALG00000011932	XRCC6	99	59.772	ENSFHEG00000016833	xrcc6	99	59.609	Fundulus_heteroclitus
ENSGALG00000011932	XRCC6	99	50.980	ENSGMOG00000013524	xrcc6	95	58.140	Gadus_morhua
ENSGALG00000011932	XRCC6	94	58.904	ENSGAFG00000008130	xrcc6	99	57.492	Gambusia_affinis
ENSGALG00000011932	XRCC6	99	57.749	ENSGACG00000004868	xrcc6	99	57.749	Gasterosteus_aculeatus
ENSGALG00000011932	XRCC6	99	77.814	ENSGAGG00000017518	XRCC6	99	77.488	Gopherus_agassizii
ENSGALG00000011932	XRCC6	99	69.558	ENSGGOG00000015885	XRCC6	99	69.722	Gorilla_gorilla
ENSGALG00000011932	XRCC6	91	59.431	ENSHBUG00000023281	xrcc6	99	59.431	Haplochromis_burtoni
ENSGALG00000011932	XRCC6	99	68.412	ENSHGLG00000018078	XRCC6	99	68.412	Heterocephalus_glaber_female
ENSGALG00000011932	XRCC6	99	68.412	ENSHGLG00100011264	XRCC6	99	68.412	Heterocephalus_glaber_male
ENSGALG00000011932	XRCC6	90	66.667	ENSHCOG00000009821	xrcc6	96	65.000	Hippocampus_comes
ENSGALG00000011932	XRCC6	99	60.292	ENSIPUG00000000767	xrcc6	99	60.130	Ictalurus_punctatus
ENSGALG00000011932	XRCC6	99	69.067	ENSSTOG00000009490	XRCC6	99	68.903	Ictidomys_tridecemlineatus
ENSGALG00000011932	XRCC6	99	62.520	ENSJJAG00000017136	Xrcc6	99	63.502	Jaculus_jaculus
ENSGALG00000011932	XRCC6	99	58.699	ENSKMAG00000002141	xrcc6	99	58.537	Kryptolebias_marmoratus
ENSGALG00000011932	XRCC6	99	58.995	ENSLBEG00000002691	xrcc6	96	62.791	Labrus_bergylta
ENSGALG00000011932	XRCC6	84	58.252	ENSLOCG00000011533	xrcc6	99	58.252	Lepisosteus_oculatus
ENSGALG00000011932	XRCC6	99	69.885	ENSMFAG00000003352	XRCC6	98	71.639	Macaca_fascicularis
ENSGALG00000011932	XRCC6	99	69.885	ENSMMUG00000001856	XRCC6	99	70.049	Macaca_mulatta
ENSGALG00000011932	XRCC6	99	69.885	ENSMNEG00000035076	XRCC6	99	71.350	Macaca_nemestrina
ENSGALG00000011932	XRCC6	99	69.885	ENSMLEG00000019869	XRCC6	99	70.049	Mandrillus_leucophaeus
ENSGALG00000011932	XRCC6	95	57.653	ENSMAMG00000003405	xrcc6	97	57.653	Mastacembelus_armatus
ENSGALG00000011932	XRCC6	99	56.796	ENSMAMG00000003368	xrcc6	99	56.796	Mastacembelus_armatus
ENSGALG00000011932	XRCC6	99	58.170	ENSMZEG00005028080	xrcc6	99	58.007	Maylandia_zebra
ENSGALG00000011932	XRCC6	100	95.765	ENSMGAG00000012146	XRCC6	99	95.765	Meleagris_gallopavo
ENSGALG00000011932	XRCC6	99	67.758	ENSMAUG00000017340	Xrcc6	99	67.758	Mesocricetus_auratus
ENSGALG00000011932	XRCC6	99	68.085	ENSMOCG00000015717	Xrcc6	99	68.085	Microtus_ochrogaster
ENSGALG00000011932	XRCC6	99	57.749	ENSMMOG00000003536	xrcc6	99	57.096	Mola_mola
ENSGALG00000011932	XRCC6	99	58.497	ENSMALG00000013912	xrcc6	94	58.333	Monopterus_albus
ENSGALG00000011932	XRCC6	99	62.357	MGP_CAROLIEiJ_G0020067	Xrcc6	99	62.193	Mus_caroli
ENSGALG00000011932	XRCC6	99	66.939	ENSMUSG00000022471	Xrcc6	99	66.776	Mus_musculus
