EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
Description
Ensembl ID
ENSGALG00000016424 (Gene tree)
Gene ID
421929
Gene Symbol
CPSF3
Alias
CPSF-73|CPSF73|YSH1
Full Name
cleavage and polyadenylation specific factor 3
Gene Type
protein_coding
Species
Gallus_gallus
Status
putative
Strand
Plus strand
Length
18633 bases
Position
chr3:96191000-96209632
Accession
421929
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSGALP00000052112CPSF73-100_CPF11718.81.4e-5311
ENSGALP00000026443CPSF73-100_CPF11718.81.7e-5311
ENSGALP00000052112Beta-CaspPF10996.83.9e-3411
ENSGALP00000026443Beta-CaspPF10996.84.6e-3411
ENSGALP00000026443Lactamase_BPF00753.271.1e-1811
ENSGALP00000052112Lactamase_BPF00753.271e-1311
ENSGALP00000052112RMMBLPF07521.121.4e-2111
ENSGALP00000026443RMMBLPF07521.121.6e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
(aa)
Gene Model
Click here to download ENSGALG00000016424's gene model file
Pathways
Pathway IDPathway NameSource
gga03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSGALG00000016424's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSGALG00000016424CPSF39995.154ENSG00000119203CPSF3100100.000Homo_sapiens
ENSGALG00000016424CPSF39985.486ENSAPOG00000022087cpsf39985.486Acanthochromis_polyacanthus
ENSGALG00000016424CPSF37396.245ENSAPOG00000012241CPSF39196.245Acanthochromis_polyacanthus
ENSGALG00000016424CPSF39995.007ENSAMEG00000008493CPSF39995.007Ailuropoda_melanoleuca
ENSGALG00000016424CPSF39982.222ENSACIG00000009846cpsf39982.222Amphilophus_citrinellus
ENSGALG00000016424CPSF39985.873ENSACIG00000023663CPSF39985.873Amphilophus_citrinellus
ENSGALG00000016424CPSF39985.341ENSAOCG00000022056cpsf39590.604Amphiprion_ocellaris
ENSGALG00000016424CPSF39986.919ENSAOCG00000010077CPSF39986.919Amphiprion_ocellaris
ENSGALG00000016424CPSF39986.919ENSAPEG00000021167CPSF39986.919Amphiprion_percula
ENSGALG00000016424CPSF39985.486ENSAPEG00000019526cpsf39986.626Amphiprion_percula
ENSGALG00000016424CPSF39982.703ENSATEG00000014525CPSF39982.703Anabas_testudineus
ENSGALG00000016424CPSF39985.153ENSATEG00000003959cpsf39985.153Anabas_testudineus
ENSGALG00000016424CPSF39997.323ENSAPLG00000006941CPSF39897.024Anas_platyrhynchos
ENSGALG00000016424CPSF39993.228ENSACAG00000001759CPSF39993.228Anolis_carolinensis
ENSGALG00000016424CPSF39988.693ENSANAG00000031254CPSF39989.072Aotus_nancymaae
ENSGALG00000016424CPSF39985.714ENSACLG00000018846CPSF39985.714Astatotilapia_calliptera
ENSGALG00000016424CPSF39984.724ENSACLG00000014484cpsf39985.457Astatotilapia_calliptera
ENSGALG00000016424CPSF39987.064ENSAMXG00000004786cpsf39987.064Astyanax_mexicanus
ENSGALG00000016424CPSF39995.154ENSBTAG00000019735CPSF39995.154Bos_taurus
ENSGALG00000016424CPSF39357.705WBGene00013460cpsf-39258.104Caenorhabditis_elegans
ENSGALG00000016424CPSF39994.860ENSCJAG00000006276CPSF39994.860Callithrix_jacchus
ENSGALG00000016424CPSF39995.007ENSCAFG00000003375CPSF39595.007Canis_familiaris
ENSGALG00000016424CPSF39096.316ENSCAFG00020026799CPSF39996.591Canis_lupus_dingo
ENSGALG00000016424CPSF39995.154ENSCHIG00000013973CPSF39995.154Capra_hircus
