EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSGALG00000039917 (Gene tree)
Gene ID: 423844
Gene Symbol: EXOSC1
Alias: CGI-108|CSL4|Csl4p|SKI4|Ski4p|hCsl4p|p13
Full Name: exosome component 1
Gene Type: protein_coding
Species: Gallus_gallus
Status: putative
Strand: Plus strand
Length: 1670 bases
Position: chr6:23305911-23307580
Accession: 17286
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGALP00000066302	EXOSC1	PF10447.9	3.3e-15	1	1
ENSGALP00000069869	EXOSC1	PF10447.9	2.6e-13	1	1
ENSGALP00000053676	EXOSC1	PF10447.9	3.6e-13	1	1
ENSGALP00000069869	ECR1_N	PF14382.6	2e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGALT00000106083	EXOSC1-201	513	-	ENSGALP00000069869	170 (aa)	-	UPI000B3DB038
ENSGALT00000106317	EXOSC1-202	562	-	ENSGALP00000066302	146 (aa)	-	-
ENSGALT00000076918	EXOSC1-203	569	-	ENSGALP00000053676	141 (aa)	-	A0A1D5PLG0

Gene Model

Click here to download ENSGALG00000039917's gene model file

Pathways

Pathway ID	Pathway Name	Source
gga03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSGALG00000039917's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGALG00000039917	EXOSC1	100	86.301	ENSG00000171311	EXOSC1	100	82.353	Homo_sapiens
ENSGALG00000039917	EXOSC1	99	84.828	ENSAPOG00000007822	exosc1	98	65.969	Acanthochromis_polyacanthus
ENSGALG00000039917	EXOSC1	100	86.301	ENSAMEG00000000129	EXOSC1	100	72.821	Ailuropoda_melanoleuca
ENSGALG00000039917	EXOSC1	99	83.448	ENSACIG00000018956	exosc1	92	64.894	Amphilophus_citrinellus
ENSGALG00000039917	EXOSC1	99	84.138	ENSAOCG00000010699	exosc1	98	65.969	Amphiprion_ocellaris
ENSGALG00000039917	EXOSC1	99	71.034	ENSAPEG00000012690	exosc1	96	55.866	Amphiprion_percula
ENSGALG00000039917	EXOSC1	99	84.138	ENSATEG00000018683	exosc1	98	65.969	Anabas_testudineus
ENSGALG00000039917	EXOSC1	100	89.041	ENSACAG00000002101	EXOSC1	99	73.575	Anolis_carolinensis
ENSGALG00000039917	EXOSC1	100	86.986	ENSANAG00000034669	EXOSC1	100	83.529	Aotus_nancymaae
ENSGALG00000039917	EXOSC1	99	84.138	ENSACLG00000021243	exosc1	98	65.969	Astatotilapia_calliptera
ENSGALG00000039917	EXOSC1	99	84.828	ENSAMXG00000011116	exosc1	98	69.110	Astyanax_mexicanus
ENSGALG00000039917	EXOSC1	100	86.301	ENSBTAG00000012699	EXOSC1	100	72.821	Bos_taurus
ENSGALG00000039917	EXOSC1	90	36.842	WBGene00012966	exos-1	63	36.842	Caenorhabditis_elegans
ENSGALG00000039917	EXOSC1	100	87.671	ENSCJAG00000016586	EXOSC1	100	84.118	Callithrix_jacchus
ENSGALG00000039917	EXOSC1	100	85.616	ENSCAFG00000009068	EXOSC1	94	72.821	Canis_familiaris
ENSGALG00000039917	EXOSC1	100	85.616	ENSCAFG00020006002	EXOSC1	94	72.821	Canis_lupus_dingo
ENSGALG00000039917	EXOSC1	100	86.301	ENSCHIG00000015253	EXOSC1	100	72.821	Capra_hircus
ENSGALG00000039917	EXOSC1	100	86.986	ENSTSYG00000000760	EXOSC1	100	82.353	Carlito_syrichta
ENSGALG00000039917	EXOSC1	100	86.986	ENSCPOG00000001173	EXOSC1	100	72.308	Cavia_porcellus
