EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSGALG00000031512 (Gene tree)
Gene ID: 429172
Gene Symbol: PAN2
Alias: USP52
Full Name: Gallus gallus poly(A) specific ribonuclease subunit PAN2 (PAN2)%2C mRNA.
Gene Type: protein_coding
Species: Gallus_gallus
Status: putative
Strand: Plus strand
Length: 11506 bases
Position: chr33:6942174-6953679
Accession: NM_001012954
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGALP00000044566	RNase_T	PF00929.24	4.4e-19	1	1
ENSGALP00000055744	RNase_T	PF00929.24	4.4e-19	1	1
ENSGALP00000056405	RNase_T	PF00929.24	6.2e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGALT00000058110	-	3970	XM_015300272	ENSGALP00000044566	1197 (aa)	XP_015155758	Q5F450
ENSGALT00000051091	-	5271	-	ENSGALP00000056405	1439 (aa)	-	A0A1D5PU04
ENSGALT00000078501	-	4545	-	ENSGALP00000055744	1197 (aa)	-	Q5F450

Gene Model

Click here to download ENSGALG00000031512's gene model file

Pathways

Pathway ID	Pathway Name	Source
gga03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSGALG00000031512's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGALG00000031512	PAN2	100	77.759	ENSAPOG00000022955	pan2	99	78.326	Acanthochromis_polyacanthus
ENSGALG00000031512	PAN2	100	85.536	ENSAMEG00000003824	PAN2	100	85.536	Ailuropoda_melanoleuca
ENSGALG00000031512	PAN2	99	61.797	ENSACIG00000012858	PAN2	99	61.797	Amphilophus_citrinellus
ENSGALG00000031512	PAN2	99	77.026	ENSACIG00000013079	pan2	99	77.360	Amphilophus_citrinellus
ENSGALG00000031512	PAN2	100	77.558	ENSAOCG00000022334	pan2	99	78.094	Amphiprion_ocellaris
ENSGALG00000031512	PAN2	100	77.613	ENSAPEG00000022760	pan2	99	77.805	Amphiprion_percula
ENSGALG00000031512	PAN2	99	77.537	ENSATEG00000024030	pan2	100	77.805	Anabas_testudineus
ENSGALG00000031512	PAN2	94	97.589	ENSAPLG00000005195	PAN2	100	97.589	Anas_platyrhynchos
ENSGALG00000031512	PAN2	100	90.894	ENSACAG00000007067	PAN2	100	90.894	Anolis_carolinensis
ENSGALG00000031512	PAN2	100	85.429	ENSANAG00000036468	PAN2	99	86.863	Aotus_nancymaae
ENSGALG00000031512	PAN2	99	61.985	ENSACLG00000023821	pan2	99	62.139	Astatotilapia_calliptera
ENSGALG00000031512	PAN2	100	77.723	ENSACLG00000023674	pan2	99	78.055	Astatotilapia_calliptera
ENSGALG00000031512	PAN2	99	77.500	ENSAMXG00000005418	pan2	98	77.500	Astyanax_mexicanus
ENSGALG00000031512	PAN2	100	86.012	ENSBTAG00000004376	PAN2	100	86.012	Bos_taurus
ENSGALG00000031512	PAN2	100	85.453	ENSCJAG00000011141	PAN2	100	85.453	Callithrix_jacchus
ENSGALG00000031512	PAN2	100	85.595	ENSCAFG00000000119	PAN2	100	85.897	Canis_familiaris
ENSGALG00000031512	PAN2	100	84.609	ENSCAFG00020024865	PAN2	100	84.609	Canis_lupus_dingo
ENSGALG00000031512	PAN2	100	84.959	ENSCHIG00000026935	PAN2	100	84.959	Capra_hircus
ENSGALG00000031512	PAN2	100	84.959	ENSTSYG00000006927	PAN2	99	87.131	Carlito_syrichta
