EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSGALG00000016854 (Gene tree)
Gene ID: 418764
Gene Symbol: LIG4
Alias: -
Full Name: Gallus gallus DNA ligase 4 (LIG4)%2C mRNA.
Gene Type: protein_coding
Species: Gallus_gallus
Status: putative
Strand: Plus strand
Length: 3632 bases
Position: chr1:141655789-141659420
Accession: NM_001030816
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGALP00000027179	RNA_ligase	PF09414.10	5.8e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGALT00000027230	-	3632	XM_015274177	ENSGALP00000027179	912 (aa)	XP_015129663	F1P275

Gene Model

Click here to download ENSGALG00000016854's gene model file

Pathways

Pathway ID	Pathway Name	Source
gga03450	Non-homologous end-joining	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSGALG00000016854's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGALG00000016854	LIG4	100	75.983	ENSG00000174405	LIG4	100	76.540	Homo_sapiens
ENSGALG00000016854	LIG4	99	66.923	ENSAPOG00000000866	lig4	99	66.923	Acanthochromis_polyacanthus
ENSGALG00000016854	LIG4	99	72.319	ENSAMEG00000019685	LIG4	99	72.319	Ailuropoda_melanoleuca
ENSGALG00000016854	LIG4	99	67.072	ENSACIG00000018309	lig4	99	67.072	Amphilophus_citrinellus
ENSGALG00000016854	LIG4	99	66.593	ENSAOCG00000011768	lig4	99	66.593	Amphiprion_ocellaris
ENSGALG00000016854	LIG4	99	66.703	ENSAPEG00000017815	lig4	99	66.703	Amphiprion_percula
ENSGALG00000016854	LIG4	100	65.570	ENSATEG00000005583	lig4	100	65.899	Anabas_testudineus
ENSGALG00000016854	LIG4	96	92.816	ENSAPLG00000001673	LIG4	99	92.816	Anas_platyrhynchos
ENSGALG00000016854	LIG4	99	78.855	ENSACAG00000014566	LIG4	100	78.855	Anolis_carolinensis
ENSGALG00000016854	LIG4	100	74.345	ENSANAG00000012446	LIG4	100	74.345	Aotus_nancymaae
ENSGALG00000016854	LIG4	99	66.081	ENSACLG00000027051	lig4	99	66.081	Astatotilapia_calliptera
ENSGALG00000016854	LIG4	99	65.816	ENSAMXG00000008192	lig4	93	65.816	Astyanax_mexicanus
ENSGALG00000016854	LIG4	100	73.799	ENSBTAG00000015868	LIG4	100	73.799	Bos_taurus
ENSGALG00000016854	LIG4	100	74.127	ENSCJAG00000014689	LIG4	100	74.127	Callithrix_jacchus
ENSGALG00000016854	LIG4	100	73.581	ENSCAFG00000006031	LIG4	100	73.581	Canis_familiaris
ENSGALG00000016854	LIG4	100	73.581	ENSCAFG00020021230	LIG4	100	73.581	Canis_lupus_dingo
ENSGALG00000016854	LIG4	100	73.581	ENSCHIG00000001019	LIG4	100	73.581	Capra_hircus
ENSGALG00000016854	LIG4	99	74.419	ENSCAPG00000006284	LIG4	99	74.419	Cavia_aperea
ENSGALG00000016854	LIG4	100	73.690	ENSCPOG00000014266	LIG4	100	73.690	Cavia_porcellus
ENSGALG00000016854	LIG4	100	74.454	ENSCCAG00000019971	LIG4	100	74.454	Cebus_capucinus
ENSGALG00000016854	LIG4	100	74.563	ENSCATG00000021075	LIG4	100	74.563	Cercocebus_atys