ENSGALG00000016424CPSF39995.154ENSTSYG00000002967CPSF39995.154Carlito_syrichta
ENSGALG00000016424CPSF39993.701ENSCAPG00000013851CPSF310094.003Cavia_aperea
ENSGALG00000016424CPSF39994.126ENSCPOG00000011299CPSF39994.126Cavia_porcellus
ENSGALG00000016424CPSF39995.007ENSCCAG00000036730CPSF39995.007Cebus_capucinus
ENSGALG00000016424CPSF39992.669ENSCATG00000014770CPSF39998.270Cercocebus_atys
ENSGALG00000016424CPSF39993.979ENSCLAG00000002727CPSF39993.979Chinchilla_lanigera
ENSGALG00000016424CPSF39987.225ENSCSAG00000007125CPSF39987.225Chlorocebus_sabaeus
ENSGALG00000016424CPSF386100.000ENSCHOG00000000180CPSF38568.772Choloepus_hoffmanni
ENSGALG00000016424CPSF39996.657ENSCPBG00000014074CPSF39996.657Chrysemys_picta_bellii
ENSGALG00000016424CPSF39966.928ENSCING00000007214-9867.204Ciona_intestinalis
ENSGALG00000016424CPSF39983.847ENSCANG00000034435CPSF39983.847Colobus_angolensis_palliatus
ENSGALG00000016424CPSF39994.420ENSCGRG00001013134Cpsf39994.420Cricetulus_griseus_chok1gshd
ENSGALG00000016424CPSF39994.420ENSCGRG00000018319Cpsf39994.420Cricetulus_griseus_crigri
ENSGALG00000016424CPSF39985.465ENSCSEG00000002021CPSF39985.471Cynoglossus_semilaevis
ENSGALG00000016424CPSF35071.250ENSCVAG00000022039-9471.250Cyprinodon_variegatus
ENSGALG00000016424CPSF39986.919ENSCVAG00000015067CPSF39986.919Cyprinodon_variegatus
ENSGALG00000016424CPSF39987.645ENSDARG00000027649cpsf39987.645Danio_rerio
ENSGALG00000016424CPSF39993.842ENSDNOG00000008940CPSF39593.842Dasypus_novemcinctus
ENSGALG00000016424CPSF39594.850ENSDORG00000014263Cpsf39995.216Dipodomys_ordii
ENSGALG00000016424CPSF39966.570FBgn0261065Cpsf739966.570Drosophila_melanogaster
ENSGALG00000016424CPSF39584.551ENSETEG00000003893CPSF39982.407Echinops_telfairi
ENSGALG00000016424CPSF39978.390ENSEBUG00000009018cpsf39978.531Eptatretus_burgeri
ENSGALG00000016424CPSF39995.007ENSEASG00005003970CPSF39995.007Equus_asinus_asinus
ENSGALG00000016424CPSF39995.007ENSECAG00000019911CPSF39797.333Equus_caballus
ENSGALG00000016424CPSF39979.442ENSEEUG00000015422CPSF39979.442Erinaceus_europaeus
ENSGALG00000016424CPSF39987.482ENSELUG00000013775cpsf39987.482Esox_lucius
ENSGALG00000016424CPSF39995.154ENSFCAG00000007852CPSF310094.900Felis_catus
ENSGALG00000016424CPSF39997.323ENSFALG00000006572CPSF310097.372Ficedula_albicollis
ENSGALG00000016424CPSF310093.082ENSFDAG00000006317CPSF39993.548Fukomys_damarensis
ENSGALG00000016424CPSF36467.726ENSFHEG00000012186CPSF39967.726Fundulus_heteroclitus
ENSGALG00000016424CPSF39984.035ENSFHEG00000014774cpsf39984.035Fundulus_heteroclitus
ENSGALG00000016424CPSF39985.776ENSGMOG00000003157cpsf39985.776Gadus_morhua
ENSGALG00000016424CPSF39987.627ENSGAFG00000008016CPSF39987.627Gambusia_affinis
ENSGALG00000016424CPSF39982.063ENSGAFG00000019449cpsf39982.063Gambusia_affinis
ENSGALG00000016424CPSF37394.861ENSGAGG00000025583CPSF39394.861Gopherus_agassizii
ENSGALG00000016424CPSF39994.803ENSGGOG00000001757CPSF310094.803Gorilla_gorilla
ENSGALG00000016424CPSF39985.341ENSHBUG00000001188cpsf39985.341Haplochromis_burtoni