ENSGALG00000011932	XRCC6	99	67.103	MGP_PahariEiJ_G0020069	Xrcc6	99	66.939	Mus_pahari
ENSGALG00000011932	XRCC6	95	68.322	MGP_SPRETEiJ_G0020967	Xrcc6	99	68.503	Mus_spretus
ENSGALG00000011932	XRCC6	99	66.939	ENSNGAG00000013750	Xrcc6	99	66.939	Nannospalax_galili
ENSGALG00000011932	XRCC6	99	58.497	ENSNBRG00000004125	xrcc6	99	58.333	Neolamprologus_brichardi
ENSGALG00000011932	XRCC6	95	69.072	ENSOPRG00000002386	XRCC6	100	69.072	Ochotona_princeps
ENSGALG00000011932	XRCC6	99	66.612	ENSODEG00000015847	XRCC6	99	66.612	Octodon_degus
ENSGALG00000011932	XRCC6	99	59.314	ENSONIG00000019715	xrcc6	95	66.667	Oreochromis_niloticus
ENSGALG00000011932	XRCC6	67	75.669	ENSOANG00000011328	XRCC6	99	75.669	Ornithorhynchus_anatinus
ENSGALG00000011932	XRCC6	99	68.903	ENSOCUG00000006948	XRCC6	99	68.903	Oryctolagus_cuniculus
ENSGALG00000011932	XRCC6	99	58.958	ENSORLG00020007820	xrcc6	99	58.795	Oryzias_latipes_hni
ENSGALG00000011932	XRCC6	99	58.958	ENSORLG00015006406	xrcc6	99	58.795	Oryzias_latipes_hsok
ENSGALG00000011932	XRCC6	99	58.958	ENSOMEG00000008998	xrcc6	96	61.905	Oryzias_melastigma
ENSGALG00000011932	XRCC6	99	67.921	ENSOGAG00000008821	XRCC6	99	67.594	Otolemur_garnettii
ENSGALG00000011932	XRCC6	91	67.397	ENSPPAG00000037167	XRCC6	97	72.519	Pan_paniscus
ENSGALG00000011932	XRCC6	99	69.558	ENSPTRG00000022548	XRCC6	99	71.134	Pan_troglodytes
ENSGALG00000011932	XRCC6	99	69.558	ENSPTRG00000045824	XRCC6	99	71.134	Pan_troglodytes
ENSGALG00000011932	XRCC6	99	69.722	ENSPANG00000001252	XRCC6	99	71.184	Papio_anubis
ENSGALG00000011932	XRCC6	99	61.102	ENSPKIG00000003974	xrcc6	99	60.940	Paramormyrops_kingsleyae
ENSGALG00000011932	XRCC6	99	57.471	ENSPMGG00000014220	xrcc6	100	57.307	Periophthalmus_magnuspinnatus
ENSGALG00000011932	XRCC6	99	66.776	ENSPEMG00000023446	Xrcc6	99	66.612	Peromyscus_maniculatus_bairdii
ENSGALG00000011932	XRCC6	99	69.608	ENSPCIG00000026409	XRCC6	99	69.608	Phascolarctos_cinereus
ENSGALG00000011932	XRCC6	94	60.959	ENSPFOG00000017173	xrcc6	99	59.446	Poecilia_formosa
ENSGALG00000011932	XRCC6	94	60.616	ENSPLAG00000000562	xrcc6	99	59.121	Poecilia_latipinna
ENSGALG00000011932	XRCC6	99	59.609	ENSPMEG00000018478	xrcc6	99	59.446	Poecilia_mexicana
ENSGALG00000011932	XRCC6	99	58.117	ENSPREG00000020957	xrcc6	93	57.955	Poecilia_reticulata
ENSGALG00000011932	XRCC6	99	61.047	ENSPPYG00000011876	XRCC6	99	61.211	Pongo_abelii
ENSGALG00000011932	XRCC6	99	67.267	ENSPVAG00000001168	XRCC6	99	67.267	Pteropus_vampyrus
ENSGALG00000011932	XRCC6	99	58.170	ENSPNYG00000003815	xrcc6	99	55.210	Pundamilia_nyererei
ENSGALG00000011932	XRCC6	99	67.267	ENSRNOG00000006392	Xrcc6	99	67.103	Rattus_norvegicus
ENSGALG00000011932	XRCC6	99	64.975	ENSRBIG00000039794	XRCC6	95	71.571	Rhinopithecus_bieti