ENSGALG00000016854	LIG4	99	74.226	ENSCLAG00000003376	LIG4	99	74.226	Chinchilla_lanigera
ENSGALG00000016854	LIG4	100	75.000	ENSCSAG00000000211	LIG4	100	75.000	Chlorocebus_sabaeus
ENSGALG00000016854	LIG4	99	83.628	ENSCPBG00000023291	LIG4	100	83.388	Chrysemys_picta_bellii
ENSGALG00000016854	LIG4	70	45.639	ENSCING00000009536	-	97	45.639	Ciona_intestinalis
ENSGALG00000016854	LIG4	83	45.466	ENSCSAVG00000010336	-	98	45.466	Ciona_savignyi
ENSGALG00000016854	LIG4	100	74.563	ENSCANG00000005805	LIG4	100	74.563	Colobus_angolensis_palliatus
ENSGALG00000016854	LIG4	100	72.737	ENSCGRG00001012072	Lig4	100	72.737	Cricetulus_griseus_chok1gshd
ENSGALG00000016854	LIG4	100	72.737	ENSCGRG00000013417	Lig4	100	72.737	Cricetulus_griseus_crigri
ENSGALG00000016854	LIG4	96	66.781	ENSCSEG00000013905	lig4	95	66.781	Cynoglossus_semilaevis
ENSGALG00000016854	LIG4	100	65.899	ENSCVAG00000007896	lig4	100	65.899	Cyprinodon_variegatus
ENSGALG00000016854	LIG4	100	65.241	ENSDARG00000060620	lig4	100	65.241	Danio_rerio
ENSGALG00000016854	LIG4	100	74.700	ENSDNOG00000000513	LIG4	100	74.700	Dasypus_novemcinctus
ENSGALG00000016854	LIG4	99	74.558	ENSDORG00000027303	Lig4	99	74.558	Dipodomys_ordii
ENSGALG00000016854	LIG4	85	31.985	FBgn0030506	Lig4	87	31.985	Drosophila_melanogaster
ENSGALG00000016854	LIG4	98	72.173	ENSETEG00000015563	LIG4	100	72.395	Echinops_telfairi
ENSGALG00000016854	LIG4	99	42.600	ENSEBUG00000014243	lig4	99	42.408	Eptatretus_burgeri
ENSGALG00000016854	LIG4	100	74.127	ENSEASG00005022073	LIG4	100	74.127	Equus_asinus_asinus
ENSGALG00000016854	LIG4	100	73.690	ENSECAG00000003257	LIG4	100	73.690	Equus_caballus
ENSGALG00000016854	LIG4	99	66.411	ENSELUG00000006787	lig4	99	66.411	Esox_lucius
ENSGALG00000016854	LIG4	99	72.997	ENSFCAG00000031985	LIG4	100	72.997	Felis_catus
ENSGALG00000016854	LIG4	89	90.752	ENSFALG00000004214	LIG4	99	90.752	Ficedula_albicollis
ENSGALG00000016854	LIG4	100	73.690	ENSFDAG00000008973	LIG4	100	73.690	Fukomys_damarensis
ENSGALG00000016854	LIG4	100	65.536	ENSFHEG00000007398	lig4	91	65.536	Fundulus_heteroclitus
ENSGALG00000016854	LIG4	85	64.093	ENSGMOG00000012843	lig4	99	64.093	Gadus_morhua
ENSGALG00000016854	LIG4	98	66.444	ENSGAFG00000019779	lig4	95	65.827	Gambusia_affinis
ENSGALG00000016854	LIG4	99	64.128	ENSGACG00000014135	lig4	99	64.128	Gasterosteus_aculeatus
ENSGALG00000016854	LIG4	100	75.764	ENSGGOG00000027771	LIG4	100	75.764	Gorilla_gorilla
ENSGALG00000016854	LIG4	99	65.862	ENSHBUG00000006245	lig4	99	65.862	Haplochromis_burtoni
ENSGALG00000016854	LIG4	100	73.690	ENSHGLG00000000718	LIG4	100	73.690	Heterocephalus_glaber_female
ENSGALG00000016854	LIG4	100	73.690	ENSHGLG00100003265	LIG4	100	73.690	Heterocephalus_glaber_male
