EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSGALG00000029918 (Gene tree)
Gene ID: 425473
Gene Symbol: -
Alias: -
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Gallus_gallus
Status: putative
Strand: Minus strand
Length: 20251 bases
Position: chr23:6073419-6093669
Accession: 425473
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGALP00000055892	EST1	PF10374.9	1.2e-24	1	1
ENSGALP00000054021	EST1	PF10374.9	3e-24	1	1
ENSGALP00000066100	EST1	PF10374.9	4.4e-21	1	1
ENSGALP00000054021	EST1_DNA_bind	PF10373.9	9.5e-40	1	2
ENSGALP00000054021	EST1_DNA_bind	PF10373.9	9.5e-40	2	2
ENSGALP00000055892	EST1_DNA_bind	PF10373.9	9.7e-40	1	2
ENSGALP00000055892	EST1_DNA_bind	PF10373.9	9.7e-40	2	2
ENSGALP00000066100	EST1_DNA_bind	PF10373.9	1e-35	1	2
ENSGALP00000066100	EST1_DNA_bind	PF10373.9	1e-35	2	2
ENSGALP00000066100	PIN_4	PF13638.6	2.4e-05	1	1
ENSGALP00000054021	PIN_4	PF13638.6	2.5e-05	1	1
ENSGALP00000055892	PIN_4	PF13638.6	2.5e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGALT00000059759	-	4168	-	ENSGALP00000055892	1049 (aa)	XP_015153804	A0A1D5PSK6
ENSGALT00000067650	-	3182	-	ENSGALP00000054021	1040 (aa)	XP_015153805	A0A1D5PME4
ENSGALT00000106059	-	4078	-	ENSGALP00000066100	1019 (aa)	-	-

Gene Model

Click here to download ENSGALG00000029918's gene model file

Pathways

Pathway ID	Pathway Name	Source
gga03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSGALG00000029918's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGALG00000029918	-	100	77.324	ENSG00000198952	SMG5	99	77.618	Homo_sapiens
ENSGALG00000029918	-	99	66.571	ENSAPOG00000019690	smg5	99	66.218	Acanthochromis_polyacanthus
ENSGALG00000029918	-	98	75.195	ENSAMEG00000014458	SMG5	100	75.486	Ailuropoda_melanoleuca
ENSGALG00000029918	-	99	65.213	ENSACIG00000001353	smg5	99	65.744	Amphilophus_citrinellus
ENSGALG00000029918	-	99	64.436	ENSAOCG00000019483	smg5	99	64.103	Amphiprion_ocellaris
ENSGALG00000029918	-	99	65.616	ENSAPEG00000022949	smg5	99	66.285	Amphiprion_percula
ENSGALG00000029918	-	99	65.377	ENSATEG00000005348	smg5	99	66.477	Anabas_testudineus
ENSGALG00000029918	-	98	90.625	ENSAPLG00000010263	SMG5	100	90.625	Anas_platyrhynchos
ENSGALG00000029918	-	100	77.714	ENSANAG00000032899	SMG5	99	78.014	Aotus_nancymaae
ENSGALG00000029918	-	99	64.939	ENSACLG00000009311	smg5	99	65.935	Astatotilapia_calliptera
ENSGALG00000029918	-	91	74.171	ENSAMXG00000024616	smg5	99	64.572	Astyanax_mexicanus
ENSGALG00000029918	-	99	42.404	ENSBTAG00000021747	-	98	42.222	Bos_taurus
ENSGALG00000029918	-	100	78.000	ENSBTAG00000009435	SMG5	99	78.110	Bos_taurus
ENSGALG00000029918	-	100	77.810	ENSCJAG00000005684	SMG5	99	78.110	Callithrix_jacchus
ENSGALG00000029918	-	100	75.806	ENSCAFG00000016839	SMG5	99	76.663	Canis_familiaris
ENSGALG00000029918	-	100	75.806	ENSCAFG00020006061	SMG5	99	76.663	Canis_lupus_dingo
ENSGALG00000029918	-	100	77.429	ENSCHIG00000007709	SMG5	99	77.917	Capra_hircus
