EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSGALG00000017142 (Gene tree)
Gene ID: 418955
Gene Symbol: PSPC1
Alias: -
Full Name: Gallus gallus paraspeckle component 1 (PSPC1)%2C mRNA.
Gene Type: protein_coding
Species: Gallus_gallus
Status: putative
Strand: Plus strand
Length: 38887 bases
Position: chr1:180486091-180524977
Accession: NM_001030831
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGALP00000035658	RRM_1	PF00076.22	1.3e-32	1	2
ENSGALP00000035658	RRM_1	PF00076.22	1.3e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGALT00000036438	-	1979	-	ENSGALP00000035658	523 (aa)	-	Q5ZK88

Gene Model

Click here to download ENSGALG00000017142's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGALG00000017142's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGALG00000017142	PSPC1	89	94.647	ENSG00000121390	PSPC1	99	87.311	Homo_sapiens
ENSGALG00000017142	PSPC1	90	68.916	ENSAPOG00000015946	pspc1	88	69.053	Acanthochromis_polyacanthus
ENSGALG00000017142	PSPC1	99	88.825	ENSAMEG00000017420	PSPC1	88	95.238	Ailuropoda_melanoleuca
ENSGALG00000017142	PSPC1	88	61.229	ENSACIG00000018695	pspc1	87	58.898	Amphilophus_citrinellus
ENSGALG00000017142	PSPC1	90	68.033	ENSAOCG00000005279	pspc1	88	68.067	Amphiprion_ocellaris
ENSGALG00000017142	PSPC1	90	68.685	ENSAPEG00000015927	pspc1	88	68.776	Amphiprion_percula
ENSGALG00000017142	PSPC1	88	56.992	ENSATEG00000004878	pspc1	87	57.415	Anabas_testudineus
ENSGALG00000017142	PSPC1	77	98.762	ENSAPLG00000006246	PSPC1	100	98.762	Anas_platyrhynchos
ENSGALG00000017142	PSPC1	89	60.515	ENSAPLG00000003643	SFPQ	83	59.570	Anas_platyrhynchos
ENSGALG00000017142	PSPC1	89	55.579	ENSACAG00000013307	-	67	56.344	Anolis_carolinensis
ENSGALG00000017142	PSPC1	100	89.831	ENSACAG00000002093	PSPC1	100	88.037	Anolis_carolinensis
ENSGALG00000017142	PSPC1	99	88.439	ENSANAG00000000059	PSPC1	99	87.287	Aotus_nancymaae
ENSGALG00000017142	PSPC1	99	54.597	ENSACLG00000027220	pspc1	87	58.887	Astatotilapia_calliptera
ENSGALG00000017142	PSPC1	99	67.161	ENSAMXG00000036881	pspc1	99	66.296	Astyanax_mexicanus
ENSGALG00000017142	PSPC1	99	87.476	ENSBTAG00000003934	PSPC1	89	94.805	Bos_taurus
ENSGALG00000017142	PSPC1	99	88.632	ENSCJAG00000004554	PSPC1	99	87.476	Callithrix_jacchus
ENSGALG00000017142	PSPC1	99	87.838	ENSCAFG00020002009	PSPC1	99	87.666	Canis_lupus_dingo
ENSGALG00000017142	PSPC1	99	87.476	ENSCHIG00000016708	PSPC1	89	94.805	Capra_hircus
ENSGALG00000017142	PSPC1	80	83.924	ENSTSYG00000032882	PSPC1	93	81.991	Carlito_syrichta
ENSGALG00000017142	PSPC1	99	86.907	ENSCPOG00000000395	PSPC1	99	86.907	Cavia_porcellus
ENSGALG00000017142	PSPC1	99	88.439	ENSCCAG00000033498	PSPC1	99	87.287	Cebus_capucinus
ENSGALG00000017142	PSPC1	89	94.647	ENSCATG00000036434	PSPC1	90	97.231	Cercocebus_atys
ENSGALG00000017142	PSPC1	89	84.086	ENSCLAG00000005241	PSPC1	99	84.267	Chinchilla_lanigera