ENSGALG00000016854	LIG4	99	64.945	ENSHCOG00000012010	lig4	99	64.945	Hippocampus_comes
ENSGALG00000016854	LIG4	100	66.046	ENSIPUG00000013748	lig4	100	66.046	Ictalurus_punctatus
ENSGALG00000016854	LIG4	99	73.673	ENSSTOG00000024303	LIG4	99	73.673	Ictidomys_tridecemlineatus
ENSGALG00000016854	LIG4	100	72.380	ENSJJAG00000006750	Lig4	100	72.380	Jaculus_jaculus
ENSGALG00000016854	LIG4	99	65.184	ENSKMAG00000001149	lig4	99	65.184	Kryptolebias_marmoratus
ENSGALG00000016854	LIG4	91	66.104	ENSLBEG00000014578	lig4	100	66.104	Labrus_bergylta
ENSGALG00000016854	LIG4	100	74.261	ENSLACG00000003282	LIG4	100	74.261	Latimeria_chalumnae
ENSGALG00000016854	LIG4	100	70.164	ENSLOCG00000008901	lig4	99	70.164	Lepisosteus_oculatus
ENSGALG00000016854	LIG4	99	73.056	ENSLAFG00000031152	LIG4	99	73.056	Loxodonta_africana
ENSGALG00000016854	LIG4	100	75.000	ENSMFAG00000037235	LIG4	100	75.000	Macaca_fascicularis
ENSGALG00000016854	LIG4	100	74.782	ENSMMUG00000008874	LIG4	100	74.782	Macaca_mulatta
ENSGALG00000016854	LIG4	100	75.000	ENSMNEG00000023575	LIG4	100	75.000	Macaca_nemestrina
ENSGALG00000016854	LIG4	100	74.782	ENSMLEG00000026720	LIG4	100	74.782	Mandrillus_leucophaeus
ENSGALG00000016854	LIG4	99	66.593	ENSMAMG00000008472	lig4	99	66.593	Mastacembelus_armatus
ENSGALG00000016854	LIG4	99	66.081	ENSMZEG00005001855	lig4	99	66.081	Maylandia_zebra
ENSGALG00000016854	LIG4	100	97.149	ENSMGAG00000015532	LIG4	100	97.149	Meleagris_gallopavo
ENSGALG00000016854	LIG4	100	71.725	ENSMOCG00000019000	Lig4	100	71.725	Microtus_ochrogaster
ENSGALG00000016854	LIG4	99	65.628	ENSMMOG00000004390	lig4	99	65.628	Mola_mola
ENSGALG00000016854	LIG4	99	76.180	ENSMODG00000025064	LIG4	99	76.425	Monodelphis_domestica
ENSGALG00000016854	LIG4	99	65.967	ENSMALG00000008555	lig4	99	65.967	Monopterus_albus
ENSGALG00000016854	LIG4	100	73.253	MGP_CAROLIEiJ_G0030809	Lig4	100	73.253	Mus_caroli
ENSGALG00000016854	LIG4	100	72.926	ENSMUSG00000049717	Lig4	100	72.926	Mus_musculus
ENSGALG00000016854	LIG4	100	73.362	MGP_PahariEiJ_G0021270	Lig4	100	73.362	Mus_pahari
ENSGALG00000016854	LIG4	100	72.926	MGP_SPRETEiJ_G0031917	Lig4	100	72.926	Mus_spretus
ENSGALG00000016854	LIG4	99	73.326	ENSMPUG00000018675	LIG4	99	73.326	Mustela_putorius_furo
ENSGALG00000016854	LIG4	100	74.563	ENSMLUG00000001267	LIG4	100	74.563	Myotis_lucifugus
ENSGALG00000016854	LIG4	100	72.271	ENSNGAG00000013258	Lig4	100	72.271	Nannospalax_galili
ENSGALG00000016854	LIG4	99	65.862	ENSNBRG00000021252	lig4	99	65.862	Neolamprologus_brichardi
ENSGALG00000016854	LIG4	100	75.000	ENSNLEG00000007888	LIG4	100	75.000	Nomascus_leucogenys
ENSGALG00000016854	LIG4	100	72.707	ENSOPRG00000005765	LIG4	100	72.707	Ochotona_princeps
ENSGALG00000016854	LIG4	100	73.362	ENSODEG00000019683	LIG4	100	73.362	Octodon_degus
