EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSGALG00000012484 (Gene tree)
Gene ID: 424316
Gene Symbol: RIF1
Alias: FLJ10599|FLJ12870
Full Name: Telomere-associated protein RIF1
Gene Type: protein_coding
Species: Gallus_gallus
Status: putative
Strand: Plus strand
Length: 26568 bases
Position: chr7:35143826-35170393
Accession: E1C2U2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGALP00000056658	Rif1_N	PF12231.8	2.6e-48	1	1
ENSGALP00000036991	Rif1_N	PF12231.8	2.6e-48	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGALT00000037786	RIF1-201	6792	-	ENSGALP00000036991	2168 (aa)	-	E1C2U2
ENSGALT00000070525	RIF1-202	6714	-	ENSGALP00000056658	2142 (aa)	-	E1C2U2

Gene Model

Click here to download ENSGALG00000012484's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGALG00000012484's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGALG00000012484	RIF1	91	64.412	ENSG00000080345	RIF1	82	70.833	Homo_sapiens
ENSGALG00000012484	RIF1	66	51.215	ENSAPOG00000011073	rif1	59	51.125	Acanthochromis_polyacanthus
ENSGALG00000012484	RIF1	91	65.192	ENSAMEG00000008461	RIF1	79	64.897	Ailuropoda_melanoleuca
ENSGALG00000012484	RIF1	70	51.561	ENSACIG00000017765	rif1	58	55.326	Amphilophus_citrinellus
ENSGALG00000012484	RIF1	52	49.596	ENSAOCG00000017231	rif1	59	50.314	Amphiprion_ocellaris
ENSGALG00000012484	RIF1	81	44.633	ENSATEG00000022887	rif1	62	51.551	Anabas_testudineus
ENSGALG00000012484	RIF1	100	76.247	ENSAPLG00000007092	RIF1	95	76.110	Anas_platyrhynchos
ENSGALG00000012484	RIF1	99	51.208	ENSACAG00000003714	RIF1	93	50.991	Anolis_carolinensis
ENSGALG00000012484	RIF1	91	65.588	ENSANAG00000024840	RIF1	79	65.588	Aotus_nancymaae
ENSGALG00000012484	RIF1	99	53.138	ENSBTAG00000021020	RIF1	88	56.459	Bos_taurus
ENSGALG00000012484	RIF1	91	65.294	ENSCJAG00000003138	RIF1	79	65.294	Callithrix_jacchus
ENSGALG00000012484	RIF1	91	67.059	ENSCAFG00000005670	RIF1	77	67.059	Canis_familiaris
ENSGALG00000012484	RIF1	96	56.388	ENSCAFG00020016401	RIF1	80	67.059	Canis_lupus_dingo
ENSGALG00000012484	RIF1	94	57.212	ENSCHIG00000020327	RIF1	82	57.212	Capra_hircus
ENSGALG00000012484	RIF1	95	65.192	ENSTSYG00000008861	RIF1	84	64.897	Carlito_syrichta
ENSGALG00000012484	RIF1	82	56.283	ENSCAPG00000008957	RIF1	92	55.844	Cavia_aperea
ENSGALG00000012484	RIF1	92	60.733	ENSCPOG00000037898	RIF1	80	61.111	Cavia_porcellus
ENSGALG00000012484	RIF1	91	66.471	ENSCCAG00000024760	RIF1	79	66.471	Cebus_capucinus
ENSGALG00000012484	RIF1	91	64.602	ENSCATG00000033353	RIF1	79	64.897	Cercocebus_atys
ENSGALG00000012484	RIF1	90	62.941	ENSCLAG00000001517	RIF1	81	62.941	Chinchilla_lanigera
ENSGALG00000012484	RIF1	91	65.000	ENSCSAG00000016089	RIF1	79	65.000	Chlorocebus_sabaeus
ENSGALG00000012484	RIF1	88	79.730	ENSCHOG00000007187	RIF1	76	79.730	Choloepus_hoffmanni
ENSGALG00000012484	RIF1	96	79.238	ENSCPBG00000025885	RIF1	93	78.034	Chrysemys_picta_bellii
ENSGALG00000012484	RIF1	86	71.552	ENSCANG00000028962	RIF1	78	71.552	Colobus_angolensis_palliatus
ENSGALG00000012484	RIF1	96	52.739	ENSCGRG00001024589	Rif1	81	57.360	Cricetulus_griseus_chok1gshd