ENSGALG00000031512	PAN2	100	84.934	ENSCPOG00000014918	PAN2	100	84.934	Cavia_porcellus
ENSGALG00000031512	PAN2	100	85.536	ENSCCAG00000036637	PAN2	99	87.131	Cebus_capucinus
ENSGALG00000031512	PAN2	100	85.762	ENSCATG00000045076	PAN2	99	87.601	Cercocebus_atys
ENSGALG00000031512	PAN2	100	85.513	ENSCLAG00000011700	PAN2	100	85.513	Chinchilla_lanigera
ENSGALG00000031512	PAN2	100	85.536	ENSCSAG00000005173	PAN2	100	85.536	Chlorocebus_sabaeus
ENSGALG00000031512	PAN2	100	93.233	ENSCPBG00000014029	PAN2	100	93.317	Chrysemys_picta_bellii
ENSGALG00000031512	PAN2	91	46.837	ENSCSAVG00000003833	-	99	55.446	Ciona_savignyi
ENSGALG00000031512	PAN2	100	83.887	ENSCANG00000017798	PAN2	100	83.887	Colobus_angolensis_palliatus
ENSGALG00000031512	PAN2	100	85.012	ENSCGRG00001019707	Pan2	100	85.012	Cricetulus_griseus_chok1gshd
ENSGALG00000031512	PAN2	100	84.132	ENSCGRG00000009996	Pan2	100	84.132	Cricetulus_griseus_crigri
ENSGALG00000031512	PAN2	100	73.802	ENSCSEG00000021529	pan2	99	73.942	Cynoglossus_semilaevis
ENSGALG00000031512	PAN2	100	77.393	ENSCVAG00000010197	pan2	100	77.318	Cyprinodon_variegatus
ENSGALG00000031512	PAN2	100	75.931	ENSDARG00000074675	pan2	99	76.781	Danio_rerio
ENSGALG00000031512	PAN2	100	85.571	ENSDNOG00000010940	PAN2	100	85.571	Dasypus_novemcinctus
ENSGALG00000031512	PAN2	93	42.822	FBgn0033352	PAN2	96	42.869	Drosophila_melanogaster
ENSGALG00000031512	PAN2	75	90.028	ENSETEG00000012041	PAN2	82	90.286	Echinops_telfairi
ENSGALG00000031512	PAN2	98	58.929	ENSEBUG00000002773	pan2	98	58.929	Eptatretus_burgeri
ENSGALG00000031512	PAN2	100	85.301	ENSEASG00005005235	PAN2	100	85.301	Equus_asinus_asinus
ENSGALG00000031512	PAN2	100	86.012	ENSECAG00000019814	PAN2	100	86.012	Equus_caballus
ENSGALG00000031512	PAN2	99	77.012	ENSELUG00000024604	pan2	99	77.527	Esox_lucius
ENSGALG00000031512	PAN2	100	85.453	ENSFCAG00000012021	PAN2	100	85.453	Felis_catus
ENSGALG00000031512	PAN2	99	95.025	ENSFALG00000000464	PAN2	98	95.110	Ficedula_albicollis
ENSGALG00000031512	PAN2	100	85.041	ENSFDAG00000017104	PAN2	100	85.041	Fukomys_damarensis
ENSGALG00000031512	PAN2	91	76.396	ENSFHEG00000000157	pan2	97	75.591	Fundulus_heteroclitus
ENSGALG00000031512	PAN2	100	75.743	ENSGMOG00000007249	pan2	99	76.167	Gadus_morhua
ENSGALG00000031512	PAN2	100	77.558	ENSGAFG00000000284	pan2	100	77.510	Gambusia_affinis
ENSGALG00000031512	PAN2	100	76.403	ENSGACG00000010722	pan2	99	77.371	Gasterosteus_aculeatus
ENSGALG00000031512	PAN2	100	92.899	ENSGAGG00000007868	PAN2	100	92.982	Gopherus_agassizii
ENSGALG00000031512	PAN2	100	85.370	ENSGGOG00000009115	PAN2	99	87.332	Gorilla_gorilla
ENSGALG00000031512	PAN2	100	77.750	ENSHBUG00000005234	pan2	99	78.410	Haplochromis_burtoni
ENSGALG00000031512	PAN2	99	84.987	ENSHGLG00000005647	PAN2	99	84.987	Heterocephalus_glaber_female
ENSGALG00000031512	PAN2	99	84.737	ENSHGLG00100014057	PAN2	99	84.737	Heterocephalus_glaber_male
