EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSGALG00000019355 (Gene tree)
Gene ID: 417844
Gene Symbol: CPSF6
Alias: -
Full Name: Gallus gallus cleavage and polyadenylation specific factor 6 (CPSF6)%2C mRNA.
Gene Type: protein_coding
Species: Gallus_gallus
Status: putative
Strand: Plus strand
Length: 25075 bases
Position: chr1:35503179-35528253
Accession: NM_001039271
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGALP00000016173	RRM_1	PF00076.22	8.4e-07	1	1
ENSGALP00000049306	RRM_1	PF00076.22	9e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGALT00000081509	-	1754	-	ENSGALP00000049306	582 (aa)	XP_015137219	A0A1D5P9A5
ENSGALT00000016192	-	2165	-	ENSGALP00000016173	551 (aa)	-	F1NGU9

Gene Model

Click here to download ENSGALG00000019355's gene model file

Pathways

Pathway ID	Pathway Name	Source
gga03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSGALG00000019355's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGALG00000019355	CPSF6	77	83.908	ENSAPOG00000009771	-	94	82.218	Acanthochromis_polyacanthus
ENSGALG00000019355	CPSF6	77	83.908	ENSAPEG00000004361	-	94	82.218	Amphiprion_percula
ENSGALG00000019355	CPSF6	74	98.276	ENSAPLG00000010887	CPSF6	100	98.276	Anas_platyrhynchos
ENSGALG00000019355	CPSF6	95	43.333	ENSCPBG00000017691	-	66	62.879	Chrysemys_picta_bellii
ENSGALG00000019355	CPSF6	76	56.410	ENSDORG00000000998	-	81	57.143	Dipodomys_ordii

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003729	mRNA binding	-	ISS	Function
GO:0005634	nucleus	-	ISS	Component
GO:0005654	nucleoplasm	-	ISS	Component
GO:0005726	perichromatin fibrils	-	ISS	Component
GO:0005737	cytoplasm	-	ISS	Component
GO:0005849	mRNA cleavage factor complex	-	ISS	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0016607	nuclear speck	-	ISS	Component
GO:0035061	interchromatin granule	-	ISS	Component
GO:0042382	paraspeckles	-	ISS	Component
GO:0046833	positive regulation of RNA export from nucleus	-	ISS	Process
GO:0051290	protein heterotetramerization	-	ISS	Process
GO:0110104	mRNA alternative polyadenylation	-	ISS	Process
GO:1990120	messenger ribonucleoprotein complex assembly	-	ISS	Process