ENSGALG00000012484	RIF1	96	53.920	ENSCGRG00000010713	Rif1	82	57.360	Cricetulus_griseus_crigri
ENSGALG00000012484	RIF1	89	66.768	ENSDNOG00000011194	RIF1	75	66.768	Dasypus_novemcinctus
ENSGALG00000012484	RIF1	69	58.630	ENSETEG00000012421	RIF1	69	58.541	Echinops_telfairi
ENSGALG00000012484	RIF1	91	64.955	ENSEASG00005023434	RIF1	73	87.379	Equus_asinus_asinus
ENSGALG00000012484	RIF1	88	75.148	ENSECAG00000012679	RIF1	79	75.148	Equus_caballus
ENSGALG00000012484	RIF1	67	52.301	ENSELUG00000006826	rif1	51	52.035	Esox_lucius
ENSGALG00000012484	RIF1	91	65.588	ENSFCAG00000029742	RIF1	79	65.487	Felis_catus
ENSGALG00000012484	RIF1	99	66.435	ENSFALG00000013874	RIF1	100	66.512	Ficedula_albicollis
ENSGALG00000012484	RIF1	94	61.273	ENSFDAG00000006538	RIF1	81	61.273	Fukomys_damarensis
ENSGALG00000012484	RIF1	54	58.904	ENSGMOG00000003517	rif1	69	59.420	Gadus_morhua
ENSGALG00000012484	RIF1	74	47.215	ENSGAFG00000017196	rif1	60	54.564	Gambusia_affinis
ENSGALG00000012484	RIF1	62	57.438	ENSGACG00000008579	rif1	62	55.814	Gasterosteus_aculeatus
ENSGALG00000012484	RIF1	97	80.480	ENSGAGG00000012595	RIF1	94	80.480	Gopherus_agassizii
ENSGALG00000012484	RIF1	80	74.170	ENSGGOG00000040178	RIF1	74	74.170	Gorilla_gorilla
ENSGALG00000012484	RIF1	84	67.317	ENSHGLG00100009807	RIF1	76	66.829	Heterocephalus_glaber_male
ENSGALG00000012484	RIF1	65	50.583	ENSHCOG00000015943	rif1	53	50.134	Hippocampus_comes
ENSGALG00000012484	RIF1	70	53.394	ENSIPUG00000021703	rif1	58	53.105	Ictalurus_punctatus
ENSGALG00000012484	RIF1	93	55.797	ENSSTOG00000020712	RIF1	80	56.039	Ictidomys_tridecemlineatus
ENSGALG00000012484	RIF1	90	62.609	ENSJJAG00000023000	Rif1	81	62.319	Jaculus_jaculus
ENSGALG00000012484	RIF1	64	52.080	ENSLBEG00000023196	rif1	52	52.080	Labrus_bergylta
ENSGALG00000012484	RIF1	99	48.226	ENSLACG00000005425	RIF1	93	48.075	Latimeria_chalumnae
ENSGALG00000012484	RIF1	51	55.989	ENSLOCG00000002657	rif1	93	43.750	Lepisosteus_oculatus
ENSGALG00000012484	RIF1	91	65.559	ENSLAFG00000009796	RIF1	79	65.257	Loxodonta_africana
ENSGALG00000012484	RIF1	91	65.000	ENSMFAG00000032233	RIF1	79	65.000	Macaca_fascicularis
ENSGALG00000012484	RIF1	91	64.706	ENSMMUG00000008611	RIF1	79	64.706	Macaca_mulatta
ENSGALG00000012484	RIF1	91	65.000	ENSMNEG00000031616	RIF1	79	65.000	Macaca_nemestrina
ENSGALG00000012484	RIF1	91	64.706	ENSMLEG00000042945	RIF1	79	64.706	Mandrillus_leucophaeus
ENSGALG00000012484	RIF1	67	50.758	ENSMAMG00000001745	rif1	54	50.758	Mastacembelus_armatus
ENSGALG00000012484	RIF1	66	52.915	ENSMZEG00005020920	rif1	62	52.915	Maylandia_zebra
ENSGALG00000012484	RIF1	100	86.658	ENSMGAG00000012732	RIF1	95	86.658	Meleagris_gallopavo
ENSGALG00000012484	RIF1	93	89.163	ENSMAUG00000013158	Rif1	80	89.163	Mesocricetus_auratus
ENSGALG00000012484	RIF1	91	65.598	ENSMICG00000046127	RIF1	79	65.306	Microcebus_murinus
ENSGALG00000012484	RIF1	92	57.750	ENSMOCG00000009381	Rif1	83	57.750	Microtus_ochrogaster
ENSGALG00000012484	RIF1	65	49.730	ENSMMOG00000006519	rif1	57	49.642	Mola_mola