ENSGALG00000031512	PAN2	100	77.107	ENSHCOG00000007920	pan2	99	77.107	Hippocampus_comes
ENSGALG00000031512	PAN2	100	78.441	ENSIPUG00000011065	PAN2	99	78.745	Ictalurus_punctatus
ENSGALG00000031512	PAN2	94	84.177	ENSSTOG00000015974	PAN2	100	84.177	Ictidomys_tridecemlineatus
ENSGALG00000031512	PAN2	99	85.247	ENSJJAG00000013044	Pan2	97	85.247	Jaculus_jaculus
ENSGALG00000031512	PAN2	100	77.686	ENSKMAG00000006192	pan2	99	78.112	Kryptolebias_marmoratus
ENSGALG00000031512	PAN2	99	74.477	ENSLBEG00000015763	pan2	99	74.812	Labrus_bergylta
ENSGALG00000031512	PAN2	100	75.566	ENSLACG00000018694	PAN2	100	75.647	Latimeria_chalumnae
ENSGALG00000031512	PAN2	100	79.373	ENSLOCG00000004333	pan2	99	79.933	Lepisosteus_oculatus
ENSGALG00000031512	PAN2	100	83.679	ENSLAFG00000014873	PAN2	100	83.679	Loxodonta_africana
ENSGALG00000031512	PAN2	100	85.595	ENSMFAG00000002293	PAN2	99	87.601	Macaca_fascicularis
ENSGALG00000031512	PAN2	100	85.595	ENSMMUG00000013482	PAN2	100	85.595	Macaca_mulatta
ENSGALG00000031512	PAN2	100	85.762	ENSMNEG00000033264	PAN2	99	87.601	Macaca_nemestrina
ENSGALG00000031512	PAN2	100	85.762	ENSMLEG00000037388	PAN2	99	87.601	Mandrillus_leucophaeus
ENSGALG00000031512	PAN2	100	78.318	ENSMAMG00000001624	pan2	100	78.318	Mastacembelus_armatus
ENSGALG00000031512	PAN2	98	62.988	ENSMZEG00005026472	pan2	98	62.903	Maylandia_zebra
ENSGALG00000031512	PAN2	100	77.723	ENSMZEG00005026462	pan2	99	78.055	Maylandia_zebra
ENSGALG00000031512	PAN2	97	99.654	ENSMGAG00000001439	PAN2	100	99.654	Meleagris_gallopavo
ENSGALG00000031512	PAN2	99	84.808	ENSMAUG00000012602	Pan2	99	84.975	Mesocricetus_auratus
ENSGALG00000031512	PAN2	100	85.845	ENSMICG00000017661	PAN2	100	85.845	Microcebus_murinus
ENSGALG00000031512	PAN2	100	84.596	ENSMOCG00000007191	Pan2	100	84.596	Microtus_ochrogaster
ENSGALG00000031512	PAN2	99	77.778	ENSMMOG00000009313	pan2	98	77.982	Mola_mola
ENSGALG00000031512	PAN2	100	77.942	ENSMALG00000013377	pan2	100	77.942	Monopterus_albus
ENSGALG00000031512	PAN2	100	84.272	MGP_CAROLIEiJ_G0015930	Pan2	100	84.272	Mus_caroli
ENSGALG00000031512	PAN2	100	84.904	ENSMUSG00000005682	Pan2	100	84.904	Mus_musculus
ENSGALG00000031512	PAN2	100	84.106	MGP_PahariEiJ_G0031154	Pan2	100	84.106	Mus_pahari
ENSGALG00000031512	PAN2	100	84.821	MGP_SPRETEiJ_G0016755	Pan2	100	84.821	Mus_spretus
ENSGALG00000031512	PAN2	100	85.762	ENSMPUG00000001383	PAN2	100	85.762	Mustela_putorius_furo
ENSGALG00000031512	PAN2	100	85.179	ENSMLUG00000006737	PAN2	100	85.179	Myotis_lucifugus
ENSGALG00000031512	PAN2	100	85.204	ENSNGAG00000007930	Pan2	100	85.204	Nannospalax_galili
ENSGALG00000031512	PAN2	90	87.727	ENSNBRG00000006585	pan2	97	91.045	Neolamprologus_brichardi
ENSGALG00000031512	PAN2	100	79.867	ENSNLEG00000017499	PAN2	99	87.062	Nomascus_leucogenys
ENSGALG00000031512	PAN2	100	87.854	ENSMEUG00000010125	PAN2	100	87.854	Notamacropus_eugenii
