EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSGALG00000035421 (Gene tree)
Gene ID: 395298
Gene Symbol: SNRPN
Alias: SNRB'|SNRPB|SNRPB'|SNRPL
Full Name: Gallus gallus small nuclear ribonucleoprotein polypeptide N (SNRPN)%2C mRNA.
Gene Type: protein_coding
Species: Gallus_gallus
Status: putative
Strand: Plus strand
Length: 2806 bases
Position: chr20:10750391-10753196
Accession: NM_204599
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGALP00000046899	LSM	PF01423.22	5.9e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGALT00000063653	-	991	-	ENSGALP00000046899	240 (aa)	-	Q9PV94

Gene Model

Click here to download ENSGALG00000035421's gene model file

Pathways

Pathway ID	Pathway Name	Source
gga03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSGALG00000035421's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGALG00000035421	SNRPN	100	96.250	ENSG00000125835	SNRPB	100	96.250	Homo_sapiens
ENSGALG00000035421	SNRPN	74	94.350	ENSAPOG00000019606	snrpb	56	96.429	Acanthochromis_polyacanthus
ENSGALG00000035421	SNRPN	99	96.234	ENSAMEG00000011353	SNRPB	98	96.234	Ailuropoda_melanoleuca
ENSGALG00000035421	SNRPN	71	94.152	ENSACIG00000014480	snrpb	71	96.296	Amphilophus_citrinellus
ENSGALG00000035421	SNRPN	74	94.350	ENSAOCG00000006876	snrpb	69	96.429	Amphiprion_ocellaris
ENSGALG00000035421	SNRPN	74	94.350	ENSAPEG00000021585	snrpb	71	96.429	Amphiprion_percula
ENSGALG00000035421	SNRPN	74	93.785	ENSATEG00000009836	snrpb	69	95.833	Anabas_testudineus
ENSGALG00000035421	SNRPN	97	97.845	ENSACAG00000002053	SNRPB	100	97.845	Anolis_carolinensis
ENSGALG00000035421	SNRPN	96	88.745	ENSANAG00000036271	-	76	89.418	Aotus_nancymaae
ENSGALG00000035421	SNRPN	100	96.250	ENSANAG00000024443	-	100	96.250	Aotus_nancymaae
ENSGALG00000035421	SNRPN	74	94.350	ENSACLG00000014707	snrpb	69	96.429	Astatotilapia_calliptera
ENSGALG00000035421	SNRPN	76	93.443	ENSAMXG00000029434	snrpb	76	94.536	Astyanax_mexicanus
ENSGALG00000035421	SNRPN	92	95.475	ENSBTAG00000001038	SNRPB	78	95.556	Bos_taurus
ENSGALG00000035421	SNRPN	89	87.850	ENSCJAG00000023097	-	79	88.360	Callithrix_jacchus
ENSGALG00000035421	SNRPN	95	96.070	ENSCJAG00000020971	-	99	96.070	Callithrix_jacchus
ENSGALG00000035421	SNRPN	78	84.737	ENSCAFG00000031109	-	79	81.579	Canis_familiaris
ENSGALG00000035421	SNRPN	95	96.070	ENSCAFG00000006693	-	99	96.070	Canis_familiaris
ENSGALG00000035421	SNRPN	100	96.250	ENSCAFG00020016981	-	100	96.250	Canis_lupus_dingo
ENSGALG00000035421	SNRPN	92	95.475	ENSCHIG00000025449	-	78	95.556	Capra_hircus
ENSGALG00000035421	SNRPN	95	96.070	ENSTSYG00000014498	-	99	96.070	Carlito_syrichta
ENSGALG00000035421	SNRPN	97	72.414	ENSTSYG00000032303	-	66	70.492	Carlito_syrichta
ENSGALG00000035421	SNRPN	99	96.234	ENSCAPG00000012669	SNRPB	99	96.234	Cavia_aperea
ENSGALG00000035421	SNRPN	95	96.070	ENSCPOG00000039408	SNRPB	99	96.070	Cavia_porcellus
ENSGALG00000035421	SNRPN	53	84.252	ENSCCAG00000035140	-	89	84.314	Cebus_capucinus