ENSGALG00000039917	EXOSC1	100	51.176	ENSCCAG00000023986	EXOSC1	100	51.176	Cebus_capucinus
ENSGALG00000039917	EXOSC1	100	86.301	ENSCATG00000034114	EXOSC1	100	82.353	Cercocebus_atys
ENSGALG00000039917	EXOSC1	100	86.986	ENSCLAG00000002463	EXOSC1	100	72.821	Chinchilla_lanigera
ENSGALG00000039917	EXOSC1	100	85.616	ENSCSAG00000005870	EXOSC1	100	71.282	Chlorocebus_sabaeus
ENSGALG00000039917	EXOSC1	80	87.611	ENSCHOG00000006477	EXOSC1	100	71.123	Choloepus_hoffmanni
ENSGALG00000039917	EXOSC1	99	54.861	ENSCING00000022734	-	89	49.198	Ciona_intestinalis
ENSGALG00000039917	EXOSC1	90	59.091	ENSCSAVG00000010865	-	95	52.406	Ciona_savignyi
ENSGALG00000039917	EXOSC1	100	86.301	ENSCANG00000034159	EXOSC1	100	82.353	Colobus_angolensis_palliatus
ENSGALG00000039917	EXOSC1	100	88.356	ENSCGRG00001000335	Exosc1	100	73.333	Cricetulus_griseus_chok1gshd
ENSGALG00000039917	EXOSC1	100	88.356	ENSCGRG00000011602	Exosc1	100	73.333	Cricetulus_griseus_crigri
ENSGALG00000039917	EXOSC1	98	74.096	ENSCSEG00000007895	exosc1	95	74.096	Cynoglossus_semilaevis
ENSGALG00000039917	EXOSC1	99	79.310	ENSCVAG00000016748	exosc1	98	62.304	Cyprinodon_variegatus
ENSGALG00000039917	EXOSC1	99	84.828	ENSDARG00000059841	exosc1	98	69.110	Danio_rerio
ENSGALG00000039917	EXOSC1	67	85.714	ENSDNOG00000007983	EXOSC1	100	66.892	Dasypus_novemcinctus
ENSGALG00000039917	EXOSC1	100	86.986	ENSDORG00000016528	Exosc1	100	72.821	Dipodomys_ordii
ENSGALG00000039917	EXOSC1	96	49.306	FBgn0032346	Csl4	92	43.158	Drosophila_melanogaster
ENSGALG00000039917	EXOSC1	100	87.671	ENSETEG00000002469	-	100	73.333	Echinops_telfairi
ENSGALG00000039917	EXOSC1	100	69.863	ENSEBUG00000008164	exosc1	98	58.163	Eptatretus_burgeri
ENSGALG00000039917	EXOSC1	96	80.714	ENSEASG00005008684	EXOSC1	100	76.064	Equus_asinus_asinus
ENSGALG00000039917	EXOSC1	55	63.393	ENSECAG00000010621	EXOSC1	71	63.393	Equus_caballus
ENSGALG00000039917	EXOSC1	100	85.616	ENSEEUG00000005647	EXOSC1	100	72.308	Erinaceus_europaeus
ENSGALG00000039917	EXOSC1	99	83.333	ENSELUG00000017369	exosc1	97	71.257	Esox_lucius
ENSGALG00000039917	EXOSC1	100	86.301	ENSFCAG00000040563	EXOSC1	100	83.529	Felis_catus
ENSGALG00000039917	EXOSC1	100	95.205	ENSFALG00000008450	EXOSC1	100	80.000	Ficedula_albicollis
ENSGALG00000039917	EXOSC1	100	86.986	ENSFDAG00000000846	EXOSC1	100	73.333	Fukomys_damarensis
ENSGALG00000039917	EXOSC1	99	80.000	ENSFHEG00000009154	exosc1	98	63.351	Fundulus_heteroclitus
ENSGALG00000039917	EXOSC1	99	83.448	ENSGMOG00000008993	exosc1	98	65.445	Gadus_morhua
ENSGALG00000039917	EXOSC1	99	79.310	ENSGAFG00000010265	exosc1	93	72.892	Gambusia_affinis
ENSGALG00000039917	EXOSC1	99	82.759	ENSGACG00000018936	exosc1	98	65.445	Gasterosteus_aculeatus
ENSGALG00000039917	EXOSC1	100	90.411	ENSGAGG00000019192	EXOSC1	100	73.333	Gopherus_agassizii
ENSGALG00000039917	EXOSC1	100	82.353	ENSGGOG00000003099	EXOSC1	100	82.353	Gorilla_gorilla
