EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGALG00000035604 (Gene tree)
Gene ID: 415628
Gene Symbol: USB1
Alias: C16orf57|FLJ13154|HVSL1|Mpn1
Full Name: U6 snRNA biogenesis 1
Gene Type: protein_coding
Species: Gallus_gallus
Status: putative
Strand: Minus strand
Length: 4724 bases
Position: chr11:449045-453768
Accession: 415628
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGALP00000046827	HVSL	PF09749.9	4.6e-65	1	1
ENSGALP00000063619	HVSL	PF09749.9	5.7e-58	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGALT00000083195	USB1-201	2100	-	ENSGALP00000063619	398 (aa)	XP_025010043	A0A1D5P2D2
ENSGALT00000057024	USB1-202	1126	XM_015292318	ENSGALP00000046827	255 (aa)	XP_015147804	A0A1D5P2D2

Gene Model

Click here to download ENSGALG00000035604's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGALG00000035604's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGALG00000035604	USB1	89	66.814	ENSG00000103005	USB1	95	69.608	Homo_sapiens
ENSGALG00000035604	USB1	98	49.462	ENSAPOG00000011942	usb1	79	56.054	Acanthochromis_polyacanthus
ENSGALG00000035604	USB1	100	62.593	ENSAMEG00000017205	USB1	83	66.964	Ailuropoda_melanoleuca
ENSGALG00000035604	USB1	90	56.332	ENSACIG00000012234	usb1	82	56.502	Amphilophus_citrinellus
ENSGALG00000035604	USB1	98	49.822	ENSAOCG00000014831	usb1	89	51.984	Amphiprion_ocellaris
ENSGALG00000035604	USB1	98	50.178	ENSAPEG00000000296	usb1	89	52.381	Amphiprion_percula
ENSGALG00000035604	USB1	94	50.800	ENSATEG00000009348	usb1	79	54.464	Anabas_testudineus
ENSGALG00000035604	USB1	88	84.513	ENSAPLG00000002756	USB1	99	84.444	Anas_platyrhynchos
ENSGALG00000035604	USB1	88	66.814	ENSACAG00000015481	USB1	98	66.667	Anolis_carolinensis
ENSGALG00000035604	USB1	100	62.406	ENSANAG00000035640	USB1	84	66.518	Aotus_nancymaae
ENSGALG00000035604	USB1	93	53.814	ENSACLG00000020586	usb1	79	54.709	Astatotilapia_calliptera
ENSGALG00000035604	USB1	90	54.148	ENSAMXG00000040146	usb1	74	54.709	Astyanax_mexicanus
ENSGALG00000035604	USB1	100	63.910	ENSBTAG00000015758	USB1	84	67.857	Bos_taurus
ENSGALG00000035604	USB1	100	63.158	ENSCJAG00000011733	USB1	84	67.411	Callithrix_jacchus
ENSGALG00000035604	USB1	99	61.538	ENSCAFG00000008556	USB1	65	61.753	Canis_familiaris
ENSGALG00000035604	USB1	99	62.782	ENSCAFG00020009263	USB1	83	67.713	Canis_lupus_dingo
ENSGALG00000035604	USB1	100	63.158	ENSCHIG00000024290	USB1	84	66.964	Capra_hircus
ENSGALG00000035604	USB1	91	67.532	ENSTSYG00000006997	USB1	84	68.750	Carlito_syrichta
ENSGALG00000035604	USB1	89	55.263	ENSCAPG00000009057	USB1	95	55.804	Cavia_aperea
ENSGALG00000035604	USB1	99	62.172	ENSCPOG00000014325	USB1	83	67.411	Cavia_porcellus
ENSGALG00000035604	USB1	100	62.406	ENSCCAG00000022132	USB1	84	66.518	Cebus_capucinus
ENSGALG00000035604	USB1	100	63.534	ENSCATG00000032174	USB1	84	67.857	Cercocebus_atys
ENSGALG00000035604	USB1	69	68.182	ENSCLAG00000007363	USB1	91	70.186	Chinchilla_lanigera
ENSGALG00000035604	USB1	100	63.534	ENSCSAG00000004783	USB1	84	67.857	Chlorocebus_sabaeus
ENSGALG00000035604	USB1	88	76.889	ENSCPBG00000026943	USB1	80	76.786	Chrysemys_picta_bellii