ENSGALG00000029918	-	99	43.022	ENSCHIG00000006323	-	99	42.456	Capra_hircus
ENSGALG00000029918	-	100	77.429	ENSTSYG00000004099	SMG5	99	77.842	Carlito_syrichta
ENSGALG00000029918	-	95	59.096	ENSCAPG00000003631	SMG5	100	59.939	Cavia_aperea
ENSGALG00000029918	-	100	76.740	ENSCPOG00000015696	SMG5	99	77.596	Cavia_porcellus
ENSGALG00000029918	-	100	77.714	ENSCCAG00000027409	SMG5	99	78.014	Cebus_capucinus
ENSGALG00000029918	-	100	77.714	ENSCATG00000030539	SMG5	99	78.014	Cercocebus_atys
ENSGALG00000029918	-	100	76.644	ENSCLAG00000003983	SMG5	99	77.575	Chinchilla_lanigera
ENSGALG00000029918	-	100	77.714	ENSCSAG00000002120	SMG5	99	78.014	Chlorocebus_sabaeus
ENSGALG00000029918	-	53	83.394	ENSCHOG00000008741	-	57	83.394	Choloepus_hoffmanni
ENSGALG00000029918	-	94	85.584	ENSCPBG00000025848	SMG5	100	85.584	Chrysemys_picta_bellii
ENSGALG00000029918	-	94	33.465	ENSCING00000008706	-	98	33.699	Ciona_intestinalis
ENSGALG00000029918	-	100	74.381	ENSCANG00000029208	SMG5	99	74.638	Colobus_angolensis_palliatus
ENSGALG00000029918	-	100	76.901	ENSCGRG00001006336	Smg5	99	77.531	Cricetulus_griseus_chok1gshd
ENSGALG00000029918	-	98	76.923	ENSCGRG00000005111	Smg5	100	77.246	Cricetulus_griseus_crigri
ENSGALG00000029918	-	99	64.265	ENSCSEG00000014220	smg5	99	64.408	Cynoglossus_semilaevis
ENSGALG00000029918	-	99	60.815	ENSCVAG00000000529	smg5	99	61.463	Cyprinodon_variegatus
ENSGALG00000029918	-	93	74.702	ENSDARG00000041481	smg5	99	64.183	Danio_rerio
ENSGALG00000029918	-	100	73.834	ENSDNOG00000000051	SMG5	99	74.349	Dasypus_novemcinctus
ENSGALG00000029918	-	93	35.324	ENSDNOG00000039862	-	100	35.020	Dasypus_novemcinctus
ENSGALG00000029918	-	100	77.260	ENSDORG00000010382	Smg5	99	77.746	Dipodomys_ordii
ENSGALG00000029918	-	67	35.503	FBgn0019890	Smg5	82	35.503	Drosophila_melanogaster
ENSGALG00000029918	-	83	85.437	ENSETEG00000010336	SMG5	90	85.437	Echinops_telfairi
ENSGALG00000029918	-	77	54.194	ENSEBUG00000003739	smg5	98	46.743	Eptatretus_burgeri
ENSGALG00000029918	-	100	77.514	ENSEASG00005019122	SMG5	99	78.002	Equus_asinus_asinus
ENSGALG00000029918	-	100	77.419	ENSECAG00000001389	SMG5	99	77.906	Equus_caballus
ENSGALG00000029918	-	70	93.372	ENSEEUG00000012690	SMG5	75	93.372	Erinaceus_europaeus
ENSGALG00000029918	-	99	66.127	ENSELUG00000012585	smg5	99	66.731	Esox_lucius
ENSGALG00000029918	-	100	75.905	ENSFCAG00000011783	SMG5	99	76.374	Felis_catus
ENSGALG00000029918	-	60	87.937	ENSFALG00000001166	-	100	90.785	Ficedula_albicollis
ENSGALG00000029918	-	98	75.828	ENSFDAG00000017388	SMG5	100	75.926	Fukomys_damarensis
ENSGALG00000029918	-	95	61.216	ENSFHEG00000013939	smg5	98	61.416	Fundulus_heteroclitus
ENSGALG00000029918	-	99	61.661	ENSGMOG00000007310	smg5	99	63.167	Gadus_morhua
ENSGALG00000029918	-	99	57.965	ENSGAFG00000021691	smg5	99	58.839	Gambusia_affinis
ENSGALG00000029918	-	99	62.956	ENSGACG00000013142	smg5	99	63.718	Gasterosteus_aculeatus
ENSGALG00000029918	-	100	86.027	ENSGAGG00000016131	SMG5	100	86.027	Gopherus_agassizii
