EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSGALG00000017368 (Gene tree)
Gene ID: 416103
Gene Symbol: TRNT1
Alias: CCA1|CGI-47|MtCCA
Full Name: tRNA nucleotidyl transferase 1
Gene Type: protein_coding
Species: Gallus_gallus
Status: putative
Strand: Plus strand
Length: 3638 bases
Position: chr12:18506274-18509911
Accession: 416103
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGALP00000048192	PolyA_pol	PF01743.20	5.9e-33	1	1
ENSGALP00000063808	PolyA_pol	PF01743.20	5.9e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGALT00000089500	TRNT1-201	1404	XM_015293207	ENSGALP00000063808	431 (aa)	XP_015148693	A0A1L1RY78
ENSGALT00000070790	TRNT1-202	1452	XM_015293208	ENSGALP00000048192	431 (aa)	XP_015148694	A0A1D5P668

Gene Model

Click here to download ENSGALG00000017368's gene model file

Pathways

Pathway ID	Pathway Name	Source
gga03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSGALG00000017368's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGALG00000017368	TRNT1	94	74.384	ENSG00000072756	TRNT1	94	74.384	Homo_sapiens
ENSGALG00000017368	TRNT1	99	63.934	ENSAPOG00000013687	trnt1	99	63.934	Acanthochromis_polyacanthus
ENSGALG00000017368	TRNT1	94	74.447	ENSAMEG00000014520	TRNT1	93	74.447	Ailuropoda_melanoleuca
ENSGALG00000017368	TRNT1	97	65.485	ENSACIG00000021706	trnt1	99	65.485	Amphilophus_citrinellus
ENSGALG00000017368	TRNT1	99	63.256	ENSAOCG00000024612	trnt1	99	63.256	Amphiprion_ocellaris
ENSGALG00000017368	TRNT1	98	57.109	ENSAPEG00000022627	trnt1	97	57.109	Amphiprion_percula
ENSGALG00000017368	TRNT1	93	68.238	ENSATEG00000008928	trnt1	99	68.238	Anabas_testudineus
ENSGALG00000017368	TRNT1	90	90.155	ENSAPLG00000004258	TRNT1	96	90.155	Anas_platyrhynchos
ENSGALG00000017368	TRNT1	94	76.355	ENSACAG00000005657	TRNT1	93	76.355	Anolis_carolinensis
ENSGALG00000017368	TRNT1	99	72.066	ENSANAG00000024802	TRNT1	97	72.066	Aotus_nancymaae
ENSGALG00000017368	TRNT1	97	64.235	ENSACLG00000022227	trnt1	99	64.235	Astatotilapia_calliptera
ENSGALG00000017368	TRNT1	100	64.352	ENSAMXG00000003960	trnt1	99	64.501	Astyanax_mexicanus
ENSGALG00000017368	TRNT1	99	71.230	ENSBTAG00000019534	TRNT1	98	71.230	Bos_taurus
ENSGALG00000017368	TRNT1	93	42.926	WBGene00010089	hpo-31	93	42.926	Caenorhabditis_elegans
ENSGALG00000017368	TRNT1	99	72.770	ENSCJAG00000015466	TRNT1	97	72.770	Callithrix_jacchus
ENSGALG00000017368	TRNT1	94	75.309	ENSCAFG00000005985	TRNT1	93	75.309	Canis_familiaris
ENSGALG00000017368	TRNT1	94	75.309	ENSCAFG00020014746	TRNT1	93	75.309	Canis_lupus_dingo
ENSGALG00000017368	TRNT1	99	71.462	ENSCHIG00000007030	TRNT1	98	71.462	Capra_hircus
ENSGALG00000017368	TRNT1	94	74.631	ENSTSYG00000013390	TRNT1	94	74.631	Carlito_syrichta
ENSGALG00000017368	TRNT1	87	60.847	ENSCAPG00000006891	TRNT1	100	60.847	Cavia_aperea