ENSGALG00000039917	EXOSC1	99	84.138	ENSHBUG00000017857	exosc1	98	65.969	Haplochromis_burtoni
ENSGALG00000039917	EXOSC1	100	86.986	ENSHGLG00000016927	EXOSC1	100	73.333	Heterocephalus_glaber_female
ENSGALG00000039917	EXOSC1	100	86.986	ENSHGLG00100012208	EXOSC1	100	73.333	Heterocephalus_glaber_male
ENSGALG00000039917	EXOSC1	99	82.069	ENSHCOG00000019882	exosc1	98	63.874	Hippocampus_comes
ENSGALG00000039917	EXOSC1	99	84.828	ENSIPUG00000007685	exosc1	98	69.110	Ictalurus_punctatus
ENSGALG00000039917	EXOSC1	57	57.522	ENSSTOG00000029860	-	93	57.522	Ictidomys_tridecemlineatus
ENSGALG00000039917	EXOSC1	100	86.301	ENSSTOG00000006615	EXOSC1	100	72.821	Ictidomys_tridecemlineatus
ENSGALG00000039917	EXOSC1	100	85.616	ENSJJAG00000013311	Exosc1	100	72.821	Jaculus_jaculus
ENSGALG00000039917	EXOSC1	99	83.333	ENSKMAG00000001202	exosc1	80	73.214	Kryptolebias_marmoratus
ENSGALG00000039917	EXOSC1	99	84.138	ENSLBEG00000011448	exosc1	98	65.969	Labrus_bergylta
ENSGALG00000039917	EXOSC1	98	60.465	ENSLOCG00000003776	exosc1	98	60.465	Lepisosteus_oculatus
ENSGALG00000039917	EXOSC1	100	87.671	ENSLAFG00000015983	EXOSC1	100	73.333	Loxodonta_africana
ENSGALG00000039917	EXOSC1	100	86.301	ENSMFAG00000001493	EXOSC1	100	82.353	Macaca_fascicularis
ENSGALG00000039917	EXOSC1	100	86.301	ENSMMUG00000020028	EXOSC1	100	82.353	Macaca_mulatta
ENSGALG00000039917	EXOSC1	100	86.301	ENSMNEG00000029816	EXOSC1	100	82.353	Macaca_nemestrina
ENSGALG00000039917	EXOSC1	100	80.137	ENSMLEG00000027643	EXOSC1	100	67.179	Mandrillus_leucophaeus
ENSGALG00000039917	EXOSC1	99	85.517	ENSMAMG00000012200	exosc1	98	66.492	Mastacembelus_armatus
ENSGALG00000039917	EXOSC1	99	84.138	ENSMZEG00005007042	exosc1	98	65.969	Maylandia_zebra
ENSGALG00000039917	EXOSC1	100	84.118	ENSMAUG00000020462	-	100	84.118	Mesocricetus_auratus
ENSGALG00000039917	EXOSC1	100	86.301	ENSMICG00000007664	EXOSC1	100	82.941	Microcebus_murinus
ENSGALG00000039917	EXOSC1	100	82.877	ENSMOCG00000017124	-	97	67.368	Microtus_ochrogaster
ENSGALG00000039917	EXOSC1	100	88.356	ENSMOCG00000006004	-	100	73.333	Microtus_ochrogaster
ENSGALG00000039917	EXOSC1	99	59.310	ENSMMOG00000021403	exosc1	98	56.548	Mola_mola
ENSGALG00000039917	EXOSC1	100	86.395	ENSMODG00000004213	EXOSC1	100	72.449	Monodelphis_domestica
ENSGALG00000039917	EXOSC1	99	84.138	ENSMALG00000007061	exosc1	92	65.761	Monopterus_albus
ENSGALG00000039917	EXOSC1	100	87.671	MGP_CAROLIEiJ_G0022959	Exosc1	100	73.333	Mus_caroli
ENSGALG00000039917	EXOSC1	100	87.671	ENSMUSG00000034321	Exosc1	100	73.333	Mus_musculus
ENSGALG00000039917	EXOSC1	100	88.356	MGP_PahariEiJ_G0014449	Exosc1	100	73.333	Mus_pahari
ENSGALG00000039917	EXOSC1	100	87.671	MGP_SPRETEiJ_G0023880	Exosc1	100	73.333	Mus_spretus
ENSGALG00000039917	EXOSC1	100	86.301	ENSMPUG00000017044	EXOSC1	100	72.821	Mustela_putorius_furo
ENSGALG00000039917	EXOSC1	100	86.986	ENSMLUG00000009228	EXOSC1	100	72.308	Myotis_lucifugus