ENSGALG00000029918	-	100	77.514	ENSGGOG00000010932	SMG5	99	77.810	Gorilla_gorilla
ENSGALG00000029918	-	99	65.316	ENSHBUG00000008654	smg5	99	66.317	Haplochromis_burtoni
ENSGALG00000029918	-	100	75.118	ENSHGLG00000019152	SMG5	99	75.862	Heterocephalus_glaber_female
ENSGALG00000029918	-	90	75.499	ENSHGLG00100015948	SMG5	99	76.296	Heterocephalus_glaber_male
ENSGALG00000029918	-	84	75.124	ENSHCOG00000010229	smg5	91	74.876	Hippocampus_comes
ENSGALG00000029918	-	99	63.043	ENSIPUG00000006624	Smg5	99	64.357	Ictalurus_punctatus
ENSGALG00000029918	-	100	77.714	ENSSTOG00000001780	SMG5	99	77.821	Ictidomys_tridecemlineatus
ENSGALG00000029918	-	100	76.308	ENSJJAG00000022763	Smg5	99	76.493	Jaculus_jaculus
ENSGALG00000029918	-	91	71.963	ENSKMAG00000014586	smg5	99	63.749	Kryptolebias_marmoratus
ENSGALG00000029918	-	99	64.380	ENSLBEG00000002145	smg5	99	64.867	Labrus_bergylta
ENSGALG00000029918	-	100	67.644	ENSLACG00000010521	SMG5	99	68.008	Latimeria_chalumnae
ENSGALG00000029918	-	100	76.571	ENSLAFG00000006241	SMG5	99	77.338	Loxodonta_africana
ENSGALG00000029918	-	100	77.714	ENSMFAG00000045357	SMG5	99	78.014	Macaca_fascicularis
ENSGALG00000029918	-	100	77.714	ENSMMUG00000000090	SMG5	99	78.014	Macaca_mulatta
ENSGALG00000029918	-	100	77.619	ENSMNEG00000044425	SMG5	99	77.917	Macaca_nemestrina
ENSGALG00000029918	-	100	72.011	ENSMLEG00000041192	SMG5	99	72.238	Mandrillus_leucophaeus
ENSGALG00000029918	-	99	62.621	ENSMAMG00000010683	smg5	100	62.849	Mastacembelus_armatus
ENSGALG00000029918	-	99	63.060	ENSMZEG00005015815	smg5	99	63.791	Maylandia_zebra
ENSGALG00000029918	-	66	58.806	ENSMZEG00005016543	smg5	100	58.580	Maylandia_zebra
ENSGALG00000029918	-	100	76.616	ENSMAUG00000010381	Smg5	99	76.856	Mesocricetus_auratus
ENSGALG00000029918	-	100	77.524	ENSMICG00000002257	SMG5	99	77.917	Microcebus_murinus
ENSGALG00000029918	-	100	76.755	ENSMOCG00000016590	Smg5	99	76.663	Microtus_ochrogaster
ENSGALG00000029918	-	99	60.606	ENSMMOG00000017199	smg5	99	61.566	Mola_mola
ENSGALG00000029918	-	78	35.768	ENSMODG00000010675	-	90	36.211	Monodelphis_domestica
ENSGALG00000029918	-	98	33.560	ENSMODG00000004511	-	99	33.527	Monodelphis_domestica
ENSGALG00000029918	-	76	37.867	ENSMODG00000004735	-	89	37.867	Monodelphis_domestica
ENSGALG00000029918	-	88	77.766	ENSMODG00000016901	SMG5	97	79.538	Monodelphis_domestica
ENSGALG00000029918	-	88	36.187	ENSMODG00000004532	-	98	35.526	Monodelphis_domestica
ENSGALG00000029918	-	99	61.741	ENSMALG00000010375	smg5	99	61.968	Monopterus_albus
ENSGALG00000029918	-	100	76.711	MGP_CAROLIEiJ_G0025163	Smg5	100	96.648	Mus_caroli
ENSGALG00000029918	-	100	76.901	ENSMUSG00000001415	Smg5	99	96.648	Mus_musculus
ENSGALG00000029918	-	100	77.091	MGP_PahariEiJ_G0026606	Smg5	100	96.648	Mus_pahari
ENSGALG00000029918	-	100	76.806	MGP_SPRETEiJ_G0026104	Smg5	100	96.648	Mus_spretus
ENSGALG00000029918	-	94	74.367	ENSMPUG00000004546	SMG5	100	74.671	Mustela_putorius_furo
