EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSGALG00000014661 (Gene tree)
Gene ID: 427109
Gene Symbol: FAM172A
Alias: C5orf21
Full Name: Gallus gallus family with sequence similarity 172 member A (FAM172A)%2C mRNA.
Gene Type: protein_coding
Species: Gallus_gallus
Status: putative
Strand: Plus strand
Length: 263041 bases
Position: chrZ:58296404-58559444
Accession: NM_001006574
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGALP00000023585	Arb2	PF09757.9	5.6e-09	1	1
ENSGALP00000064299	Arb2	PF09757.9	5.6e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGALT00000087501	-	2004	-	ENSGALP00000064299	416 (aa)	-	A0A1L1RZJ0
ENSGALT00000023631	-	1985	-	ENSGALP00000023585	416 (aa)	-	Q5ZK44

Gene Model

Click here to download ENSGALG00000014661's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGALG00000014661's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGALG00000014661	FAM172A	97	89.109	ENSG00000113391	FAM172A	100	89.459	Homo_sapiens
ENSGALG00000014661	FAM172A	55	39.149	ENSAPLG00000011555	-	99	39.149	Anas_platyrhynchos
ENSGALG00000014661	FAM172A	100	93.990	ENSAPLG00000004055	FAM172A	100	93.990	Anas_platyrhynchos
ENSGALG00000014661	FAM172A	91	89.153	ENSACAG00000013305	FAM172A	98	89.153	Anolis_carolinensis
ENSGALG00000014661	FAM172A	89	81.351	ENSANAG00000035869	FAM172A	95	79.843	Aotus_nancymaae
ENSGALG00000014661	FAM172A	97	88.366	ENSBTAG00000050195	FAM172A	100	86.779	Bos_taurus
ENSGALG00000014661	FAM172A	97	88.861	ENSCJAG00000010444	FAM172A	100	87.260	Callithrix_jacchus
ENSGALG00000014661	FAM172A	86	89.665	ENSCAFG00000008064	FAM172A	99	87.838	Canis_familiaris
ENSGALG00000014661	FAM172A	97	88.614	ENSCAFG00020006210	FAM172A	100	87.019	Canis_lupus_dingo
ENSGALG00000014661	FAM172A	97	88.366	ENSCHIG00000008440	FAM172A	100	86.779	Capra_hircus
ENSGALG00000014661	FAM172A	64	88.722	ENSTSYG00000006286	FAM172A	85	88.722	Carlito_syrichta
ENSGALG00000014661	FAM172A	54	83.186	ENSCAPG00000014103	-	100	83.186	Cavia_aperea
ENSGALG00000014661	FAM172A	97	88.614	ENSCCAG00000023116	FAM172A	100	88.919	Cebus_capucinus
ENSGALG00000014661	FAM172A	100	79.327	ENSCLAG00000005472	FAM172A	100	88.608	Chinchilla_lanigera
ENSGALG00000014661	FAM172A	86	44.173	ENSCPBG00000004402	-	96	44.173	Chrysemys_picta_bellii
ENSGALG00000014661	FAM172A	65	88.519	ENSCANG00000040412	FAM172A	92	88.519	Colobus_angolensis_palliatus
ENSGALG00000014661	FAM172A	97	88.119	ENSDNOG00000004689	FAM172A	100	86.538	Dasypus_novemcinctus
ENSGALG00000014661	FAM172A	65	88.519	ENSDORG00000013558	Fam172a	88	88.519	Dipodomys_ordii
ENSGALG00000014661	FAM172A	85	39.130	ENSEBUG00000016097	-	70	39.130	Eptatretus_burgeri
ENSGALG00000014661	FAM172A	97	85.891	ENSECAG00000018274	FAM172A	100	84.375	Equus_caballus
ENSGALG00000014661	FAM172A	96	78.250	ENSEEUG00000002887	FAM172A	100	76.442	Erinaceus_europaeus
ENSGALG00000014661	FAM172A	99	66.587	ENSELUG00000017647	fam172a	99	66.587	Esox_lucius
ENSGALG00000014661	FAM172A	97	88.366	ENSFCAG00000025443	FAM172A	100	86.779	Felis_catus
ENSGALG00000014661	FAM172A	86	94.382	ENSFALG00000009072	FAM172A	99	92.141	Ficedula_albicollis
ENSGALG00000014661	FAM172A	81	44.083	ENSFALG00000006501	-	94	44.083	Ficedula_albicollis
ENSGALG00000014661	FAM172A	85	44.444	ENSGAGG00000022828	-	95	44.444	Gopherus_agassizii
ENSGALG00000014661	FAM172A	100	93.029	ENSGAGG00000003839	FAM172A	100	93.029	Gopherus_agassizii
ENSGALG00000014661	FAM172A	97	88.614	ENSGGOG00000010296	FAM172A	100	87.019	Gorilla_gorilla
ENSGALG00000014661	FAM172A	97	87.376	ENSHGLG00000011178	FAM172A	100	89.873	Heterocephalus_glaber_female
ENSGALG00000014661	FAM172A	86	88.796	ENSHGLG00100013340	FAM172A	100	89.873	Heterocephalus_glaber_male
ENSGALG00000014661	FAM172A	97	87.871	ENSSTOG00000009918	FAM172A	100	86.298	Ictidomys_tridecemlineatus