ENSGALG00000035421	SNRPN	100	96.250	ENSCCAG00000026002	SNRPB	100	96.250	Cebus_capucinus
ENSGALG00000035421	SNRPN	95	96.070	ENSCATG00000030230	SNRPB	99	96.070	Cercocebus_atys
ENSGALG00000035421	SNRPN	100	95.000	ENSCLAG00000012442	SNRPB	100	95.000	Chinchilla_lanigera
ENSGALG00000035421	SNRPN	95	96.070	ENSCSAG00000010840	SNRPB	99	96.070	Chlorocebus_sabaeus
ENSGALG00000035421	SNRPN	100	99.583	ENSCPBG00000026801	SNRPB	100	99.583	Chrysemys_picta_bellii
ENSGALG00000035421	SNRPN	100	96.250	ENSCANG00000019461	SNRPB	100	96.250	Colobus_angolensis_palliatus
ENSGALG00000035421	SNRPN	95	96.070	ENSCGRG00001023046	Snrpb	99	96.070	Cricetulus_griseus_chok1gshd
ENSGALG00000035421	SNRPN	89	95.775	ENSCGRG00000010423	Snrpb	76	95.930	Cricetulus_griseus_crigri
ENSGALG00000035421	SNRPN	76	92.896	ENSCSEG00000020328	snrpb	70	96.429	Cynoglossus_semilaevis
ENSGALG00000035421	SNRPN	70	94.643	ENSDARG00000011125	snrpb	76	95.628	Danio_rerio
ENSGALG00000035421	SNRPN	100	96.250	ENSDNOG00000015545	-	100	96.250	Dasypus_novemcinctus
ENSGALG00000035421	SNRPN	92	91.403	ENSDNOG00000007896	-	91	91.403	Dasypus_novemcinctus
ENSGALG00000035421	SNRPN	90	95.349	ENSDORG00000029558	Snrpb	76	95.402	Dipodomys_ordii
ENSGALG00000035421	SNRPN	62	70.470	FBgn0262601	SmB	74	70.470	Drosophila_melanogaster
ENSGALG00000035421	SNRPN	76	76.503	ENSETEG00000006830	SNRPB	80	76.503	Echinops_telfairi
ENSGALG00000035421	SNRPN	75	80.645	ENSEBUG00000007467	SNRPB	62	89.933	Eptatretus_burgeri
ENSGALG00000035421	SNRPN	92	95.475	ENSEASG00005012991	SNRPB	78	95.556	Equus_asinus_asinus
ENSGALG00000035421	SNRPN	95	96.070	ENSECAG00000011944	SNRPB	99	96.070	Equus_caballus
ENSGALG00000035421	SNRPN	100	87.795	ENSEEUG00000015568	SNRPB	78	95.928	Erinaceus_europaeus
ENSGALG00000035421	SNRPN	100	95.833	ENSELUG00000014564	snrpb	100	95.833	Esox_lucius
ENSGALG00000035421	SNRPN	95	96.070	ENSFCAG00000034090	-	99	96.070	Felis_catus
ENSGALG00000035421	SNRPN	97	100.000	ENSFALG00000004866	SNRPB	100	100.000	Ficedula_albicollis
ENSGALG00000035421	SNRPN	99	96.234	ENSFDAG00000009937	SNRPB	99	96.070	Fukomys_damarensis
ENSGALG00000035421	SNRPN	72	94.186	ENSGAFG00000019558	snrpb	72	95.808	Gambusia_affinis
ENSGALG00000035421	SNRPN	76	92.350	ENSGACG00000003262	snrpb	70	96.429	Gasterosteus_aculeatus
ENSGALG00000035421	SNRPN	100	99.583	ENSGAGG00000001308	SNRPB	100	99.583	Gopherus_agassizii
ENSGALG00000035421	SNRPN	95	96.070	ENSGGOG00000016138	SNRPB	99	96.070	Gorilla_gorilla
ENSGALG00000035421	SNRPN	74	94.350	ENSHBUG00000008369	snrpb	69	96.429	Haplochromis_burtoni
ENSGALG00000035421	SNRPN	95	96.070	ENSHGLG00000016241	-	99	96.070	Heterocephalus_glaber_female
ENSGALG00000035421	SNRPN	63	86.667	ENSHGLG00000016505	-	72	86.667	Heterocephalus_glaber_female
ENSGALG00000035421	SNRPN	100	96.250	ENSHGLG00100012877	-	100	96.250	Heterocephalus_glaber_male
ENSGALG00000035421	SNRPN	63	86.667	ENSHGLG00100004178	-	72	86.667	Heterocephalus_glaber_male