ENSGALG00000029918	-	100	76.046	ENSMLUG00000008518	SMG5	99	76.516	Myotis_lucifugus
ENSGALG00000029918	-	87	56.359	ENSNGAG00000012101	-	98	42.212	Nannospalax_galili
ENSGALG00000029918	-	100	77.165	ENSNGAG00000020706	Smg5	99	77.746	Nannospalax_galili
ENSGALG00000029918	-	97	62.341	ENSNBRG00000004332	smg5	97	62.832	Neolamprologus_brichardi
ENSGALG00000029918	-	100	77.324	ENSNLEG00000012439	SMG5	99	77.618	Nomascus_leucogenys
ENSGALG00000029918	-	100	76.023	ENSMEUG00000012834	SMG5	99	77.553	Notamacropus_eugenii
ENSGALG00000029918	-	100	76.420	ENSOPRG00000009152	SMG5	99	76.702	Ochotona_princeps
ENSGALG00000029918	-	100	76.930	ENSODEG00000012237	SMG5	99	77.220	Octodon_degus
ENSGALG00000029918	-	99	61.850	ENSONIG00000008632	smg5	99	63.798	Oreochromis_niloticus
ENSGALG00000029918	-	98	77.507	ENSOCUG00000012886	SMG5	100	77.897	Oryctolagus_cuniculus
ENSGALG00000029918	-	90	38.730	ENSOCUG00000023338	-	99	38.795	Oryctolagus_cuniculus
ENSGALG00000029918	-	99	60.997	ENSORLG00000016239	smg5	99	64.395	Oryzias_latipes
ENSGALG00000029918	-	99	63.688	ENSORLG00020013127	smg5	99	65.517	Oryzias_latipes_hni
ENSGALG00000029918	-	99	63.791	ENSORLG00015019014	smg5	99	65.521	Oryzias_latipes_hsok
ENSGALG00000029918	-	82	60.423	ENSOMEG00000021330	smg5	92	62.848	Oryzias_melastigma
ENSGALG00000029918	-	100	76.667	ENSOGAG00000004966	SMG5	99	76.953	Otolemur_garnettii
ENSGALG00000029918	-	99	42.967	ENSOARG00000011963	-	99	42.692	Ovis_aries
ENSGALG00000029918	-	100	77.333	ENSOARG00000005778	SMG5	99	77.821	Ovis_aries
ENSGALG00000029918	-	100	77.419	ENSPPAG00000011996	SMG5	99	77.714	Pan_paniscus
ENSGALG00000029918	-	98	75.707	ENSPPRG00000011901	SMG5	100	76.000	Panthera_pardus
ENSGALG00000029918	-	99	69.866	ENSPTIG00000007892	SMG5	99	71.078	Panthera_tigris_altaica
ENSGALG00000029918	-	100	77.419	ENSPTRG00000023925	SMG5	99	77.714	Pan_troglodytes
ENSGALG00000029918	-	100	77.419	ENSPTRG00000049282	-	99	77.714	Pan_troglodytes
ENSGALG00000029918	-	100	77.714	ENSPANG00000011201	SMG5	99	78.014	Papio_anubis
ENSGALG00000029918	-	99	65.968	ENSPKIG00000009402	smg5	99	66.699	Paramormyrops_kingsleyae
ENSGALG00000029918	-	98	86.076	ENSPSIG00000015198	SMG5	100	84.660	Pelodiscus_sinensis
ENSGALG00000029918	-	99	59.732	ENSPMGG00000010465	smg5	99	60.345	Periophthalmus_magnuspinnatus
ENSGALG00000029918	-	100	76.521	ENSPEMG00000001819	Smg5	99	77.146	Peromyscus_maniculatus_bairdii
ENSGALG00000029918	-	98	49.338	ENSPMAG00000000410	smg5	99	50.801	Petromyzon_marinus
ENSGALG00000029918	-	100	77.281	ENSPCIG00000018938	SMG5	99	78.633	Phascolarctos_cinereus
ENSGALG00000029918	-	99	62.566	ENSPFOG00000010191	smg5	99	63.661	Poecilia_formosa
ENSGALG00000029918	-	99	62.544	ENSPLAG00000009332	smg5	99	63.482	Poecilia_latipinna
ENSGALG00000029918	-	99	65.975	ENSPMEG00000014105	smg5	99	66.982	Poecilia_mexicana
ENSGALG00000029918	-	99	62.533	ENSPREG00000017713	smg5	99	63.661	Poecilia_reticulata
ENSGALG00000029918	-	100	77.514	ENSPPYG00000000723	SMG5	99	77.810	Pongo_abelii