ENSGALG00000017142	PSPC1	99	81.801	ENSCHOG00000008913	PSPC1	88	90.043	Choloepus_hoffmanni
ENSGALG00000017142	PSPC1	100	96.947	ENSCPBG00000020859	PSPC1	100	96.947	Chrysemys_picta_bellii
ENSGALG00000017142	PSPC1	59	60.129	ENSCSAVG00000003533	-	59	58.599	Ciona_savignyi
ENSGALG00000017142	PSPC1	78	80.788	ENSCANG00000018948	PSPC1	87	96.958	Colobus_angolensis_palliatus
ENSGALG00000017142	PSPC1	99	87.194	ENSCGRG00001018368	Pspc1	99	86.957	Cricetulus_griseus_chok1gshd
ENSGALG00000017142	PSPC1	99	87.194	ENSCGRG00000011724	Pspc1	99	86.957	Cricetulus_griseus_crigri
ENSGALG00000017142	PSPC1	99	59.150	ENSCVAG00000007679	-	86	64.103	Cyprinodon_variegatus
ENSGALG00000017142	PSPC1	99	65.977	ENSDARG00000006621	pspc1	100	69.398	Danio_rerio
ENSGALG00000017142	PSPC1	89	94.433	ENSDNOG00000011078	PSPC1	88	95.022	Dasypus_novemcinctus
ENSGALG00000017142	PSPC1	99	84.906	ENSDORG00000016050	Pspc1	99	84.470	Dipodomys_ordii
ENSGALG00000017142	PSPC1	55	98.020	ENSETEG00000000502	-	72	98.020	Echinops_telfairi
ENSGALG00000017142	PSPC1	60	45.994	ENSEBUG00000010133	pspc1	72	51.273	Eptatretus_burgeri
ENSGALG00000017142	PSPC1	90	57.000	ENSEBUG00000003964	-	62	71.014	Eptatretus_burgeri
ENSGALG00000017142	PSPC1	99	88.023	ENSEASG00005000119	PSPC1	99	88.213	Equus_asinus_asinus
ENSGALG00000017142	PSPC1	99	88.023	ENSECAG00000017286	PSPC1	99	88.213	Equus_caballus
ENSGALG00000017142	PSPC1	87	75.701	ENSEEUG00000011288	-	72	81.967	Erinaceus_europaeus
ENSGALG00000017142	PSPC1	99	66.667	ENSELUG00000003746	pspc1	94	71.684	Esox_lucius
ENSGALG00000017142	PSPC1	99	87.689	ENSFCAG00000027841	PSPC1	99	87.643	Felis_catus
ENSGALG00000017142	PSPC1	100	97.538	ENSFALG00000008750	PSPC1	100	97.538	Ficedula_albicollis
ENSGALG00000017142	PSPC1	99	88.224	ENSFDAG00000002617	PSPC1	99	88.031	Fukomys_damarensis
ENSGALG00000017142	PSPC1	88	66.595	ENSGMOG00000015074	pspc1	86	65.665	Gadus_morhua
ENSGALG00000017142	PSPC1	64	75.516	ENSGAFG00000006327	pspc1	67	77.231	Gambusia_affinis
ENSGALG00000017142	PSPC1	88	64.946	ENSGACG00000014901	pspc1	92	72.561	Gasterosteus_aculeatus
ENSGALG00000017142	PSPC1	100	96.756	ENSGAGG00000019164	PSPC1	100	96.756	Gopherus_agassizii
ENSGALG00000017142	PSPC1	91	58.212	ENSGAGG00000017325	-	67	58.333	Gopherus_agassizii
ENSGALG00000017142	PSPC1	89	94.433	ENSGGOG00000003414	PSPC1	99	87.121	Gorilla_gorilla
ENSGALG00000017142	PSPC1	88	68.951	ENSHBUG00000001139	pspc1	87	68.522	Haplochromis_burtoni
ENSGALG00000017142	PSPC1	99	86.907	ENSHGLG00000018811	PSPC1	99	86.907	Heterocephalus_glaber_female
ENSGALG00000017142	PSPC1	66	88.372	ENSHGLG00100007962	PSPC1	88	98.606	Heterocephalus_glaber_male
ENSGALG00000017142	PSPC1	72	70.573	ENSHCOG00000013251	pspc1	84	68.947	Hippocampus_comes
ENSGALG00000017142	PSPC1	99	68.224	ENSIPUG00000013192	pspc1	99	67.347	Ictalurus_punctatus
ENSGALG00000017142	PSPC1	99	87.170	ENSSTOG00000026833	PSPC1	99	87.925	Ictidomys_tridecemlineatus