ENSGALG00000014661	FAM172A	88	48.229	ENSLACG00000001532	si:ch73-41e3.7	96	48.229	Latimeria_chalumnae
ENSGALG00000014661	FAM172A	98	76.829	ENSLOCG00000001629	fam172a	98	77.561	Lepisosteus_oculatus
ENSGALG00000014661	FAM172A	65	88.519	ENSMFAG00000001171	FAM172A	92	88.519	Macaca_fascicularis
ENSGALG00000014661	FAM172A	92	89.501	ENSMNEG00000039938	FAM172A	92	88.519	Macaca_nemestrina
ENSGALG00000014661	FAM172A	100	87.260	ENSMICG00000030403	FAM172A	100	87.260	Microcebus_murinus
ENSGALG00000014661	FAM172A	89	86.486	ENSMOCG00000003613	Fam172a	100	86.486	Microtus_ochrogaster
ENSGALG00000014661	FAM172A	98	88.177	ENSMODG00000020131	FAM172A	98	88.177	Monodelphis_domestica
ENSGALG00000014661	FAM172A	75	85.776	MGP_PahariEiJ_G0015818	Fam172a	100	85.776	Mus_pahari
ENSGALG00000014661	FAM172A	89	88.919	ENSNGAG00000019570	Fam172a	100	88.919	Nannospalax_galili
ENSGALG00000014661	FAM172A	65	88.519	ENSNLEG00000013903	FAM172A	89	88.519	Nomascus_leucogenys
ENSGALG00000014661	FAM172A	86	89.532	ENSOANG00000011068	FAM172A	97	89.532	Ornithorhynchus_anatinus
ENSGALG00000014661	FAM172A	94	88.804	ENSOCUG00000007299	FAM172A	96	87.160	Oryctolagus_cuniculus
ENSGALG00000014661	FAM172A	97	87.624	ENSOGAG00000015189	FAM172A	100	86.058	Otolemur_garnettii
ENSGALG00000014661	FAM172A	89	86.253	ENSOARG00000016711	FAM172A	87	84.595	Ovis_aries
ENSGALG00000014661	FAM172A	65	88.148	ENSPPAG00000030542	FAM172A	92	88.148	Pan_paniscus
ENSGALG00000014661	FAM172A	97	88.366	ENSPPRG00000006653	FAM172A	100	86.779	Panthera_pardus
ENSGALG00000014661	FAM172A	97	88.366	ENSPTIG00000012681	FAM172A	100	86.779	Panthera_tigris_altaica
ENSGALG00000014661	FAM172A	65	88.148	ENSPTRG00000017074	FAM172A	92	88.148	Pan_troglodytes
ENSGALG00000014661	FAM172A	65	88.519	ENSPANG00000011687	FAM172A	92	88.519	Papio_anubis
ENSGALG00000014661	FAM172A	95	74.177	ENSPKIG00000012314	fam172a	97	78.723	Paramormyrops_kingsleyae
ENSGALG00000014661	FAM172A	100	84.856	ENSPEMG00000009604	-	100	86.638	Peromyscus_maniculatus_bairdii
ENSGALG00000014661	FAM172A	100	86.779	ENSPCIG00000028612	FAM172A	100	86.779	Phascolarctos_cinereus
ENSGALG00000014661	FAM172A	55	89.912	ENSPCOG00000024072	FAM172A	92	89.912	Propithecus_coquereli
ENSGALG00000014661	FAM172A	65	85.130	ENSRNOG00000013844	Fam172a	99	85.130	Rattus_norvegicus
ENSGALG00000014661	FAM172A	65	88.519	ENSRROG00000023807	FAM172A	92	88.519	Rhinopithecus_roxellana
ENSGALG00000014661	FAM172A	97	88.614	ENSSBOG00000019860	FAM172A	100	87.019	Saimiri_boliviensis_boliviensis
ENSGALG00000014661	FAM172A	98	88.177	ENSSHAG00000013743	FAM172A	98	88.177	Sarcophilus_harrisii
ENSGALG00000014661	FAM172A	100	89.663	ENSSPUG00000008161	FAM172A	100	89.663	Sphenodon_punctatus
ENSGALG00000014661	FAM172A	100	87.019	ENSSSCG00000027608	FAM172A	100	88.919	Sus_scrofa
ENSGALG00000014661	FAM172A	91	93.684	ENSTGUG00000000715	FAM172A	100	93.684	Taeniopygia_guttata
ENSGALG00000014661	FAM172A	80	46.429	ENSTGUG00000013623	-	100	46.429	Taeniopygia_guttata
ENSGALG00000014661	FAM172A	79	55.988	ENSTNIG00000009902	fam172a	100	58.036	Tetraodon_nigroviridis
ENSGALG00000014661	FAM172A	100	83.413	ENSTTRG00000001521	FAM172A	100	83.413	Tursiops_truncatus
ENSGALG00000014661	FAM172A	97	88.861	ENSUMAG00000005442	FAM172A	100	87.260	Ursus_maritimus
ENSGALG00000014661	FAM172A	97	88.614	ENSVVUG00000022112	FAM172A	100	87.019	Vulpes_vulpes
ENSGALG00000014661	FAM172A	92	42.821	ENSXETG00000033027	-	100	42.821	Xenopus_tropicalis
ENSGALG00000014661	FAM172A	99	82.126	ENSXETG00000011592	fam172a	98	82.126	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	-	IEA	Process
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISS	Component
GO:0005737	cytoplasm	-	ISS	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0031048	chromatin silencing by small RNA	21873635.	IBA	Process
GO:0035197	siRNA binding	21873635.	IBA	Function