ENSGALG00000011932	XRCC6	99	69.885	ENSRROG00000030297	XRCC6	99	70.049	Rhinopithecus_roxellana
ENSGALG00000011932	XRCC6	66	60.741	ENSSBOG00000024724	-	99	60.741	Saimiri_boliviensis_boliviensis
ENSGALG00000011932	XRCC6	99	68.627	ENSSHAG00000010790	XRCC6	99	68.627	Sarcophilus_harrisii
ENSGALG00000011932	XRCC6	99	60.940	ENSSFOG00015014409	xrcc6	99	60.454	Scleropages_formosus
ENSGALG00000011932	XRCC6	99	59.150	ENSSMAG00000006496	xrcc6	99	58.987	Scophthalmus_maximus
ENSGALG00000011932	XRCC6	99	58.023	ENSSDUG00000007542	xrcc6	99	57.861	Seriola_dumerili
ENSGALG00000011932	XRCC6	99	58.023	ENSSLDG00000009974	xrcc6	99	57.861	Seriola_lalandi_dorsalis
ENSGALG00000011932	XRCC6	99	76.020	ENSSPUG00000012086	XRCC6	99	75.856	Sphenodon_punctatus
ENSGALG00000011932	XRCC6	99	59.609	ENSSPAG00000015199	xrcc6	99	59.446	Stegastes_partitus
ENSGALG00000011932	XRCC6	95	86.473	ENSTGUG00000009852	-	99	84.804	Taeniopygia_guttata
ENSGALG00000011932	XRCC6	99	56.046	ENSTRUG00000017070	xrcc6	99	56.046	Takifugu_rubripes
ENSGALG00000011932	XRCC6	94	56.853	ENSTNIG00000012947	xrcc6	99	56.853	Tetraodon_nigroviridis
ENSGALG00000011932	XRCC6	94	65.345	ENSTBEG00000011736	XRCC6	99	65.345	Tupaia_belangeri
ENSGALG00000011932	XRCC6	99	56.956	ENSTTRG00000006749	XRCC6	99	57.610	Tursiops_truncatus
ENSGALG00000011932	XRCC6	99	58.143	ENSXMAG00000009691	xrcc6	99	57.980	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000723	telomere maintenance	21873635.	IBA	Process
GO:0000784	nuclear chromosome, telomeric region	21873635.	IBA	Component
GO:0003684	damaged DNA binding	-	IEA	Function
GO:0003690	double-stranded DNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	ISS	Function
GO:0004003	ATP-dependent DNA helicase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005654	nucleoplasm	-	TAS	Component
GO:0006303	double-strand break repair via nonhomologous end joining	21873635.	IBA	Process
GO:0006303	double-strand break repair via nonhomologous end joining	-	ISS	Process
GO:0006303	double-strand break repair via nonhomologous end joining	-	TAS	Process
GO:0006310	DNA recombination	-	IEA	Process
GO:0032508	DNA duplex unwinding	-	IEA	Process
GO:0042162	telomeric DNA binding	21873635.	IBA	Function
GO:0043564	Ku70:Ku80 complex	21873635.	IBA	Component
GO:0043564	Ku70:Ku80 complex	-	ISS	Component
GO:0045892	negative regulation of transcription, DNA-templated	-	ISS	Process
GO:0051575	5'-deoxyribose-5-phosphate lyase activity	-	ISS	Function
GO:0070419	nonhomologous end joining complex	-	ISS	Component
GO:0071480	cellular response to gamma radiation	21873635.	IBA	Process
GO:0071480	cellular response to gamma radiation	-	ISS	Process
GO:0071481	cellular response to X-ray	21873635.	IBA	Process
GO:1990904	ribonucleoprotein complex	-	ISS	Component