ENSGALG00000016854	LIG4	99	65.642	ENSONIG00000011969	lig4	99	65.642	Oreochromis_niloticus
ENSGALG00000016854	LIG4	100	72.817	ENSOCUG00000015734	LIG4	100	72.817	Oryctolagus_cuniculus
ENSGALG00000016854	LIG4	100	65.284	ENSORLG00000004041	lig4	100	65.284	Oryzias_latipes
ENSGALG00000016854	LIG4	100	65.830	ENSORLG00020019607	lig4	100	65.830	Oryzias_latipes_hni
ENSGALG00000016854	LIG4	100	65.502	ENSORLG00015017754	lig4	100	65.502	Oryzias_latipes_hsok
ENSGALG00000016854	LIG4	75	69.287	ENSOMEG00000003459	lig4	99	69.287	Oryzias_melastigma
ENSGALG00000016854	LIG4	100	73.690	ENSOGAG00000032120	LIG4	100	73.690	Otolemur_garnettii
ENSGALG00000016854	LIG4	82	77.733	ENSOARG00000005590	LIG4	98	77.733	Ovis_aries
ENSGALG00000016854	LIG4	100	75.437	ENSPPAG00000032998	LIG4	100	75.437	Pan_paniscus
ENSGALG00000016854	LIG4	99	73.216	ENSPPRG00000017804	LIG4	100	73.216	Panthera_pardus
ENSGALG00000016854	LIG4	99	73.326	ENSPTIG00000010051	LIG4	100	73.326	Panthera_tigris_altaica
ENSGALG00000016854	LIG4	100	75.546	ENSPTRG00000006025	LIG4	100	75.546	Pan_troglodytes
ENSGALG00000016854	LIG4	100	74.672	ENSPANG00000007562	LIG4	100	74.672	Papio_anubis
ENSGALG00000016854	LIG4	100	67.105	ENSPKIG00000011645	lig4	99	67.105	Paramormyrops_kingsleyae
ENSGALG00000016854	LIG4	100	83.133	ENSPSIG00000001504	LIG4	100	83.133	Pelodiscus_sinensis
ENSGALG00000016854	LIG4	98	64.214	ENSPMGG00000013486	lig4	99	63.706	Periophthalmus_magnuspinnatus
ENSGALG00000016854	LIG4	100	72.846	ENSPEMG00000000076	Lig4	100	72.846	Peromyscus_maniculatus_bairdii
ENSGALG00000016854	LIG4	99	76.754	ENSPCIG00000021882	LIG4	99	76.754	Phascolarctos_cinereus
ENSGALG00000016854	LIG4	98	66.518	ENSPFOG00000000797	lig4	99	65.899	Poecilia_formosa
ENSGALG00000016854	LIG4	98	66.518	ENSPLAG00000001196	lig4	99	65.899	Poecilia_latipinna
ENSGALG00000016854	LIG4	98	66.629	ENSPMEG00000021353	lig4	99	66.009	Poecilia_mexicana
ENSGALG00000016854	LIG4	98	66.518	ENSPREG00000007323	lig4	99	65.899	Poecilia_reticulata
ENSGALG00000016854	LIG4	100	74.891	ENSPPYG00000005540	LIG4	100	74.891	Pongo_abelii
ENSGALG00000016854	LIG4	100	73.581	ENSPVAG00000016403	LIG4	100	73.581	Pteropus_vampyrus
ENSGALG00000016854	LIG4	99	65.862	ENSPNYG00000009660	lig4	99	65.862	Pundamilia_nyererei
ENSGALG00000016854	LIG4	99	66.296	ENSPNAG00000028069	LIG4	99	66.296	Pygocentrus_nattereri
ENSGALG00000016854	LIG4	99	66.296	ENSPNAG00000028056	lig4	99	66.296	Pygocentrus_nattereri
ENSGALG00000016854	LIG4	100	72.052	ENSRNOG00000014605	Lig4	100	72.052	Rattus_norvegicus
ENSGALG00000016854	LIG4	100	73.472	ENSRBIG00000039962	LIG4	100	73.472	Rhinopithecus_bieti
ENSGALG00000016854	LIG4	100	74.454	ENSRROG00000006040	LIG4	100	74.454	Rhinopithecus_roxellana