ENSGALG00000016424CPSF36479.506ENSHBUG00000014332CPSF39979.506Haplochromis_burtoni
ENSGALG00000016424CPSF39993.539ENSHGLG00000000666CPSF39993.539Heterocephalus_glaber_female
ENSGALG00000016424CPSF39993.539ENSHGLG00100007765CPSF39993.539Heterocephalus_glaber_male
ENSGALG00000016424CPSF39985.320ENSHCOG00000015957CPSF39885.320Hippocampus_comes
ENSGALG00000016424CPSF39985.174ENSHCOG00000007251cpsf39985.174Hippocampus_comes
ENSGALG00000016424CPSF39985.901ENSIPUG00000023488cpsf39985.901Ictalurus_punctatus
ENSGALG00000016424CPSF39994.567ENSSTOG00000004476CPSF39994.567Ictidomys_tridecemlineatus
ENSGALG00000016424CPSF39993.997ENSJJAG00000023415Cpsf39993.997Jaculus_jaculus
ENSGALG00000016424CPSF39984.325ENSKMAG00000002806cpsf39984.325Kryptolebias_marmoratus
ENSGALG00000016424CPSF39987.064ENSKMAG00000007317CPSF39987.064Kryptolebias_marmoratus
ENSGALG00000016424CPSF39587.805ENSLBEG00000013492CPSF39987.805Labrus_bergylta
ENSGALG00000016424CPSF35978.400ENSLBEG00000015018-9978.400Labrus_bergylta
ENSGALG00000016424CPSF39979.330ENSLBEG00000020569cpsf39579.330Labrus_bergylta
ENSGALG00000016424CPSF39983.261ENSLACG00000008308CPSF39983.261Latimeria_chalumnae
ENSGALG00000016424CPSF39988.970ENSLOCG00000016823cpsf39988.970Lepisosteus_oculatus
ENSGALG00000016424CPSF39994.488ENSLAFG00000009467CPSF310093.529Loxodonta_africana
ENSGALG00000016424CPSF39995.007ENSMFAG00000001339CPSF39995.007Macaca_fascicularis
ENSGALG00000016424CPSF39994.646ENSMMUG00000018038CPSF310094.745Macaca_mulatta
ENSGALG00000016424CPSF39983.150ENSMNEG00000039447CPSF39982.232Macaca_nemestrina
ENSGALG00000016424CPSF39995.154ENSMLEG00000026825CPSF39995.154Mandrillus_leucophaeus
ENSGALG00000016424CPSF39984.177ENSMAMG00000008835CPSF39984.177Mastacembelus_armatus
ENSGALG00000016424CPSF39985.051ENSMAMG00000003076cpsf39985.051Mastacembelus_armatus
ENSGALG00000016424CPSF39987.500ENSMZEG00005006258CPSF39987.500Maylandia_zebra
ENSGALG00000016424CPSF39985.341ENSMZEG00005014358cpsf39985.341Maylandia_zebra
ENSGALG00000016424CPSF39999.843ENSMGAG00000013995CPSF310099.850Meleagris_gallopavo
ENSGALG00000016424CPSF35988.830ENSMAUG00000000166Cpsf310088.830Mesocricetus_auratus
ENSGALG00000016424CPSF39990.015ENSMICG00000002363CPSF310089.219Microcebus_murinus
ENSGALG00000016424CPSF39990.602ENSMOCG00000020067Cpsf39990.602Microtus_ochrogaster
ENSGALG00000016424CPSF37877.857ENSMMOG00000011923CPSF38477.857Mola_mola
ENSGALG00000016424CPSF39981.517ENSMMOG00000018212CPSF39881.860Mola_mola
ENSGALG00000016424CPSF39993.750ENSMODG00000014703CPSF39993.750Monodelphis_domestica
ENSGALG00000016424CPSF39982.969ENSMALG00000011474CPSF39982.969Monopterus_albus
ENSGALG00000016424CPSF39985.486ENSMALG00000016416cpsf39985.486Monopterus_albus
ENSGALG00000016424CPSF39994.273MGP_CAROLIEiJ_G0017640Cpsf39994.273Mus_caroli
ENSGALG00000016424CPSF39994.273ENSMUSG00000054309Cpsf396100.000Mus_musculus
ENSGALG00000016424CPSF39994.126MGP_PahariEiJ_G0029397Cpsf39994.126Mus_pahari
ENSGALG00000016424CPSF39994.273MGP_SPRETEiJ_G0018481Cpsf39994.273Mus_spretus
ENSGALG00000016424CPSF39994.714ENSMPUG00000013213CPSF39994.714Mustela_putorius_furo