ENSGALG00000035604	USB1	100	63.396	ENSCANG00000037135	USB1	84	68.304	Colobus_angolensis_palliatus
ENSGALG00000035604	USB1	100	62.825	ENSCGRG00001011243	USB1	83	66.071	Cricetulus_griseus_chok1gshd
ENSGALG00000035604	USB1	100	62.825	ENSCGRG00000013252	USB1	83	66.071	Cricetulus_griseus_crigri
ENSGALG00000035604	USB1	98	47.445	ENSCSEG00000013881	usb1	80	52.018	Cynoglossus_semilaevis
ENSGALG00000035604	USB1	88	51.316	ENSCVAG00000009252	usb1	97	51.101	Cyprinodon_variegatus
ENSGALG00000035604	USB1	88	52.444	ENSDARG00000003841	usb1	81	52.232	Danio_rerio
ENSGALG00000035604	USB1	99	61.597	ENSDORG00000001888	Usb1	84	65.625	Dipodomys_ordii
ENSGALG00000035604	USB1	80	36.098	FBgn0037713	CG16790	78	35.610	Drosophila_melanogaster
ENSGALG00000035604	USB1	100	53.358	ENSETEG00000019682	USB1	84	55.357	Echinops_telfairi
ENSGALG00000035604	USB1	87	48.879	ENSEBUG00000005889	usb1	78	48.879	Eptatretus_burgeri
ENSGALG00000035604	USB1	100	66.541	ENSEASG00005005484	USB1	84	69.196	Equus_asinus_asinus
ENSGALG00000035604	USB1	100	66.541	ENSECAG00000019493	USB1	77	69.507	Equus_caballus
ENSGALG00000035604	USB1	69	61.932	ENSEEUG00000000154	USB1	61	62.112	Erinaceus_europaeus
ENSGALG00000035604	USB1	88	52.000	ENSELUG00000010974	usb1	82	51.786	Esox_lucius
ENSGALG00000035604	USB1	100	63.806	ENSFCAG00000002693	USB1	84	68.304	Felis_catus
ENSGALG00000035604	USB1	100	72.659	ENSFALG00000006876	USB1	77	83.333	Ficedula_albicollis
ENSGALG00000035604	USB1	100	62.687	ENSFDAG00000010052	USB1	84	66.964	Fukomys_damarensis
ENSGALG00000035604	USB1	85	50.826	ENSFHEG00000012334	usb1	78	55.612	Fundulus_heteroclitus
ENSGALG00000035604	USB1	88	53.571	ENSGMOG00000004228	usb1	99	53.571	Gadus_morhua
ENSGALG00000035604	USB1	98	49.091	ENSGAFG00000021890	usb1	81	54.018	Gambusia_affinis
ENSGALG00000035604	USB1	88	54.464	ENSGACG00000003257	usb1	80	54.260	Gasterosteus_aculeatus
ENSGALG00000035604	USB1	99	68.635	ENSGAGG00000022572	USB1	82	75.893	Gopherus_agassizii
ENSGALG00000035604	USB1	89	66.372	ENSGGOG00000017147	USB1	84	66.518	Gorilla_gorilla
ENSGALG00000035604	USB1	88	55.357	ENSHBUG00000009823	usb1	79	55.157	Haplochromis_burtoni
ENSGALG00000035604	USB1	100	62.687	ENSHGLG00000016078	USB1	82	66.071	Heterocephalus_glaber_female
ENSGALG00000035604	USB1	100	62.687	ENSHGLG00100005562	USB1	82	66.071	Heterocephalus_glaber_male
ENSGALG00000035604	USB1	85	53.211	ENSHCOG00000015633	usb1	86	53.363	Hippocampus_comes
ENSGALG00000035604	USB1	88	55.111	ENSIPUG00000008601	usb1	77	54.911	Ictalurus_punctatus
ENSGALG00000035604	USB1	100	65.455	ENSSTOG00000007548	USB1	82	71.111	Ictidomys_tridecemlineatus
ENSGALG00000035604	USB1	99	63.534	ENSJJAG00000021859	Usb1	83	67.857	Jaculus_jaculus
ENSGALG00000035604	USB1	88	54.464	ENSKMAG00000007200	usb1	78	54.260	Kryptolebias_marmoratus
ENSGALG00000035604	USB1	78	54.726	ENSLBEG00000008452	usb1	64	54.974	Labrus_bergylta
ENSGALG00000035604	USB1	79	66.337	ENSLACG00000000105	USB1	66	69.271	Latimeria_chalumnae
ENSGALG00000035604	USB1	88	59.556	ENSLOCG00000000465	usb1	79	59.375	Lepisosteus_oculatus
ENSGALG00000035604	USB1	99	51.673	ENSLAFG00000002267	USB1	83	55.357	Loxodonta_africana