ENSGALG00000031512	PAN2	100	84.245	ENSOPRG00000001468	PAN2	100	84.245	Ochotona_princeps
ENSGALG00000031512	PAN2	100	84.971	ENSODEG00000007203	PAN2	100	84.971	Octodon_degus
ENSGALG00000031512	PAN2	100	76.816	ENSONIG00000016732	pan2	100	76.816	Oreochromis_niloticus
ENSGALG00000031512	PAN2	81	74.522	ENSOANG00000005151	PAN2	99	74.723	Ornithorhynchus_anatinus
ENSGALG00000031512	PAN2	100	84.450	ENSOCUG00000007227	PAN2	100	84.450	Oryctolagus_cuniculus
ENSGALG00000031512	PAN2	100	76.815	ENSORLG00000015195	pan2	100	76.815	Oryzias_latipes
ENSGALG00000031512	PAN2	100	76.733	ENSORLG00020000277	pan2	100	76.733	Oryzias_latipes_hni
ENSGALG00000031512	PAN2	100	76.815	ENSORLG00015005193	pan2	100	76.815	Oryzias_latipes_hsok
ENSGALG00000031512	PAN2	100	77.063	ENSOMEG00000022087	pan2	100	77.063	Oryzias_melastigma
ENSGALG00000031512	PAN2	100	84.558	ENSOGAG00000030620	PAN2	100	84.558	Otolemur_garnettii
ENSGALG00000031512	PAN2	100	85.702	ENSOARG00000009379	PAN2	100	85.702	Ovis_aries
ENSGALG00000031512	PAN2	100	85.595	ENSPPAG00000001208	PAN2	99	87.601	Pan_paniscus
ENSGALG00000031512	PAN2	100	85.370	ENSPPRG00000021586	PAN2	100	85.370	Panthera_pardus
ENSGALG00000031512	PAN2	100	82.149	ENSPTIG00000012494	PAN2	100	82.149	Panthera_tigris_altaica
ENSGALG00000031512	PAN2	100	85.595	ENSPTRG00000052054	PAN2	99	87.601	Pan_troglodytes
ENSGALG00000031512	PAN2	92	85.843	ENSPANG00000018906	PAN2	99	87.601	Papio_anubis
ENSGALG00000031512	PAN2	100	77.438	ENSPKIG00000003973	pan2	99	77.731	Paramormyrops_kingsleyae
ENSGALG00000031512	PAN2	100	89.223	ENSPSIG00000003267	PAN2	100	89.223	Pelodiscus_sinensis
ENSGALG00000031512	PAN2	100	77.280	ENSPMGG00000023186	pan2	100	77.280	Periophthalmus_magnuspinnatus
ENSGALG00000031512	PAN2	100	84.050	ENSPEMG00000018505	Pan2	100	84.050	Peromyscus_maniculatus_bairdii
ENSGALG00000031512	PAN2	91	70.320	ENSPMAG00000004731	pan2	100	70.320	Petromyzon_marinus
ENSGALG00000031512	PAN2	100	88.500	ENSPCIG00000024643	PAN2	100	88.500	Phascolarctos_cinereus
ENSGALG00000031512	PAN2	100	77.209	ENSPFOG00000008392	pan2	99	77.741	Poecilia_formosa
ENSGALG00000031512	PAN2	100	77.126	ENSPLAG00000009198	pan2	99	77.657	Poecilia_latipinna
ENSGALG00000031512	PAN2	100	77.363	ENSPMEG00000001484	pan2	100	77.363	Poecilia_mexicana
ENSGALG00000031512	PAN2	100	77.427	ENSPREG00000000900	pan2	100	77.427	Poecilia_reticulata
ENSGALG00000031512	PAN2	89	88.180	ENSPPYG00000004656	PAN2	100	88.180	Pongo_abelii
ENSGALG00000031512	PAN2	92	85.262	ENSPCAG00000011047	PAN2	99	85.519	Procavia_capensis
ENSGALG00000031512	PAN2	100	85.762	ENSPCOG00000018263	PAN2	100	85.762	Propithecus_coquereli
ENSGALG00000031512	PAN2	94	84.000	ENSPVAG00000007591	PAN2	94	84.000	Pteropus_vampyrus
ENSGALG00000031512	PAN2	99	78.028	ENSPNYG00000002629	pan2	99	78.138	Pundamilia_nyererei
ENSGALG00000031512	PAN2	100	78.773	ENSPNAG00000027140	pan2	99	79.079	Pygocentrus_nattereri