ENSGALG00000012484	RIF1	91	66.276	ENSMODG00000003703	RIF1	81	65.689	Monodelphis_domestica
ENSGALG00000012484	RIF1	59	54.545	ENSMALG00000016759	rif1	59	54.963	Monopterus_albus
ENSGALG00000012484	RIF1	92	57.289	MGP_CAROLIEiJ_G0023555	Rif1	80	57.289	Mus_caroli
ENSGALG00000012484	RIF1	85	58.015	ENSMUSG00000036202	Rif1	80	58.015	Mus_musculus
ENSGALG00000012484	RIF1	94	57.398	MGP_PahariEiJ_G0025006	Rif1	82	57.398	Mus_pahari
ENSGALG00000012484	RIF1	84	57.908	MGP_SPRETEiJ_G0024476	Rif1	73	57.908	Mus_spretus
ENSGALG00000012484	RIF1	91	65.294	ENSMPUG00000000371	RIF1	79	65.000	Mustela_putorius_furo
ENSGALG00000012484	RIF1	85	62.941	ENSMLUG00000003376	RIF1	82	62.647	Myotis_lucifugus
ENSGALG00000012484	RIF1	69	51.097	ENSNBRG00000014257	rif1	57	50.180	Neolamprologus_brichardi
ENSGALG00000012484	RIF1	91	63.816	ENSNLEG00000010955	RIF1	78	63.816	Nomascus_leucogenys
ENSGALG00000012484	RIF1	92	77.130	ENSMEUG00000007601	-	85	77.130	Notamacropus_eugenii
ENSGALG00000012484	RIF1	91	62.133	ENSODEG00000003950	RIF1	79	61.867	Octodon_degus
ENSGALG00000012484	RIF1	82	72.115	ENSOANG00000006078	-	74	72.115	Ornithorhynchus_anatinus
ENSGALG00000012484	RIF1	91	65.758	ENSOCUG00000017435	RIF1	79	65.455	Oryctolagus_cuniculus
ENSGALG00000012484	RIF1	65	47.619	ENSORLG00020001302	rif1	60	47.529	Oryzias_latipes_hni
ENSGALG00000012484	RIF1	65	48.198	ENSORLG00015000009	rif1	60	48.108	Oryzias_latipes_hsok
ENSGALG00000012484	RIF1	99	64.140	ENSOGAG00000006141	RIF1	78	63.848	Otolemur_garnettii
ENSGALG00000012484	RIF1	94	57.212	ENSOARG00000008930	RIF1	82	57.212	Ovis_aries
ENSGALG00000012484	RIF1	91	63.824	ENSPPAG00000023754	RIF1	79	63.824	Pan_paniscus
ENSGALG00000012484	RIF1	94	59.398	ENSPPRG00000003618	RIF1	78	64.217	Panthera_pardus
ENSGALG00000012484	RIF1	94	59.398	ENSPTIG00000020652	RIF1	81	59.296	Panthera_tigris_altaica
ENSGALG00000012484	RIF1	91	64.118	ENSPTRG00000012534	RIF1	79	64.118	Pan_troglodytes
ENSGALG00000012484	RIF1	91	65.000	ENSPANG00000008525	RIF1	79	65.000	Papio_anubis
ENSGALG00000012484	RIF1	63	50.958	ENSPMGG00000016141	rif1	65	50.575	Periophthalmus_magnuspinnatus
ENSGALG00000012484	RIF1	93	64.535	ENSPCIG00000009185	RIF1	85	61.290	Phascolarctos_cinereus
ENSGALG00000012484	RIF1	56	49.034	ENSPFOG00000017804	rif1	51	48.594	Poecilia_formosa
ENSGALG00000012484	RIF1	56	48.854	ENSPFOG00000000554	-	55	48.504	Poecilia_formosa
ENSGALG00000012484	RIF1	75	45.992	ENSPLAG00000017945	rif1	68	48.229	Poecilia_latipinna
ENSGALG00000012484	RIF1	57	62.766	ENSPREG00000018052	rif1	62	55.452	Poecilia_reticulata
ENSGALG00000012484	RIF1	91	64.412	ENSPPYG00000012846	RIF1	79	64.412	Pongo_abelii
ENSGALG00000012484	RIF1	68	68.421	ENSPCAG00000009032	RIF1	58	68.421	Procavia_capensis
ENSGALG00000012484	RIF1	91	66.181	ENSPCOG00000027888	RIF1	79	65.889	Propithecus_coquereli
ENSGALG00000012484	RIF1	82	78.274	ENSPVAG00000014276	RIF1	73	78.274	Pteropus_vampyrus
ENSGALG00000012484	RIF1	70	53.476	ENSPNAG00000016685	rif1	56	57.736	Pygocentrus_nattereri