ENSGALG00000017368	TRNT1	94	73.827	ENSCPOG00000007849	TRNT1	93	73.827	Cavia_porcellus
ENSGALG00000017368	TRNT1	98	70.755	ENSCCAG00000002919	TRNT1	100	73.566	Cebus_capucinus
ENSGALG00000017368	TRNT1	98	72.235	ENSCATG00000031985	TRNT1	96	72.235	Cercocebus_atys
ENSGALG00000017368	TRNT1	99	70.930	ENSCLAG00000005186	TRNT1	98	70.930	Chinchilla_lanigera
ENSGALG00000017368	TRNT1	99	72.535	ENSCSAG00000011052	TRNT1	97	72.535	Chlorocebus_sabaeus
ENSGALG00000017368	TRNT1	78	78.161	ENSCHOG00000005712	TRNT1	78	78.161	Choloepus_hoffmanni
ENSGALG00000017368	TRNT1	100	76.941	ENSCPBG00000017636	TRNT1	100	76.941	Chrysemys_picta_bellii
ENSGALG00000017368	TRNT1	93	45.050	ENSCING00000007069	-	99	45.050	Ciona_intestinalis
ENSGALG00000017368	TRNT1	93	45.050	ENSCSAVG00000007494	-	95	45.050	Ciona_savignyi
ENSGALG00000017368	TRNT1	99	72.535	ENSCANG00000039030	TRNT1	97	72.535	Colobus_angolensis_palliatus
ENSGALG00000017368	TRNT1	96	73.494	ENSCGRG00001009998	Trnt1	96	73.494	Cricetulus_griseus_chok1gshd
ENSGALG00000017368	TRNT1	96	73.494	ENSCGRG00000013410	Trnt1	96	73.494	Cricetulus_griseus_crigri
ENSGALG00000017368	TRNT1	94	66.667	ENSCSEG00000008157	trnt1	96	67.179	Cynoglossus_semilaevis
ENSGALG00000017368	TRNT1	97	65.952	ENSCVAG00000019770	trnt1	99	65.952	Cyprinodon_variegatus
ENSGALG00000017368	TRNT1	99	66.125	ENSDARG00000075297	trnt1	99	66.125	Danio_rerio
ENSGALG00000017368	TRNT1	94	74.815	ENSDNOG00000008837	TRNT1	93	74.815	Dasypus_novemcinctus
ENSGALG00000017368	TRNT1	96	73.253	ENSDORG00000014035	Trnt1	96	73.253	Dipodomys_ordii
ENSGALG00000017368	TRNT1	97	46.099	FBgn0037369	CG2100	87	46.099	Drosophila_melanogaster
ENSGALG00000017368	TRNT1	55	77.406	ENSETEG00000018177	TRNT1	96	77.406	Echinops_telfairi
ENSGALG00000017368	TRNT1	93	64.160	ENSEBUG00000012779	-	94	64.160	Eptatretus_burgeri
ENSGALG00000017368	TRNT1	94	75.862	ENSEASG00005003577	TRNT1	94	75.862	Equus_asinus_asinus
ENSGALG00000017368	TRNT1	94	75.616	ENSECAG00000014420	TRNT1	94	75.616	Equus_caballus
ENSGALG00000017368	TRNT1	98	70.629	ENSEEUG00000009567	TRNT1	99	70.629	Erinaceus_europaeus
ENSGALG00000017368	TRNT1	95	66.259	ENSELUG00000003802	trnt1	95	66.259	Esox_lucius
ENSGALG00000017368	TRNT1	94	75.309	ENSFCAG00000026805	TRNT1	93	75.309	Felis_catus
ENSGALG00000017368	TRNT1	89	86.719	ENSFALG00000013539	TRNT1	100	86.719	Ficedula_albicollis
ENSGALG00000017368	TRNT1	94	73.333	ENSFDAG00000018412	TRNT1	93	73.333	Fukomys_damarensis
ENSGALG00000017368	TRNT1	94	66.422	ENSFHEG00000019294	trnt1	96	66.422	Fundulus_heteroclitus
ENSGALG00000017368	TRNT1	96	64.692	ENSGMOG00000007460	trnt1	99	64.692	Gadus_morhua
ENSGALG00000017368	TRNT1	97	67.299	ENSGAFG00000008647	trnt1	99	67.299	Gambusia_affinis
ENSGALG00000017368	TRNT1	99	62.791	ENSGACG00000011903	trnt1	96	67.016	Gasterosteus_aculeatus