ENSGALG00000031512	PAN2	100	84.737	ENSRNOG00000032441	Pan2	100	84.737	Rattus_norvegicus
ENSGALG00000031512	PAN2	100	85.679	ENSRBIG00000029591	PAN2	99	87.062	Rhinopithecus_bieti
ENSGALG00000031512	PAN2	100	85.595	ENSRROG00000041950	PAN2	99	87.062	Rhinopithecus_roxellana
ENSGALG00000031512	PAN2	100	85.595	ENSSBOG00000027343	PAN2	99	87.131	Saimiri_boliviensis_boliviensis
ENSGALG00000031512	PAN2	92	87.377	ENSSHAG00000000122	PAN2	100	88.501	Sarcophilus_harrisii
ENSGALG00000031512	PAN2	99	78.542	ENSSFOG00015017740	pan2	99	78.684	Scleropages_formosus
ENSGALG00000031512	PAN2	100	76.261	ENSSMAG00000020901	pan2	100	76.261	Scophthalmus_maximus
ENSGALG00000031512	PAN2	100	77.595	ENSSDUG00000001840	pan2	99	78.073	Seriola_dumerili
ENSGALG00000031512	PAN2	100	77.539	ENSSLDG00000013866	pan2	100	77.769	Seriola_lalandi_dorsalis
ENSGALG00000031512	PAN2	92	85.297	ENSSARG00000013350	PAN2	92	85.297	Sorex_araneus
ENSGALG00000031512	PAN2	92	91.659	ENSSPUG00000004270	PAN2	99	91.750	Sphenodon_punctatus
ENSGALG00000031512	PAN2	100	77.329	ENSSPAG00000019970	pan2	100	77.310	Stegastes_partitus
ENSGALG00000031512	PAN2	100	85.346	ENSSSCG00000000393	PAN2	100	85.346	Sus_scrofa
ENSGALG00000031512	PAN2	100	78.007	ENSTRUG00000014260	pan2	99	78.221	Takifugu_rubripes
ENSGALG00000031512	PAN2	100	77.228	ENSTNIG00000012537	pan2	99	77.787	Tetraodon_nigroviridis
ENSGALG00000031512	PAN2	80	84.332	ENSTTRG00000007150	PAN2	80	84.332	Tursiops_truncatus
ENSGALG00000031512	PAN2	100	85.465	ENSUAMG00000026522	PAN2	100	85.465	Ursus_americanus
ENSGALG00000031512	PAN2	100	85.124	ENSUMAG00000017020	PAN2	100	85.124	Ursus_maritimus
ENSGALG00000031512	PAN2	79	94.089	ENSVPAG00000007309	PAN2	85	94.089	Vicugna_pacos
ENSGALG00000031512	PAN2	100	85.679	ENSVVUG00000021878	PAN2	100	85.679	Vulpes_vulpes
ENSGALG00000031512	PAN2	99	82.363	ENSXETG00000009434	pan2	100	82.995	Xenopus_tropicalis
ENSGALG00000031512	PAN2	100	73.715	ENSXCOG00000014391	pan2	100	73.715	Xiphophorus_couchianus
ENSGALG00000031512	PAN2	100	77.723	ENSXMAG00000011661	pan2	99	78.261	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000175	3'-5'-exoribonuclease activity	-	ISS	Function
GO:0000289	nuclear-transcribed mRNA poly(A) tail shortening	21873635.	IBA	Process
GO:0000932	P-body	21873635.	IBA	Component
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0004535	poly(A)-specific ribonuclease activity	21873635.	IBA	Function
GO:0004535	poly(A)-specific ribonuclease activity	-	ISS	Function
GO:0005634	nucleus	-	IEA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0010606	positive regulation of cytoplasmic mRNA processing body assembly	-	IEA	Process
GO:0031251	PAN complex	21873635.	IBA	Component
GO:0031251	PAN complex	-	ISS	Component
GO:0046872	metal ion binding	-	IEA	Function
GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic	-	IEA	Process