ENSGALG00000039917	EXOSC1	100	86.986	ENSNGAG00000022033	Exosc1	100	72.308	Nannospalax_galili
ENSGALG00000039917	EXOSC1	99	60.690	ENSNBRG00000024007	exosc1	97	58.929	Neolamprologus_brichardi
ENSGALG00000039917	EXOSC1	100	85.616	ENSNLEG00000013872	EXOSC1	100	81.765	Nomascus_leucogenys
ENSGALG00000039917	EXOSC1	53	60.000	ENSMEUG00000002246	EXOSC1	100	60.000	Notamacropus_eugenii
ENSGALG00000039917	EXOSC1	100	87.671	ENSOPRG00000005065	EXOSC1	100	72.821	Ochotona_princeps
ENSGALG00000039917	EXOSC1	100	86.986	ENSODEG00000016709	EXOSC1	100	73.333	Octodon_degus
ENSGALG00000039917	EXOSC1	99	84.138	ENSONIG00000017683	exosc1	98	65.969	Oreochromis_niloticus
ENSGALG00000039917	EXOSC1	82	86.957	ENSOANG00000006563	EXOSC1	98	86.290	Ornithorhynchus_anatinus
ENSGALG00000039917	EXOSC1	100	87.075	ENSOCUG00000011898	-	100	72.959	Oryctolagus_cuniculus
ENSGALG00000039917	EXOSC1	100	81.507	ENSOCUG00000026461	-	100	67.692	Oryctolagus_cuniculus
ENSGALG00000039917	EXOSC1	99	82.192	ENSORLG00000011595	exosc1	98	64.583	Oryzias_latipes
ENSGALG00000039917	EXOSC1	99	82.192	ENSORLG00020005831	exosc1	98	65.104	Oryzias_latipes_hni
ENSGALG00000039917	EXOSC1	99	82.192	ENSORLG00015004317	exosc1	98	64.583	Oryzias_latipes_hsok
ENSGALG00000039917	EXOSC1	99	64.828	ENSOMEG00000013907	exosc1	98	56.906	Oryzias_melastigma
ENSGALG00000039917	EXOSC1	100	85.616	ENSOGAG00000016259	EXOSC1	100	71.795	Otolemur_garnettii
ENSGALG00000039917	EXOSC1	100	86.301	ENSOARG00000010136	EXOSC1	100	72.821	Ovis_aries
ENSGALG00000039917	EXOSC1	100	79.866	ENSPPAG00000039842	EXOSC1	100	67.172	Pan_paniscus
ENSGALG00000039917	EXOSC1	100	86.301	ENSPPRG00000023366	EXOSC1	100	83.529	Panthera_pardus
ENSGALG00000039917	EXOSC1	100	86.301	ENSPTIG00000017701	EXOSC1	100	83.529	Panthera_tigris_altaica
ENSGALG00000039917	EXOSC1	100	86.301	ENSPTRG00000002808	EXOSC1	100	82.353	Pan_troglodytes
ENSGALG00000039917	EXOSC1	100	86.301	ENSPANG00000021324	EXOSC1	100	82.353	Papio_anubis
ENSGALG00000039917	EXOSC1	99	84.828	ENSPKIG00000016037	exosc1	98	68.586	Paramormyrops_kingsleyae
ENSGALG00000039917	EXOSC1	100	84.247	ENSPSIG00000013571	EXOSC1	100	83.065	Pelodiscus_sinensis
ENSGALG00000039917	EXOSC1	98	75.301	ENSPMGG00000014002	exosc1	98	75.301	Periophthalmus_magnuspinnatus
ENSGALG00000039917	EXOSC1	100	88.356	ENSPEMG00000010710	-	100	73.333	Peromyscus_maniculatus_bairdii
ENSGALG00000039917	EXOSC1	100	71.233	ENSPMAG00000000195	exosc1	95	61.497	Petromyzon_marinus
ENSGALG00000039917	EXOSC1	100	85.616	ENSPCIG00000002210	EXOSC1	99	72.821	Phascolarctos_cinereus
ENSGALG00000039917	EXOSC1	99	79.310	ENSPFOG00000006755	exosc1	94	62.827	Poecilia_formosa
ENSGALG00000039917	EXOSC1	99	79.310	ENSPLAG00000005880	exosc1	97	71.975	Poecilia_latipinna
ENSGALG00000039917	EXOSC1	99	79.310	ENSPMEG00000015598	exosc1	93	72.289	Poecilia_mexicana
ENSGALG00000039917	EXOSC1	98	72.892	ENSPREG00000000405	exosc1	93	72.892	Poecilia_reticulata