ENSGALG00000017368	TRNT1	100	77.273	ENSGAGG00000020942	TRNT1	100	77.273	Gopherus_agassizii
ENSGALG00000017368	TRNT1	94	74.877	ENSGGOG00000015286	TRNT1	94	74.877	Gorilla_gorilla
ENSGALG00000017368	TRNT1	97	64.235	ENSHBUG00000002797	trnt1	99	64.235	Haplochromis_burtoni
ENSGALG00000017368	TRNT1	94	68.966	ENSHGLG00000000221	-	93	68.966	Heterocephalus_glaber_female
ENSGALG00000017368	TRNT1	96	73.430	ENSHGLG00000003649	TRNT1	95	73.430	Heterocephalus_glaber_female
ENSGALG00000017368	TRNT1	96	72.705	ENSHGLG00100016421	TRNT1	95	72.705	Heterocephalus_glaber_male
ENSGALG00000017368	TRNT1	99	63.488	ENSHCOG00000010618	trnt1	99	63.488	Hippocampus_comes
ENSGALG00000017368	TRNT1	99	65.358	ENSIPUG00000000971	trnt1	99	65.358	Ictalurus_punctatus
ENSGALG00000017368	TRNT1	94	74.321	ENSSTOG00000000150	TRNT1	93	74.321	Ictidomys_tridecemlineatus
ENSGALG00000017368	TRNT1	100	71.065	ENSJJAG00000018561	Trnt1	98	71.065	Jaculus_jaculus
ENSGALG00000017368	TRNT1	94	66.422	ENSKMAG00000011307	trnt1	96	66.422	Kryptolebias_marmoratus
ENSGALG00000017368	TRNT1	98	60.427	ENSLBEG00000019457	trnt1	99	60.427	Labrus_bergylta
ENSGALG00000017368	TRNT1	94	74.321	ENSLACG00000013227	TRNT1	93	74.321	Latimeria_chalumnae
ENSGALG00000017368	TRNT1	100	67.981	ENSLOCG00000011105	trnt1	99	67.981	Lepisosteus_oculatus
ENSGALG00000017368	TRNT1	94	75.802	ENSLAFG00000023191	TRNT1	93	75.802	Loxodonta_africana
ENSGALG00000017368	TRNT1	98	72.471	ENSMFAG00000045113	TRNT1	96	72.471	Macaca_fascicularis
ENSGALG00000017368	TRNT1	98	72.471	ENSMMUG00000017983	TRNT1	96	72.471	Macaca_mulatta
ENSGALG00000017368	TRNT1	98	72.471	ENSMNEG00000037805	TRNT1	96	72.471	Macaca_nemestrina
ENSGALG00000017368	TRNT1	88	75.654	ENSMLEG00000033671	TRNT1	99	75.654	Mandrillus_leucophaeus
ENSGALG00000017368	TRNT1	99	64.186	ENSMAMG00000023401	trnt1	99	64.186	Mastacembelus_armatus
ENSGALG00000017368	TRNT1	97	64.235	ENSMZEG00005009141	trnt1	99	64.235	Maylandia_zebra
ENSGALG00000017368	TRNT1	74	95.000	ENSMGAG00000009971	TRNT1	100	95.000	Meleagris_gallopavo
ENSGALG00000017368	TRNT1	96	73.253	ENSMAUG00000020707	Trnt1	96	73.253	Mesocricetus_auratus
ENSGALG00000017368	TRNT1	96	74.638	ENSMICG00000016615	TRNT1	95	74.638	Microcebus_murinus
ENSGALG00000017368	TRNT1	96	74.217	ENSMOCG00000004539	Trnt1	96	74.217	Microtus_ochrogaster
ENSGALG00000017368	TRNT1	99	63.488	ENSMMOG00000010742	trnt1	99	63.488	Mola_mola
ENSGALG00000017368	TRNT1	94	75.369	ENSMODG00000004368	TRNT1	94	75.369	Monodelphis_domestica
ENSGALG00000017368	TRNT1	99	63.721	ENSMALG00000008376	trnt1	99	63.721	Monopterus_albus
ENSGALG00000017368	TRNT1	96	72.771	MGP_CAROLIEiJ_G0028698	Trnt1	96	73.208	Mus_caroli
ENSGALG00000017368	TRNT1	96	73.012	ENSMUSG00000013736	Trnt1	96	73.012	Mus_musculus
ENSGALG00000017368	TRNT1	96	73.012	MGP_PahariEiJ_G0022449	Trnt1	97	74.000	Mus_pahari