ENSGALG00000035604	USB1	100	63.534	ENSMFAG00000003926	USB1	84	67.857	Macaca_fascicularis
ENSGALG00000035604	USB1	100	63.534	ENSMMUG00000022669	USB1	84	67.857	Macaca_mulatta
ENSGALG00000035604	USB1	100	63.158	ENSMNEG00000042487	USB1	84	67.411	Macaca_nemestrina
ENSGALG00000035604	USB1	100	63.534	ENSMLEG00000028756	USB1	84	67.857	Mandrillus_leucophaeus
ENSGALG00000035604	USB1	98	49.458	ENSMAMG00000015092	usb1	79	55.605	Mastacembelus_armatus
ENSGALG00000035604	USB1	93	53.814	ENSMZEG00005010008	usb1	79	54.709	Maylandia_zebra
ENSGALG00000035604	USB1	100	62.313	ENSMAUG00000007832	Usb1	84	66.071	Mesocricetus_auratus
ENSGALG00000035604	USB1	89	68.282	ENSMICG00000004900	USB1	84	68.304	Microcebus_murinus
ENSGALG00000035604	USB1	99	61.887	ENSMOCG00000022647	Usb1	84	66.518	Microtus_ochrogaster
ENSGALG00000035604	USB1	93	54.237	ENSMMOG00000000490	usb1	86	54.911	Mola_mola
ENSGALG00000035604	USB1	99	62.921	ENSMODG00000014067	USB1	83	66.964	Monodelphis_domestica
ENSGALG00000035604	USB1	93	51.004	ENSMALG00000005930	usb1	78	54.709	Monopterus_albus
ENSGALG00000035604	USB1	99	62.030	MGP_CAROLIEiJ_G0031421	Usb1	91	66.019	Mus_caroli
ENSGALG00000035604	USB1	99	61.278	ENSMUSG00000031792	Usb1	100	61.404	Mus_musculus
ENSGALG00000035604	USB1	99	60.902	MGP_PahariEiJ_G0023019	Usb1	100	61.017	Mus_pahari
ENSGALG00000035604	USB1	99	61.278	MGP_SPRETEiJ_G0032540	Usb1	84	65.625	Mus_spretus
ENSGALG00000035604	USB1	100	63.333	ENSMPUG00000004684	USB1	80	67.411	Mustela_putorius_furo
ENSGALG00000035604	USB1	89	69.163	ENSMLUG00000007400	USB1	97	69.196	Myotis_lucifugus
ENSGALG00000035604	USB1	100	64.576	ENSNGAG00000009703	Usb1	83	68.444	Nannospalax_galili
ENSGALG00000035604	USB1	88	51.111	ENSNBRG00000008747	usb1	98	53.810	Neolamprologus_brichardi
ENSGALG00000035604	USB1	94	62.550	ENSNLEG00000003340	USB1	83	66.507	Nomascus_leucogenys
ENSGALG00000035604	USB1	63	67.647	ENSOPRG00000011803	USB1	69	67.647	Ochotona_princeps
ENSGALG00000035604	USB1	99	63.534	ENSODEG00000016214	USB1	83	67.411	Octodon_degus
ENSGALG00000035604	USB1	98	49.281	ENSONIG00000011063	usb1	79	56.054	Oreochromis_niloticus
ENSGALG00000035604	USB1	90	70.870	ENSOANG00000012118	USB1	94	71.875	Ornithorhynchus_anatinus
ENSGALG00000035604	USB1	88	54.464	ENSORLG00000012479	usb1	81	54.260	Oryzias_latipes
ENSGALG00000035604	USB1	88	54.464	ENSORLG00020018671	usb1	82	54.260	Oryzias_latipes_hni
ENSGALG00000035604	USB1	88	54.464	ENSORLG00015009679	usb1	82	54.260	Oryzias_latipes_hsok
ENSGALG00000035604	USB1	88	53.125	ENSOMEG00000012930	usb1	80	52.915	Oryzias_melastigma
ENSGALG00000035604	USB1	100	60.150	ENSOGAG00000003273	USB1	83	62.500	Otolemur_garnettii
ENSGALG00000035604	USB1	99	61.004	ENSOARG00000001107	USB1	85	67.411	Ovis_aries
ENSGALG00000035604	USB1	89	66.814	ENSPPAG00000042137	USB1	84	66.964	Pan_paniscus
ENSGALG00000035604	USB1	100	63.806	ENSPPRG00000024797	USB1	84	67.857	Panthera_pardus
ENSGALG00000035604	USB1	100	63.060	ENSPTIG00000007506	USB1	84	67.411	Panthera_tigris_altaica
ENSGALG00000035604	USB1	89	61.947	ENSPTRG00000008172	USB1	95	70.098	Pan_troglodytes
ENSGALG00000035604	USB1	100	63.534	ENSPANG00000025138	USB1	84	67.857	Papio_anubis