ENSGALG00000012484	RIF1	93	57.398	ENSRNOG00000054901	Rif1	81	57.398	Rattus_norvegicus
ENSGALG00000012484	RIF1	91	65.294	ENSRBIG00000003704	RIF1	79	65.294	Rhinopithecus_bieti
ENSGALG00000012484	RIF1	91	65.294	ENSRROG00000028206	RIF1	79	65.294	Rhinopithecus_roxellana
ENSGALG00000012484	RIF1	91	65.294	ENSSBOG00000029530	RIF1	82	65.294	Saimiri_boliviensis_boliviensis
ENSGALG00000012484	RIF1	99	56.542	ENSSHAG00000018552	RIF1	91	60.158	Sarcophilus_harrisii
ENSGALG00000012484	RIF1	68	52.650	ENSSFOG00015021539	rif1	65	52.609	Scleropages_formosus
ENSGALG00000012484	RIF1	66	50.579	ENSSMAG00000011704	rif1	56	52.817	Scophthalmus_maximus
ENSGALG00000012484	RIF1	59	55.162	ENSSDUG00000015632	rif1	64	55.162	Seriola_dumerili
ENSGALG00000012484	RIF1	100	58.491	ENSSPUG00000003062	RIF1	95	58.670	Sphenodon_punctatus
ENSGALG00000012484	RIF1	50	64.793	ENSSPAG00000018359	rif1	63	64.793	Stegastes_partitus
ENSGALG00000012484	RIF1	89	66.667	ENSSSCG00000016395	RIF1	77	66.364	Sus_scrofa
ENSGALG00000012484	RIF1	76	64.151	ENSTBEG00000016082	RIF1	65	64.151	Tupaia_belangeri
ENSGALG00000012484	RIF1	99	53.796	ENSTTRG00000011190	RIF1	89	53.443	Tursiops_truncatus
ENSGALG00000012484	RIF1	87	65.192	ENSUAMG00000026385	RIF1	83	64.897	Ursus_americanus
ENSGALG00000012484	RIF1	91	65.192	ENSUMAG00000000337	RIF1	79	64.897	Ursus_maritimus
ENSGALG00000012484	RIF1	91	66.364	ENSVPAG00000002162	RIF1	78	66.061	Vicugna_pacos
ENSGALG00000012484	RIF1	91	66.471	ENSVVUG00000011293	RIF1	80	66.471	Vulpes_vulpes
ENSGALG00000012484	RIF1	99	49.615	ENSXETG00000004530	rif1	82	59.946	Xenopus_tropicalis
ENSGALG00000012484	RIF1	56	46.166	ENSXMAG00000000506	rif1	52	46.172	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	-	IEA	Process
GO:0000723	telomere maintenance	21873635.	IBA	Process
GO:0000781	chromosome, telomeric region	-	IEA	Component
GO:0000790	nuclear chromatin	-	IEA	Component
GO:0000793	condensed chromosome	-	IEA	Component
GO:0001939	female pronucleus	-	IEA	Component
GO:0001940	male pronucleus	-	IEA	Component
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005886	plasma membrane	-	IEA	Component
GO:0006281	DNA repair	-	IEA	Process
GO:0006348	chromatin silencing at telomere	-	IEA	Process
GO:0006974	cellular response to DNA damage stimulus	-	ISS	Process
GO:0007049	cell cycle	-	IEA	Process
GO:0016604	nuclear body	-	IEA	Component
GO:0019827	stem cell population maintenance	-	IEA	Process
GO:0031965	nuclear membrane	-	IEA	Component
GO:0035861	site of double-strand break	-	ISS	Component
GO:0043247	telomere maintenance in response to DNA damage	-	IEA	Process
GO:0045830	positive regulation of isotype switching	-	ISS	Process
GO:0051233	spindle midzone	-	IEA	Component
GO:0051574	positive regulation of histone H3-K9 methylation	-	IEA	Process
GO:1990830	cellular response to leukemia inhibitory factor	-	IEA	Process
GO:2000042	negative regulation of double-strand break repair via homologous recombination	-	ISS	Process
GO:2001034	positive regulation of double-strand break repair via nonhomologous end joining	23333306.	IMP	Process