ENSGALG00000017368	TRNT1	96	72.771	MGP_SPRETEiJ_G0029726	Trnt1	96	72.771	Mus_spretus
ENSGALG00000017368	TRNT1	94	75.309	ENSMPUG00000017017	TRNT1	93	75.309	Mustela_putorius_furo
ENSGALG00000017368	TRNT1	89	75.325	ENSMLUG00000011864	TRNT1	99	75.325	Myotis_lucifugus
ENSGALG00000017368	TRNT1	96	72.771	ENSNGAG00000000537	Trnt1	96	72.771	Nannospalax_galili
ENSGALG00000017368	TRNT1	78	64.348	ENSNBRG00000023606	trnt1	99	64.348	Neolamprologus_brichardi
ENSGALG00000017368	TRNT1	94	75.123	ENSNLEG00000003226	TRNT1	94	75.123	Nomascus_leucogenys
ENSGALG00000017368	TRNT1	94	75.862	ENSMEUG00000004684	TRNT1	94	75.862	Notamacropus_eugenii
ENSGALG00000017368	TRNT1	89	69.191	ENSOPRG00000015067	TRNT1	99	69.191	Ochotona_princeps
ENSGALG00000017368	TRNT1	94	74.321	ENSODEG00000007597	TRNT1	93	74.321	Octodon_degus
ENSGALG00000017368	TRNT1	99	64.269	ENSONIG00000020273	trnt1	99	64.269	Oreochromis_niloticus
ENSGALG00000017368	TRNT1	94	75.309	ENSOANG00000007514	TRNT1	93	75.309	Ornithorhynchus_anatinus
ENSGALG00000017368	TRNT1	94	71.358	ENSOCUG00000008580	TRNT1	94	71.358	Oryctolagus_cuniculus
ENSGALG00000017368	TRNT1	95	64.792	ENSORLG00000003165	trnt1	97	64.792	Oryzias_latipes
ENSGALG00000017368	TRNT1	95	65.281	ENSORLG00020022060	trnt1	97	65.281	Oryzias_latipes_hni
ENSGALG00000017368	TRNT1	95	64.792	ENSORLG00015018915	trnt1	96	64.792	Oryzias_latipes_hsok
ENSGALG00000017368	TRNT1	94	65.594	ENSOMEG00000003331	trnt1	96	65.594	Oryzias_melastigma
ENSGALG00000017368	TRNT1	99	71.462	ENSOARG00000008631	TRNT1	98	71.462	Ovis_aries
ENSGALG00000017368	TRNT1	94	74.631	ENSPPAG00000043566	TRNT1	94	74.631	Pan_paniscus
ENSGALG00000017368	TRNT1	94	75.062	ENSPPRG00000001327	TRNT1	93	75.062	Panthera_pardus
ENSGALG00000017368	TRNT1	94	75.062	ENSPTIG00000011448	TRNT1	93	75.062	Panthera_tigris_altaica
ENSGALG00000017368	TRNT1	94	74.384	ENSPTRG00000014564	TRNT1	94	74.384	Pan_troglodytes
ENSGALG00000017368	TRNT1	98	72.235	ENSPANG00000025944	TRNT1	96	72.235	Papio_anubis
ENSGALG00000017368	TRNT1	99	67.048	ENSPKIG00000020015	trnt1	99	67.048	Paramormyrops_kingsleyae
ENSGALG00000017368	TRNT1	92	79.597	ENSPSIG00000017356	TRNT1	99	81.111	Pelodiscus_sinensis
ENSGALG00000017368	TRNT1	99	64.419	ENSPMGG00000008888	trnt1	98	64.419	Periophthalmus_magnuspinnatus
ENSGALG00000017368	TRNT1	96	73.012	ENSPEMG00000019845	Trnt1	96	73.012	Peromyscus_maniculatus_bairdii
ENSGALG00000017368	TRNT1	99	72.300	ENSPCIG00000030436	TRNT1	97	72.300	Phascolarctos_cinereus
ENSGALG00000017368	TRNT1	97	67.458	ENSPFOG00000006194	trnt1	99	67.458	Poecilia_formosa
ENSGALG00000017368	TRNT1	97	67.458	ENSPLAG00000015623	trnt1	99	69.479	Poecilia_latipinna
ENSGALG00000017368	TRNT1	97	67.221	ENSPMEG00000012216	trnt1	99	69.231	Poecilia_mexicana