ENSGALG00000035421	SNRPN	76	92.896	ENSHCOG00000014888	snrpb	70	96.429	Hippocampus_comes
ENSGALG00000035421	SNRPN	70	94.643	ENSIPUG00000024569	SNRPB	76	95.628	Ictalurus_punctatus
ENSGALG00000035421	SNRPN	92	94.118	ENSSTOG00000033664	-	92	94.118	Ictidomys_tridecemlineatus
ENSGALG00000035421	SNRPN	90	79.167	ENSSTOG00000027821	-	62	95.588	Ictidomys_tridecemlineatus
ENSGALG00000035421	SNRPN	95	96.070	ENSJJAG00000024170	Snrpb	99	96.070	Jaculus_jaculus
ENSGALG00000035421	SNRPN	72	95.376	ENSKMAG00000014494	snrpb	68	97.024	Kryptolebias_marmoratus
ENSGALG00000035421	SNRPN	76	92.896	ENSLBEG00000005678	snrpb	70	96.429	Labrus_bergylta
ENSGALG00000035421	SNRPN	92	95.023	ENSLACG00000011459	SNRPB	92	95.023	Latimeria_chalumnae
ENSGALG00000035421	SNRPN	100	97.083	ENSLOCG00000002687	snrpb	100	97.083	Lepisosteus_oculatus
ENSGALG00000035421	SNRPN	92	91.818	ENSLAFG00000017588	SNRPB	77	91.061	Loxodonta_africana
ENSGALG00000035421	SNRPN	95	96.070	ENSMFAG00000038756	SNRPB	99	96.070	Macaca_fascicularis
ENSGALG00000035421	SNRPN	95	96.070	ENSMMUG00000010050	SNRPB	99	96.070	Macaca_mulatta
ENSGALG00000035421	SNRPN	95	96.070	ENSMNEG00000027954	SNRPB	99	96.070	Macaca_nemestrina
ENSGALG00000035421	SNRPN	100	96.250	ENSMLEG00000022346	SNRPB	100	96.250	Mandrillus_leucophaeus
ENSGALG00000035421	SNRPN	73	94.318	ENSMAMG00000009294	snrpb	67	96.407	Mastacembelus_armatus
ENSGALG00000035421	SNRPN	74	94.350	ENSMZEG00005011856	snrpb	69	96.429	Maylandia_zebra
ENSGALG00000035421	SNRPN	94	81.778	ENSMICG00000015983	-	87	86.243	Microcebus_murinus
ENSGALG00000035421	SNRPN	92	95.475	ENSMICG00000016519	SNRPB	78	95.556	Microcebus_murinus
ENSGALG00000035421	SNRPN	92	95.475	ENSMOCG00000002892	-	78	95.556	Microtus_ochrogaster
ENSGALG00000035421	SNRPN	82	77.551	ENSMOCG00000021362	-	83	72.449	Microtus_ochrogaster
ENSGALG00000035421	SNRPN	76	92.857	ENSMMOG00000013226	snrpb	71	96.407	Mola_mola
ENSGALG00000035421	SNRPN	74	93.785	ENSMALG00000020839	snrpb	56	95.833	Monopterus_albus
ENSGALG00000035421	SNRPN	95	96.070	MGP_CAROLIEiJ_G0024293	Snrpb	99	96.070	Mus_caroli
ENSGALG00000035421	SNRPN	95	96.070	ENSMUSG00000027404	Snrpb	99	96.070	Mus_musculus
ENSGALG00000035421	SNRPN	95	96.070	MGP_PahariEiJ_G0025738	Snrpb	99	96.070	Mus_pahari
ENSGALG00000035421	SNRPN	95	96.070	MGP_SPRETEiJ_G0025213	Snrpb	99	96.070	Mus_spretus
ENSGALG00000035421	SNRPN	95	96.070	ENSMPUG00000009283	SNRPB	99	96.070	Mustela_putorius_furo
ENSGALG00000035421	SNRPN	92	92.760	ENSMLUG00000016951	SNRPB	92	92.760	Myotis_lucifugus
ENSGALG00000035421	SNRPN	95	96.070	ENSNGAG00000012051	Snrpb	99	96.070	Nannospalax_galili
ENSGALG00000035421	SNRPN	74	91.525	ENSNBRG00000006353	snrpb	62	95.122	Neolamprologus_brichardi
ENSGALG00000035421	SNRPN	100	96.250	ENSNLEG00000029067	SNRPB	100	96.250	Nomascus_leucogenys
ENSGALG00000035421	SNRPN	92	95.909	ENSMEUG00000015625	SNRPB	82	96.216	Notamacropus_eugenii