ENSGALG00000017142	PSPC1	99	87.283	ENSJJAG00000018334	Pspc1	99	87.066	Jaculus_jaculus
ENSGALG00000017142	PSPC1	88	53.319	ENSKMAG00000013525	-	84	54.936	Kryptolebias_marmoratus
ENSGALG00000017142	PSPC1	90	64.646	ENSLBEG00000004474	pspc1	75	71.154	Labrus_bergylta
ENSGALG00000017142	PSPC1	99	80.608	ENSLACG00000010762	PSPC1	99	80.725	Latimeria_chalumnae
ENSGALG00000017142	PSPC1	99	78.695	ENSLOCG00000010832	pspc1	99	78.311	Lepisosteus_oculatus
ENSGALG00000017142	PSPC1	99	88.054	ENSLAFG00000010968	PSPC1	88	95.238	Loxodonta_africana
ENSGALG00000017142	PSPC1	89	94.647	ENSMFAG00000032728	PSPC1	91	97.239	Macaca_fascicularis
ENSGALG00000017142	PSPC1	89	94.647	ENSMMUG00000020262	PSPC1	88	97.231	Macaca_mulatta
ENSGALG00000017142	PSPC1	89	94.647	ENSMNEG00000027401	PSPC1	88	95.238	Macaca_nemestrina
ENSGALG00000017142	PSPC1	76	94.750	ENSMLEG00000039043	PSPC1	94	94.750	Mandrillus_leucophaeus
ENSGALG00000017142	PSPC1	90	66.194	ENSMAMG00000004333	pspc1	79	70.670	Mastacembelus_armatus
ENSGALG00000017142	PSPC1	99	54.597	ENSMZEG00005005726	pspc1	87	58.887	Maylandia_zebra
ENSGALG00000017142	PSPC1	78	98.768	ENSMGAG00000015134	PSPC1	100	98.768	Meleagris_gallopavo
ENSGALG00000017142	PSPC1	87	82.128	ENSMAUG00000021067	Pspc1	98	81.838	Mesocricetus_auratus
ENSGALG00000017142	PSPC1	91	93.277	ENSMICG00000013970	PSPC1	99	87.452	Microcebus_murinus
ENSGALG00000017142	PSPC1	99	87.908	ENSMOCG00000006060	Pspc1	99	87.287	Microtus_ochrogaster
ENSGALG00000017142	PSPC1	90	44.600	ENSMMOG00000004352	pspc1	58	54.294	Mola_mola
ENSGALG00000017142	PSPC1	82	93.721	ENSMODG00000008029	PSPC1	78	85.918	Monodelphis_domestica
ENSGALG00000017142	PSPC1	88	67.880	ENSMALG00000008914	pspc1	87	67.164	Monopterus_albus
ENSGALG00000017142	PSPC1	99	87.716	MGP_CAROLIEiJ_G0019341	Pspc1	99	87.097	Mus_caroli
ENSGALG00000017142	PSPC1	99	87.908	ENSMUSG00000021938	Pspc1	99	87.287	Mus_musculus
ENSGALG00000017142	PSPC1	99	87.716	MGP_PahariEiJ_G0030359	Pspc1	99	87.097	Mus_pahari
ENSGALG00000017142	PSPC1	99	87.006	MGP_SPRETEiJ_G0020232	Pspc1	99	87.524	Mus_spretus
ENSGALG00000017142	PSPC1	99	87.500	ENSMPUG00000013347	PSPC1	99	87.452	Mustela_putorius_furo
ENSGALG00000017142	PSPC1	99	87.006	ENSMLUG00000017663	PSPC1	99	87.006	Myotis_lucifugus
ENSGALG00000017142	PSPC1	99	87.645	ENSNGAG00000011271	Pspc1	99	87.097	Nannospalax_galili
ENSGALG00000017142	PSPC1	62	69.136	ENSNBRG00000014059	pspc1	76	70.062	Neolamprologus_brichardi
ENSGALG00000017142	PSPC1	89	94.647	ENSNLEG00000001294	PSPC1	94	91.650	Nomascus_leucogenys
ENSGALG00000017142	PSPC1	74	96.500	ENSMEUG00000000476	PSPC1	72	97.938	Notamacropus_eugenii
ENSGALG00000017142	PSPC1	100	76.735	ENSODEG00000019012	-	100	77.593	Octodon_degus
ENSGALG00000017142	PSPC1	99	76.091	ENSODEG00000007817	-	99	76.000	Octodon_degus
ENSGALG00000017142	PSPC1	88	69.658	ENSONIG00000012010	pspc1	87	67.505	Oreochromis_niloticus