ENSGALG00000016424CPSF39994.428ENSMLUG00000010636CPSF39994.428Myotis_lucifugus
ENSGALG00000016424CPSF39994.126ENSNGAG00000019836Cpsf39994.126Nannospalax_galili
ENSGALG00000016424CPSF39985.714ENSNBRG00000010525CPSF39985.714Neolamprologus_brichardi
ENSGALG00000016424CPSF39985.196ENSNBRG00000004770cpsf39985.196Neolamprologus_brichardi
ENSGALG00000016424CPSF39995.007ENSNLEG00000013359CPSF310094.745Nomascus_leucogenys
ENSGALG00000016424CPSF39963.622ENSMEUG00000013117-9962.996Notamacropus_eugenii
ENSGALG00000016424CPSF39985.756ENSOPRG00000008902CPSF39985.756Ochotona_princeps
ENSGALG00000016424CPSF39993.539ENSODEG00000003129CPSF39993.539Octodon_degus
ENSGALG00000016424CPSF39985.631ENSONIG00000018812cpsf39985.631Oreochromis_niloticus
ENSGALG00000016424CPSF38993.972ENSOANG00000008577CPSF310093.972Ornithorhynchus_anatinus
ENSGALG00000016424CPSF39994.860ENSOCUG00000003728CPSF39994.860Oryctolagus_cuniculus
ENSGALG00000016424CPSF39983.164ENSORLG00000018854cpsf39983.164Oryzias_latipes
ENSGALG00000016424CPSF39983.164ENSORLG00020013331cpsf39983.164Oryzias_latipes_hni
ENSGALG00000016424CPSF39983.164ENSORLG00015011017cpsf39983.164Oryzias_latipes_hsok
ENSGALG00000016424CPSF39983.309ENSOMEG00000010647cpsf39583.309Oryzias_melastigma
ENSGALG00000016424CPSF39984.875ENSOGAG00000001680CPSF39984.875Otolemur_garnettii
ENSGALG00000016424CPSF39995.154ENSOARG00000015073CPSF39995.154Ovis_aries
ENSGALG00000016424CPSF39995.154ENSPPAG00000042457CPSF39995.154Pan_paniscus
ENSGALG00000016424CPSF39994.860ENSPPRG00000016790CPSF310094.590Panthera_pardus
ENSGALG00000016424CPSF39994.488ENSPTIG00000003920CPSF310094.488Panthera_tigris_altaica
ENSGALG00000016424CPSF39995.154ENSPTRG00000011638CPSF39995.154Pan_troglodytes
ENSGALG00000016424CPSF39994.860ENSPANG00000016798CPSF39994.860Papio_anubis
ENSGALG00000016424CPSF39988.921ENSPKIG00000023646cpsf39988.921Paramormyrops_kingsleyae
ENSGALG00000016424CPSF39995.591ENSPSIG00000016144CPSF39994.868Pelodiscus_sinensis
ENSGALG00000016424CPSF36478.272ENSPMGG00000015311CPSF39978.272Periophthalmus_magnuspinnatus
ENSGALG00000016424CPSF38985.211ENSPMGG00000006141-9885.211Periophthalmus_magnuspinnatus
ENSGALG00000016424CPSF39994.126ENSPEMG00000017668Cpsf39994.126Peromyscus_maniculatus_bairdii
ENSGALG00000016424CPSF37890.257ENSPMAG00000004841cpsf310090.257Petromyzon_marinus
ENSGALG00000016424CPSF39994.961ENSPCIG00000009823CPSF39895.706Phascolarctos_cinereus
ENSGALG00000016424CPSF39987.336ENSPFOG00000010418-9987.336Poecilia_formosa
ENSGALG00000016424CPSF39984.470ENSPFOG00000015922cpsf39984.470Poecilia_formosa
ENSGALG00000016424CPSF36480.693ENSPLAG00000021300-9980.693Poecilia_latipinna
ENSGALG00000016424CPSF39984.470ENSPLAG00000000882cpsf39984.470Poecilia_latipinna
ENSGALG00000016424CPSF39984.615ENSPMEG00000018309cpsf39984.615Poecilia_mexicana
ENSGALG00000016424CPSF39982.222ENSPREG00000014875cpsf39982.222Poecilia_reticulata
ENSGALG00000016424CPSF39982.387ENSPREG00000004482CPSF39982.387Poecilia_reticulata
ENSGALG00000016424CPSF39990.602ENSPPYG00000012666CPSF39990.602Pongo_abelii