ENSGALG00000035421	SNRPN	79	91.534	ENSODEG00000016060	-	79	92.593	Octodon_degus
ENSGALG00000035421	SNRPN	99	92.887	ENSODEG00000004305	-	99	96.070	Octodon_degus
ENSGALG00000035421	SNRPN	74	94.350	ENSONIG00000000248	snrpb	69	96.429	Oreochromis_niloticus
ENSGALG00000035421	SNRPN	95	92.952	ENSOCUG00000028215	-	95	92.952	Oryctolagus_cuniculus
ENSGALG00000035421	SNRPN	89	68.545	ENSOCUG00000026813	-	63	67.568	Oryctolagus_cuniculus
ENSGALG00000035421	SNRPN	90	90.698	ENSOCUG00000021456	-	78	92.063	Oryctolagus_cuniculus
ENSGALG00000035421	SNRPN	75	89.444	ENSOCUG00000022423	-	86	93.452	Oryctolagus_cuniculus
ENSGALG00000035421	SNRPN	92	95.475	ENSOCUG00000014042	-	92	95.475	Oryctolagus_cuniculus
ENSGALG00000035421	SNRPN	75	93.370	ENSORLG00000021862	snrpb	69	96.429	Oryzias_latipes
ENSGALG00000035421	SNRPN	100	96.250	ENSOGAG00000016149	SNRPB	100	96.250	Otolemur_garnettii
ENSGALG00000035421	SNRPN	92	95.475	ENSOARG00000006740	SNRPB	78	95.556	Ovis_aries
ENSGALG00000035421	SNRPN	95	96.070	ENSPPAG00000036314	SNRPB	99	96.070	Pan_paniscus
ENSGALG00000035421	SNRPN	100	96.250	ENSPPRG00000003233	-	100	96.250	Panthera_pardus
ENSGALG00000035421	SNRPN	99	96.234	ENSPTIG00000007468	SNRPB	99	96.234	Panthera_tigris_altaica
ENSGALG00000035421	SNRPN	95	96.070	ENSPTRG00000013176	SNRPB	99	96.070	Pan_troglodytes
ENSGALG00000035421	SNRPN	100	96.250	ENSPANG00000020362	SNRPB	100	96.250	Papio_anubis
ENSGALG00000035421	SNRPN	70	94.048	ENSPKIG00000002865	snrpb	76	94.536	Paramormyrops_kingsleyae
ENSGALG00000035421	SNRPN	99	99.582	ENSPSIG00000014125	SNRPB	98	99.582	Pelodiscus_sinensis
ENSGALG00000035421	SNRPN	74	91.011	ENSPMGG00000016349	snrpb	69	93.865	Periophthalmus_magnuspinnatus
ENSGALG00000035421	SNRPN	95	96.070	ENSPEMG00000007948	Snrpb	99	96.070	Peromyscus_maniculatus_bairdii
ENSGALG00000035421	SNRPN	99	96.234	ENSPCIG00000004694	SNRPB	99	96.234	Phascolarctos_cinereus
ENSGALG00000035421	SNRPN	62	97.987	ENSPFOG00000011802	snrpb	63	97.987	Poecilia_formosa
ENSGALG00000035421	SNRPN	95	96.070	ENSPPYG00000010841	SNRPB	99	96.070	Pongo_abelii
ENSGALG00000035421	SNRPN	95	96.070	ENSPCOG00000013686	SNRPB	99	96.070	Propithecus_coquereli
ENSGALG00000035421	SNRPN	92	95.023	ENSPVAG00000017013	SNRPB	63	95.000	Pteropus_vampyrus
ENSGALG00000035421	SNRPN	74	94.350	ENSPNYG00000014788	snrpb	69	96.429	Pundamilia_nyererei
ENSGALG00000035421	SNRPN	76	93.443	ENSPNAG00000016126	snrpb	76	95.082	Pygocentrus_nattereri
ENSGALG00000035421	SNRPN	95	96.070	ENSRNOG00000006961	Snrpb	99	96.070	Rattus_norvegicus
ENSGALG00000035421	SNRPN	70	97.024	ENSRBIG00000040505	SNRPB	73	97.024	Rhinopithecus_bieti
ENSGALG00000035421	SNRPN	100	96.250	ENSRROG00000036094	SNRPB	100	96.250	Rhinopithecus_roxellana
ENSGALG00000035421	SNRPN	100	96.250	ENSSBOG00000027310	SNRPB	100	96.250	Saimiri_boliviensis_boliviensis
ENSGALG00000035421	SNRPN	100	97.083	ENSSHAG00000010394	SNRPB	100	97.083	Sarcophilus_harrisii