ENSGALG00000017142	PSPC1	76	94.000	ENSOANG00000009017	-	100	94.000	Ornithorhynchus_anatinus
ENSGALG00000017142	PSPC1	89	68.387	ENSOANG00000011381	-	92	67.457	Ornithorhynchus_anatinus
ENSGALG00000017142	PSPC1	89	94.647	ENSOCUG00000006153	PSPC1	99	87.500	Oryctolagus_cuniculus
ENSGALG00000017142	PSPC1	88	69.379	ENSORLG00000004232	-	87	65.966	Oryzias_latipes
ENSGALG00000017142	PSPC1	90	68.842	ENSORLG00020000578	PSPC1	87	66.176	Oryzias_latipes_hni
ENSGALG00000017142	PSPC1	90	68.842	ENSORLG00015017480	pspc1	87	65.966	Oryzias_latipes_hsok
ENSGALG00000017142	PSPC1	99	86.355	ENSOGAG00000012643	PSPC1	99	87.500	Otolemur_garnettii
ENSGALG00000017142	PSPC1	88	94.348	ENSOARG00000014163	PSPC1	95	91.957	Ovis_aries
ENSGALG00000017142	PSPC1	90	87.660	ENSPPAG00000009836	PSPC1	93	96.960	Pan_paniscus
ENSGALG00000017142	PSPC1	99	87.689	ENSPPRG00000008833	PSPC1	99	87.643	Panthera_pardus
ENSGALG00000017142	PSPC1	76	94.750	ENSPTIG00000016917	PSPC1	84	94.750	Panthera_tigris_altaica
ENSGALG00000017142	PSPC1	82	95.116	ENSPTRG00000005677	PSPC1	98	87.169	Pan_troglodytes
ENSGALG00000017142	PSPC1	89	94.647	ENSPANG00000001992	PSPC1	89	97.239	Papio_anubis
ENSGALG00000017142	PSPC1	93	68.238	ENSPKIG00000003578	pspc1	99	68.352	Paramormyrops_kingsleyae
ENSGALG00000017142	PSPC1	100	94.118	ENSPSIG00000005168	PSPC1	100	93.738	Pelodiscus_sinensis
ENSGALG00000017142	PSPC1	59	70.550	ENSPMGG00000015135	pspc1	79	73.519	Periophthalmus_magnuspinnatus
ENSGALG00000017142	PSPC1	99	88.100	ENSPEMG00000015214	Pspc1	99	87.072	Peromyscus_maniculatus_bairdii
ENSGALG00000017142	PSPC1	54	45.361	ENSPMAG00000004618	pspc1	79	48.077	Petromyzon_marinus
ENSGALG00000017142	PSPC1	89	93.590	ENSPCIG00000017680	PSPC1	99	86.364	Phascolarctos_cinereus
ENSGALG00000017142	PSPC1	90	67.149	ENSPFOG00000003362	pspc1	88	67.234	Poecilia_formosa
ENSGALG00000017142	PSPC1	69	67.033	ENSPLAG00000004407	-	50	68.091	Poecilia_latipinna
ENSGALG00000017142	PSPC1	90	67.149	ENSPLAG00000011540	pspc1	87	67.234	Poecilia_latipinna
ENSGALG00000017142	PSPC1	90	66.736	ENSPMEG00000008322	pspc1	87	66.809	Poecilia_mexicana
ENSGALG00000017142	PSPC1	67	67.416	ENSPMEG00000001025	-	50	68.091	Poecilia_mexicana
ENSGALG00000017142	PSPC1	90	66.736	ENSPREG00000007786	pspc1	87	66.809	Poecilia_reticulata
ENSGALG00000017142	PSPC1	99	87.452	ENSPPYG00000005186	PSPC1	99	87.262	Pongo_abelii
ENSGALG00000017142	PSPC1	66	96.341	ENSPCAG00000008314	-	55	98.387	Procavia_capensis
ENSGALG00000017142	PSPC1	99	81.869	ENSPCOG00000014364	PSPC1	99	82.955	Propithecus_coquereli
ENSGALG00000017142	PSPC1	99	86.486	ENSPVAG00000005036	PSPC1	99	85.714	Pteropus_vampyrus
ENSGALG00000017142	PSPC1	99	50.281	ENSPNYG00000008893	pspc1	87	58.887	Pundamilia_nyererei
ENSGALG00000017142	PSPC1	99	67.420	ENSPNAG00000016511	pspc1	99	67.537	Pygocentrus_nattereri