ENSGALG00000016424CPSF39562.126ENSPCAG00000015042CPSF39961.574Procavia_capensis
ENSGALG00000016424CPSF38988.095ENSPCOG00000023016CPSF39988.095Propithecus_coquereli
ENSGALG00000016424CPSF39994.471ENSPVAG00000005324CPSF39994.845Pteropus_vampyrus
ENSGALG00000016424CPSF38590.608ENSPNYG00000021047CPSF39190.608Pundamilia_nyererei
ENSGALG00000016424CPSF39985.341ENSPNYG00000004405cpsf39985.341Pundamilia_nyererei
ENSGALG00000016424CPSF39986.628ENSPNAG00000023060cpsf39986.628Pygocentrus_nattereri
ENSGALG00000016424CPSF39993.997ENSRNOG00000052418Cpsf39994.404Rattus_norvegicus
ENSGALG00000016424CPSF39990.394ENSRBIG00000041615CPSF39990.417Rhinopithecus_bieti
ENSGALG00000016424CPSF39995.154ENSRROG00000033792CPSF39995.154Rhinopithecus_roxellana
ENSGALG00000016424CPSF39340.172YLR277CYSH19440.984Saccharomyces_cerevisiae
ENSGALG00000016424CPSF39990.551ENSSBOG00000027263CPSF39791.004Saimiri_boliviensis_boliviensis
ENSGALG00000016424CPSF39995.448ENSSHAG00000007024CPSF39995.448Sarcophilus_harrisii
ENSGALG00000016424CPSF39989.067ENSSFOG00015002108cpsf39989.067Scleropages_formosus
ENSGALG00000016424CPSF39586.454ENSSMAG00000020534CPSF39786.454Scophthalmus_maximus
ENSGALG00000016424CPSF39986.919ENSSDUG00000018498CPSF39986.919Seriola_dumerili
ENSGALG00000016424CPSF39985.631ENSSDUG00000002828cpsf39785.631Seriola_dumerili
ENSGALG00000016424CPSF39986.919ENSSLDG00000005234CPSF39986.919Seriola_lalandi_dorsalis
ENSGALG00000016424CPSF39985.631ENSSLDG00000008469cpsf39687.081Seriola_lalandi_dorsalis
ENSGALG00000016424CPSF39978.267ENSSARG00000005186CPSF39978.267Sorex_araneus
ENSGALG00000016424CPSF39992.019ENSSPUG00000015525CPSF39792.399Sphenodon_punctatus
ENSGALG00000016424CPSF39986.483ENSSPAG00000002906CPSF39986.483Stegastes_partitus
ENSGALG00000016424CPSF39985.776ENSSPAG00000018579cpsf39985.776Stegastes_partitus
ENSGALG00000016424CPSF39994.795ENSSSCG00000020799CPSF39995.147Sus_scrofa
ENSGALG00000016424CPSF39997.368ENSTGUG00000013016CPSF310097.368Taeniopygia_guttata
ENSGALG00000016424CPSF36472.482ENSTRUG00000013905CPSF39972.482Takifugu_rubripes
ENSGALG00000016424CPSF39985.153ENSTRUG00000007030cpsf39885.153Takifugu_rubripes
ENSGALG00000016424CPSF38493.646ENSTBEG00000002707CPSF38493.646Tupaia_belangeri
ENSGALG00000016424CPSF38783.333ENSTTRG00000000861CPSF38783.333Tursiops_truncatus
ENSGALG00000016424CPSF39595.406ENSUAMG00000007535CPSF39495.406Ursus_americanus
ENSGALG00000016424CPSF39994.646ENSUMAG00000003676CPSF310094.745Ursus_maritimus
ENSGALG00000016424CPSF39593.189ENSVPAG00000008041CPSF310093.533Vicugna_pacos
ENSGALG00000016424CPSF39995.007ENSVVUG00000002194CPSF39995.007Vulpes_vulpes
ENSGALG00000016424CPSF39990.379ENSXETG00000008263cpsf39990.379Xenopus_tropicalis
ENSGALG00000016424CPSF39984.470ENSXCOG00000019695cpsf39984.470Xiphophorus_couchianus
ENSGALG00000016424CPSF35879.245ENSXCOG00000000957-8779.245Xiphophorus_couchianus
ENSGALG00000016424CPSF39987.482ENSXMAG00000027291CPSF39987.482Xiphophorus_maculatus
ENSGALG00000016424CPSF39984.615ENSXMAG00000009784cpsf310084.080Xiphophorus_maculatus

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