ENSGALG00000035421	SNRPN	70	94.048	ENSSFOG00015002870	snrpb	76	94.536	Scleropages_formosus
ENSGALG00000035421	SNRPN	99	95.378	ENSSMAG00000006766	snrpb	99	95.378	Scophthalmus_maximus
ENSGALG00000035421	SNRPN	74	94.350	ENSSDUG00000018539	snrpb	69	96.429	Seriola_dumerili
ENSGALG00000035421	SNRPN	74	94.350	ENSSLDG00000022391	snrpb	69	96.429	Seriola_lalandi_dorsalis
ENSGALG00000035421	SNRPN	92	84.091	ENSSARG00000003084	SNRPB	76	81.564	Sorex_araneus
ENSGALG00000035421	SNRPN	99	99.582	ENSSPUG00000015659	SNRPB	100	99.582	Sphenodon_punctatus
ENSGALG00000035421	SNRPN	74	94.350	ENSSPAG00000021992	snrpb	69	96.429	Stegastes_partitus
ENSGALG00000035421	SNRPN	95	76.419	ENSSSCG00000011966	-	78	71.505	Sus_scrofa
ENSGALG00000035421	SNRPN	92	95.475	ENSSSCG00000040857	-	78	95.556	Sus_scrofa
ENSGALG00000035421	SNRPN	74	81.921	ENSTGUG00000005684	SNRPB	59	99.286	Taeniopygia_guttata
ENSGALG00000035421	SNRPN	95	95.197	ENSTRUG00000023094	snrpb	99	95.197	Takifugu_rubripes
ENSGALG00000035421	SNRPN	99	95.378	ENSTNIG00000002991	snrpb	99	95.378	Tetraodon_nigroviridis
ENSGALG00000035421	SNRPN	70	97.024	ENSUAMG00000005984	-	88	96.175	Ursus_americanus
ENSGALG00000035421	SNRPN	57	95.620	ENSUMAG00000002123	-	63	95.620	Ursus_maritimus
ENSGALG00000035421	SNRPN	92	95.475	ENSVVUG00000025654	-	92	95.475	Vulpes_vulpes
ENSGALG00000035421	SNRPN	100	73.333	ENSVVUG00000010086	-	85	78.061	Vulpes_vulpes
ENSGALG00000035421	SNRPN	100	95.417	ENSXETG00000027266	snrpb	100	95.417	Xenopus_tropicalis
ENSGALG00000035421	SNRPN	71	80.702	ENSXMAG00000028767	snrpb	58	97.778	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000387	spliceosomal snRNP assembly	-	ISS	Process
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISS	Process
GO:0005634	nucleus	-	ISS	Component
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005682	U5 snRNP	21873635.	IBA	Component
GO:0005683	U7 snRNP	-	IEA	Component
GO:0005685	U1 snRNP	21873635.	IBA	Component
GO:0005685	U1 snRNP	-	ISS	Component
GO:0005686	U2 snRNP	21873635.	IBA	Component
GO:0005687	U4 snRNP	21873635.	IBA	Component
GO:0005687	U4 snRNP	-	ISS	Component
GO:0005689	U12-type spliceosomal complex	-	IEA	Component
GO:0005697	telomerase holoenzyme complex	-	IEA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005829	cytosol	-	ISS	Component
GO:0006479	protein methylation	-	IEA	Process
GO:0034709	methylosome	-	ISS	Component
GO:0034719	SMN-Sm protein complex	-	ISS	Component
GO:0046540	U4/U6 x U5 tri-snRNP complex	21873635.	IBA	Component
GO:0046540	U4/U6 x U5 tri-snRNP complex	-	ISS	Component
GO:0070034	telomerase RNA binding	-	IEA	Function
GO:0071004	U2-type prespliceosome	21873635.	IBA	Component
GO:0071005	U2-type precatalytic spliceosome	-	ISS	Component
GO:0071007	U2-type catalytic step 2 spliceosome	-	ISS	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component
GO:0071204	histone pre-mRNA 3'end processing complex	-	IEA	Component
GO:0071208	histone pre-mRNA DCP binding	-	IEA	Function