ENSGALG00000017142	PSPC1	99	86.441	ENSRNOG00000020782	Pspc1	99	86.907	Rattus_norvegicus
ENSGALG00000017142	PSPC1	89	94.647	ENSRBIG00000036057	PSPC1	95	95.238	Rhinopithecus_bieti
ENSGALG00000017142	PSPC1	89	94.647	ENSRROG00000036334	PSPC1	88	95.238	Rhinopithecus_roxellana
ENSGALG00000017142	PSPC1	79	84.058	ENSSBOG00000028172	PSPC1	90	92.419	Saimiri_boliviensis_boliviensis
ENSGALG00000017142	PSPC1	89	87.872	ENSSHAG00000004696	PSPC1	99	81.321	Sarcophilus_harrisii
ENSGALG00000017142	PSPC1	81	77.934	ENSSFOG00015001395	pspc1	99	73.795	Scleropages_formosus
ENSGALG00000017142	PSPC1	88	66.385	ENSSMAG00000001761	pspc1	82	75.758	Scophthalmus_maximus
ENSGALG00000017142	PSPC1	88	67.814	ENSSDUG00000010651	pspc1	75	74.408	Seriola_dumerili
ENSGALG00000017142	PSPC1	88	63.283	ENSSLDG00000004284	pspc1	86	60.341	Seriola_lalandi_dorsalis
ENSGALG00000017142	PSPC1	99	82.046	ENSSARG00000000888	PSPC1	99	81.749	Sorex_araneus
ENSGALG00000017142	PSPC1	100	82.095	ENSSPUG00000008550	PSPC1	100	81.333	Sphenodon_punctatus
ENSGALG00000017142	PSPC1	89	54.352	ENSSPUG00000001136	-	52	61.756	Sphenodon_punctatus
ENSGALG00000017142	PSPC1	90	67.002	ENSSPAG00000001921	pspc1	75	73.786	Stegastes_partitus
ENSGALG00000017142	PSPC1	99	87.500	ENSSSCG00000009569	PSPC1	99	87.311	Sus_scrofa
ENSGALG00000017142	PSPC1	89	99.572	ENSTGUG00000011295	PSPC1	100	99.572	Taeniopygia_guttata
ENSGALG00000017142	PSPC1	88	63.347	ENSTRUG00000011335	pspc1	87	62.955	Takifugu_rubripes
ENSGALG00000017142	PSPC1	88	64.882	ENSTNIG00000010358	pspc1	87	63.734	Tetraodon_nigroviridis
ENSGALG00000017142	PSPC1	89	74.304	ENSTBEG00000002361	PSPC1	88	73.019	Tupaia_belangeri
ENSGALG00000017142	PSPC1	99	87.879	ENSTTRG00000003343	PSPC1	99	87.500	Tursiops_truncatus
ENSGALG00000017142	PSPC1	66	88.439	ENSUAMG00000012309	PSPC1	82	98.606	Ursus_americanus
ENSGALG00000017142	PSPC1	93	91.820	ENSUMAG00000013993	PSPC1	95	95.022	Ursus_maritimus
ENSGALG00000017142	PSPC1	76	94.750	ENSVPAG00000010029	PSPC1	100	94.750	Vicugna_pacos
ENSGALG00000017142	PSPC1	99	87.838	ENSVVUG00000006414	PSPC1	99	87.666	Vulpes_vulpes
ENSGALG00000017142	PSPC1	62	76.074	ENSXCOG00000017438	pspc1	77	76.074	Xiphophorus_couchianus
ENSGALG00000017142	PSPC1	62	76.380	ENSXMAG00000007929	pspc1	77	76.380	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000976	transcription regulatory region sequence-specific DNA binding	21873635.	IBA	Function
GO:0001650	fibrillar center	-	IEA	Component
GO:0002218	activation of innate immune response	-	IEA	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0016363	nuclear matrix	-	IEA	Component
GO:0016607	nuclear speck	-	IEA	Component
GO:0042382	paraspeckles	-	IEA	Component
GO:0042752	regulation of circadian rhythm	-	ISS	Process
GO:0045892	negative regulation of transcription, DNA-templated	-	IEA	Process
GO:0048511	rhythmic process	-	IEA	Process
GO:0070888	E-box binding	-	IEA	Function