ENSGALG00000039917	EXOSC1	100	85.616	ENSPPYG00000002531	EXOSC1	100	71.282	Pongo_abelii
ENSGALG00000039917	EXOSC1	100	87.671	ENSPCAG00000009135	EXOSC1	100	72.308	Procavia_capensis
ENSGALG00000039917	EXOSC1	100	79.452	ENSPCOG00000027539	EXOSC1	100	77.059	Propithecus_coquereli
ENSGALG00000039917	EXOSC1	100	86.986	ENSPVAG00000003372	EXOSC1	100	72.308	Pteropus_vampyrus
ENSGALG00000039917	EXOSC1	99	84.138	ENSPNYG00000021745	exosc1	98	75.904	Pundamilia_nyererei
ENSGALG00000039917	EXOSC1	99	83.448	ENSPNAG00000001944	exosc1	99	77.976	Pygocentrus_nattereri
ENSGALG00000039917	EXOSC1	100	88.356	ENSRNOG00000048708	Exosc1	100	73.333	Rattus_norvegicus
ENSGALG00000039917	EXOSC1	100	86.301	ENSRBIG00000035618	EXOSC1	100	82.353	Rhinopithecus_bieti
ENSGALG00000039917	EXOSC1	100	86.301	ENSRROG00000032589	EXOSC1	100	82.353	Rhinopithecus_roxellana
ENSGALG00000039917	EXOSC1	100	86.986	ENSSBOG00000000359	EXOSC1	100	83.529	Saimiri_boliviensis_boliviensis
ENSGALG00000039917	EXOSC1	100	85.714	ENSSHAG00000018219	EXOSC1	100	85.714	Sarcophilus_harrisii
ENSGALG00000039917	EXOSC1	99	84.138	ENSSFOG00015009069	exosc1	98	68.586	Scleropages_formosus
ENSGALG00000039917	EXOSC1	99	80.690	ENSSFOG00015016289	-	98	74.850	Scleropages_formosus
ENSGALG00000039917	EXOSC1	99	84.138	ENSSMAG00000003721	exosc1	98	65.445	Scophthalmus_maximus
ENSGALG00000039917	EXOSC1	99	84.828	ENSSDUG00000002993	exosc1	98	65.445	Seriola_dumerili
ENSGALG00000039917	EXOSC1	99	84.828	ENSSLDG00000025181	exosc1	98	65.445	Seriola_lalandi_dorsalis
ENSGALG00000039917	EXOSC1	86	88.430	ENSSARG00000000162	EXOSC1	100	71.795	Sorex_araneus
ENSGALG00000039917	EXOSC1	99	87.500	ENSSPUG00000012263	EXOSC1	99	72.165	Sphenodon_punctatus
ENSGALG00000039917	EXOSC1	99	73.103	ENSSPAG00000016792	exosc1	82	57.592	Stegastes_partitus
ENSGALG00000039917	EXOSC1	100	84.932	ENSSSCG00000010518	EXOSC1	91	72.308	Sus_scrofa
ENSGALG00000039917	EXOSC1	100	93.836	ENSTGUG00000009692	EXOSC1	99	77.083	Taeniopygia_guttata
ENSGALG00000039917	EXOSC1	99	73.793	ENSTRUG00000007706	exosc1	98	58.947	Takifugu_rubripes
ENSGALG00000039917	EXOSC1	99	73.649	ENSTNIG00000014079	exosc1	97	59.067	Tetraodon_nigroviridis
ENSGALG00000039917	EXOSC1	92	85.185	ENSTBEG00000006011	EXOSC1	100	72.165	Tupaia_belangeri
ENSGALG00000039917	EXOSC1	100	86.301	ENSTTRG00000009887	EXOSC1	100	72.283	Tursiops_truncatus
ENSGALG00000039917	EXOSC1	100	67.059	ENSUAMG00000010266	EXOSC1	100	67.059	Ursus_americanus
ENSGALG00000039917	EXOSC1	100	67.059	ENSUMAG00000022002	EXOSC1	100	67.059	Ursus_maritimus
ENSGALG00000039917	EXOSC1	100	85.616	ENSVVUG00000023192	EXOSC1	63	72.821	Vulpes_vulpes
ENSGALG00000039917	EXOSC1	100	82.192	ENSXETG00000003434	exosc1	99	68.229	Xenopus_tropicalis
ENSGALG00000039917	EXOSC1	89	78.400	ENSXCOG00000014499	exosc1	96	78.400	Xiphophorus_couchianus
ENSGALG00000039917	EXOSC1	98	72.892	ENSXMAG00000023382	exosc1	93	72.892	Xiphophorus_maculatus