ENSGALG00000029918	-	71	96.089	ENSPCAG00000008412	SMG5	75	96.089	Procavia_capensis
ENSGALG00000029918	-	100	78.095	ENSPCOG00000004741	SMG5	99	78.496	Propithecus_coquereli
ENSGALG00000029918	-	100	69.429	ENSPVAG00000016748	SMG5	99	69.913	Pteropus_vampyrus
ENSGALG00000029918	-	99	61.545	ENSPNYG00000013397	smg5	99	63.741	Pundamilia_nyererei
ENSGALG00000029918	-	100	62.602	ENSPNAG00000028363	smg5	100	63.816	Pygocentrus_nattereri
ENSGALG00000029918	-	100	76.521	ENSRNOG00000019590	Smg5	99	77.146	Rattus_norvegicus
ENSGALG00000029918	-	100	77.429	ENSRBIG00000027428	SMG5	99	77.724	Rhinopithecus_bieti
ENSGALG00000029918	-	100	77.429	ENSRROG00000030035	SMG5	99	77.724	Rhinopithecus_roxellana
ENSGALG00000029918	-	100	77.714	ENSSBOG00000033339	SMG5	99	78.206	Saimiri_boliviensis_boliviensis
ENSGALG00000029918	-	76	38.250	ENSSHAG00000000561	-	88	37.990	Sarcophilus_harrisii
ENSGALG00000029918	-	63	37.572	ENSSHAG00000000935	-	84	38.824	Sarcophilus_harrisii
ENSGALG00000029918	-	98	76.550	ENSSHAG00000014163	SMG5	100	77.810	Sarcophilus_harrisii
ENSGALG00000029918	-	74	45.722	ENSSHAG00000009572	-	81	44.416	Sarcophilus_harrisii
ENSGALG00000029918	-	99	66.571	ENSSFOG00015024175	smg5	99	66.922	Scleropages_formosus
ENSGALG00000029918	-	99	61.470	ENSSMAG00000013059	smg5	99	63.790	Scophthalmus_maximus
ENSGALG00000029918	-	99	62.018	ENSSDUG00000007122	smg5	99	63.693	Seriola_dumerili
ENSGALG00000029918	-	99	62.236	ENSSLDG00000011418	smg5	99	64.007	Seriola_lalandi_dorsalis
ENSGALG00000029918	-	85	94.079	ENSSARG00000012484	SMG5	89	97.122	Sorex_araneus
ENSGALG00000029918	-	94	83.502	ENSSPUG00000002260	SMG5	100	83.907	Sphenodon_punctatus
ENSGALG00000029918	-	99	64.038	ENSSPAG00000014266	smg5	99	63.628	Stegastes_partitus
ENSGALG00000029918	-	99	60.724	ENSSSCG00000039308	-	99	61.331	Sus_scrofa
ENSGALG00000029918	-	100	77.514	ENSSSCG00000006490	-	99	78.002	Sus_scrofa
ENSGALG00000029918	-	100	88.011	ENSTGUG00000003748	-	100	88.582	Taeniopygia_guttata
ENSGALG00000029918	-	100	64.218	ENSTRUG00000012580	smg5	99	65.370	Takifugu_rubripes
ENSGALG00000029918	-	100	64.489	ENSTNIG00000010303	smg5	99	65.005	Tetraodon_nigroviridis
ENSGALG00000029918	-	56	95.074	ENSTBEG00000002777	SMG5	59	95.074	Tupaia_belangeri
ENSGALG00000029918	-	100	72.960	ENSTTRG00000001401	SMG5	99	73.103	Tursiops_truncatus
ENSGALG00000029918	-	100	75.951	ENSUAMG00000013721	SMG5	99	76.420	Ursus_americanus
ENSGALG00000029918	-	98	72.136	ENSUMAG00000018041	SMG5	99	71.126	Ursus_maritimus
ENSGALG00000029918	-	98	68.093	ENSVPAG00000009446	SMG5	99	68.580	Vicugna_pacos
ENSGALG00000029918	-	100	76.571	ENSVVUG00000005887	SMG5	99	76.760	Vulpes_vulpes
ENSGALG00000029918	-	79	67.931	ENSXETG00000033791	SMG5	99	67.931	Xenopus_tropicalis
ENSGALG00000029918	-	85	69.730	ENSXCOG00000004379	smg5	98	70.330	Xiphophorus_couchianus
ENSGALG00000029918	-	99	64.822	ENSXMAG00000013499	smg5	99	65.943	Xiphophorus_maculatus