ENSGALG00000017368	TRNT1	97	66.825	ENSPREG00000021470	trnt1	99	66.825	Poecilia_reticulata
ENSGALG00000017368	TRNT1	99	72.770	ENSPPYG00000013702	TRNT1	97	72.770	Pongo_abelii
ENSGALG00000017368	TRNT1	89	77.023	ENSPCAG00000001951	TRNT1	100	77.023	Procavia_capensis
ENSGALG00000017368	TRNT1	94	75.062	ENSPCOG00000022228	TRNT1	93	75.062	Propithecus_coquereli
ENSGALG00000017368	TRNT1	89	74.740	ENSPVAG00000008784	TRNT1	100	74.740	Pteropus_vampyrus
ENSGALG00000017368	TRNT1	97	64.000	ENSPNYG00000003120	trnt1	99	64.000	Pundamilia_nyererei
ENSGALG00000017368	TRNT1	99	63.741	ENSPNAG00000000565	trnt1	99	63.741	Pygocentrus_nattereri
ENSGALG00000017368	TRNT1	99	70.901	ENSRNOG00000006432	Trnt1	99	70.901	Rattus_norvegicus
ENSGALG00000017368	TRNT1	99	71.127	ENSRBIG00000042632	TRNT1	97	71.127	Rhinopithecus_bieti
ENSGALG00000017368	TRNT1	99	72.300	ENSRROG00000036866	TRNT1	97	72.300	Rhinopithecus_roxellana
ENSGALG00000017368	TRNT1	99	72.066	ENSSBOG00000021208	TRNT1	97	72.066	Saimiri_boliviensis_boliviensis
ENSGALG00000017368	TRNT1	94	74.384	ENSSHAG00000018861	TRNT1	94	74.384	Sarcophilus_harrisii
ENSGALG00000017368	TRNT1	99	66.979	ENSSFOG00015020844	trnt1	99	66.979	Scleropages_formosus
ENSGALG00000017368	TRNT1	99	63.488	ENSSMAG00000015432	trnt1	98	63.488	Scophthalmus_maximus
ENSGALG00000017368	TRNT1	99	62.791	ENSSDUG00000012320	trnt1	100	62.791	Seriola_dumerili
ENSGALG00000017368	TRNT1	99	62.791	ENSSLDG00000009325	trnt1	100	62.791	Seriola_lalandi_dorsalis
ENSGALG00000017368	TRNT1	56	62.241	ENSSLDG00000016463	-	91	62.343	Seriola_lalandi_dorsalis
ENSGALG00000017368	TRNT1	89	79.948	ENSSPUG00000014153	TRNT1	100	79.948	Sphenodon_punctatus
ENSGALG00000017368	TRNT1	99	63.023	ENSSPAG00000021005	trnt1	99	63.023	Stegastes_partitus
ENSGALG00000017368	TRNT1	94	74.631	ENSSSCG00000011529	TRNT1	94	74.631	Sus_scrofa
ENSGALG00000017368	TRNT1	94	86.914	ENSTGUG00000010192	TRNT1	100	86.914	Taeniopygia_guttata
ENSGALG00000017368	TRNT1	99	63.488	ENSTRUG00000001088	trnt1	99	63.488	Takifugu_rubripes
ENSGALG00000017368	TRNT1	94	66.337	ENSTNIG00000007363	trnt1	93	66.337	Tetraodon_nigroviridis
ENSGALG00000017368	TRNT1	60	62.934	ENSTBEG00000006367	TRNT1	84	62.934	Tupaia_belangeri
ENSGALG00000017368	TRNT1	99	71.230	ENSTTRG00000007803	TRNT1	98	71.230	Tursiops_truncatus
ENSGALG00000017368	TRNT1	94	75.062	ENSUAMG00000022574	TRNT1	93	75.062	Ursus_americanus
ENSGALG00000017368	TRNT1	94	74.815	ENSUMAG00000024092	TRNT1	93	74.815	Ursus_maritimus
ENSGALG00000017368	TRNT1	94	75.309	ENSVVUG00000012810	TRNT1	93	75.309	Vulpes_vulpes
ENSGALG00000017368	TRNT1	97	64.953	ENSXETG00000025091	trnt1	99	67.742	Xenopus_tropicalis
ENSGALG00000017368	TRNT1	97	67.062	ENSXCOG00000010150	trnt1	99	67.062	Xiphophorus_couchianus
ENSGALG00000017368	TRNT1	97	67.299	ENSXMAG00000002227	trnt1	99	67.299	Xiphophorus_maculatus