ENSGALG00000035604	USB1	96	52.988	ENSPKIG00000015109	usb1	75	56.951	Paramormyrops_kingsleyae
ENSGALG00000035604	USB1	88	59.912	ENSPSIG00000004305	USB1	99	59.735	Pelodiscus_sinensis
ENSGALG00000035604	USB1	89	54.867	ENSPMGG00000017725	usb1	85	54.709	Periophthalmus_magnuspinnatus
ENSGALG00000035604	USB1	100	60.440	ENSPEMG00000016183	Usb1	82	65.625	Peromyscus_maniculatus_bairdii
ENSGALG00000035604	USB1	88	53.070	ENSPMAG00000000462	usb1	95	52.000	Petromyzon_marinus
ENSGALG00000035604	USB1	98	48.921	ENSPFOG00000011130	usb1	90	50.996	Poecilia_formosa
ENSGALG00000035604	USB1	98	48.561	ENSPLAG00000009820	usb1	90	50.598	Poecilia_latipinna
ENSGALG00000035604	USB1	98	48.921	ENSPMEG00000006402	usb1	90	50.996	Poecilia_mexicana
ENSGALG00000035604	USB1	85	50.826	ENSPREG00000001047	usb1	98	51.653	Poecilia_reticulata
ENSGALG00000035604	USB1	83	62.441	ENSPPYG00000007401	USB1	83	62.559	Pongo_abelii
ENSGALG00000035604	USB1	100	63.910	ENSPCOG00000022612	USB1	84	67.857	Propithecus_coquereli
ENSGALG00000035604	USB1	100	62.692	ENSPVAG00000004613	USB1	86	65.179	Pteropus_vampyrus
ENSGALG00000035604	USB1	88	55.357	ENSPNYG00000022262	usb1	79	55.157	Pundamilia_nyererei
ENSGALG00000035604	USB1	98	50.602	ENSPNAG00000011736	usb1	76	54.018	Pygocentrus_nattereri
ENSGALG00000035604	USB1	99	61.278	ENSRNOG00000013216	Usb1	84	65.625	Rattus_norvegicus
ENSGALG00000035604	USB1	100	58.647	ENSRBIG00000044466	USB1	95	70.588	Rhinopithecus_bieti
ENSGALG00000035604	USB1	100	63.158	ENSRROG00000029211	USB1	84	67.857	Rhinopithecus_roxellana
ENSGALG00000035604	USB1	89	67.257	ENSSBOG00000029362	USB1	84	67.411	Saimiri_boliviensis_boliviensis
ENSGALG00000035604	USB1	86	64.091	ENSSHAG00000006993	USB1	88	64.286	Sarcophilus_harrisii
ENSGALG00000035604	USB1	98	53.815	ENSSFOG00015023663	usb1	70	57.399	Scleropages_formosus
ENSGALG00000035604	USB1	96	49.815	ENSSMAG00000015834	usb1	80	53.165	Scophthalmus_maximus
ENSGALG00000035604	USB1	89	58.407	ENSSDUG00000002949	usb1	82	58.296	Seriola_dumerili
ENSGALG00000035604	USB1	88	58.482	ENSSLDG00000014174	usb1	79	58.296	Seriola_lalandi_dorsalis
ENSGALG00000035604	USB1	84	71.163	ENSSPUG00000006741	USB1	100	71.163	Sphenodon_punctatus
ENSGALG00000035604	USB1	98	47.703	ENSSPAG00000007484	usb1	89	50.787	Stegastes_partitus
ENSGALG00000035604	USB1	99	63.060	ENSSSCG00000002807	USB1	83	68.750	Sus_scrofa
ENSGALG00000035604	USB1	83	83.412	ENSTGUG00000004792	USB1	80	85.784	Taeniopygia_guttata
ENSGALG00000035604	USB1	98	49.442	ENSTRUG00000021069	usb1	83	52.679	Takifugu_rubripes
ENSGALG00000035604	USB1	100	46.212	ENSTNIG00000000626	usb1	89	44.314	Tetraodon_nigroviridis
ENSGALG00000035604	USB1	89	46.460	ENSTBEG00000001507	USB1	96	46.429	Tupaia_belangeri
ENSGALG00000035604	USB1	100	62.963	ENSUAMG00000016823	USB1	83	67.411	Ursus_americanus
ENSGALG00000035604	USB1	84	67.442	ENSUMAG00000021369	USB1	100	67.442	Ursus_maritimus
ENSGALG00000035604	USB1	99	62.825	ENSVVUG00000023700	USB1	86	68.161	Vulpes_vulpes
ENSGALG00000035604	USB1	98	55.777	ENSXETG00000013795	usb1	89	58.744	Xenopus_tropicalis
ENSGALG00000035604	USB1	88	54.222	ENSXMAG00000024687	usb1	65	55.779	Xiphophorus_maculatus