ENSGALG00000016854	LIG4	100	74.454	ENSSBOG00000019029	LIG4	100	74.454	Saimiri_boliviensis_boliviensis
ENSGALG00000016854	LIG4	99	73.436	ENSSHAG00000009525	LIG4	99	73.904	Sarcophilus_harrisii
ENSGALG00000016854	LIG4	100	65.717	ENSSFOG00015012835	lig4	100	65.717	Scleropages_formosus
ENSGALG00000016854	LIG4	100	62.719	ENSSMAG00000011267	lig4	100	62.719	Scophthalmus_maximus
ENSGALG00000016854	LIG4	100	65.758	ENSSDUG00000010343	lig4	100	65.758	Seriola_dumerili
ENSGALG00000016854	LIG4	100	64.301	ENSSLDG00000003239	lig4	100	64.340	Seriola_lalandi_dorsalis
ENSGALG00000016854	LIG4	100	70.947	ENSSARG00000006573	LIG4	100	70.947	Sorex_araneus
ENSGALG00000016854	LIG4	92	81.688	ENSSPUG00000002444	LIG4	100	81.688	Sphenodon_punctatus
ENSGALG00000016854	LIG4	99	66.373	ENSSPAG00000001609	lig4	99	66.373	Stegastes_partitus
ENSGALG00000016854	LIG4	99	75.000	ENSSSCG00000009540	LIG4	99	75.000	Sus_scrofa
ENSGALG00000016854	LIG4	99	89.526	ENSTGUG00000010795	LIG4	100	89.526	Taeniopygia_guttata
ENSGALG00000016854	LIG4	100	65.899	ENSTRUG00000009984	lig4	100	65.899	Takifugu_rubripes
ENSGALG00000016854	LIG4	99	65.342	ENSTNIG00000010348	lig4	100	65.241	Tetraodon_nigroviridis
ENSGALG00000016854	LIG4	100	74.454	ENSTBEG00000017741	LIG4	100	74.454	Tupaia_belangeri
ENSGALG00000016854	LIG4	100	73.253	ENSTTRG00000012660	LIG4	100	73.253	Tursiops_truncatus
ENSGALG00000016854	LIG4	99	72.887	ENSUAMG00000003773	LIG4	99	72.887	Ursus_americanus
ENSGALG00000016854	LIG4	100	72.727	ENSXETG00000002654	lig4	100	72.727	Xenopus_tropicalis
ENSGALG00000016854	LIG4	98	66.295	ENSXCOG00000017401	lig4	99	65.752	Xiphophorus_couchianus
ENSGALG00000016854	LIG4	98	66.444	ENSXMAG00000015142	lig4	99	65.899	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003677	DNA binding	-	IEA	Function
GO:0003910	DNA ligase (ATP) activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005654	nucleoplasm	-	TAS	Component
GO:0005958	DNA-dependent protein kinase-DNA ligase 4 complex	21873635.	IBA	Component
GO:0006260	DNA replication	-	IEA	Process
GO:0006297	nucleotide-excision repair, DNA gap filling	21873635.	IBA	Process
GO:0006303	double-strand break repair via nonhomologous end joining	21873635.	IBA	Process
GO:0006303	double-strand break repair via nonhomologous end joining	-	TAS	Process
GO:0007049	cell cycle	-	IEA	Process
GO:0032807	DNA ligase IV complex	21873635.	IBA	Component
GO:0033152	immunoglobulin V(D)J recombination	21873635.	IBA	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0051103	DNA ligation involved in DNA repair	-	IEA	Process
GO:0051301	cell division	-	IEA	Process
GO:0070419	nonhomologous end joining complex	-	ISS	Component
GO:0071897	DNA biosynthetic process	-	IEA	Process