EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSGALG00000040181 (Gene tree)
Gene ID: 415294
Gene Symbol: EDC3
Alias: LSM16
Full Name: Gallus gallus enhancer of mRNA decapping 3 (EDC3)%2C mRNA.
Gene Type: protein_coding
Species: Gallus_gallus
Status: putative
Strand: Plus strand
Length: 22126 bases
Position: chr10:2903249-2925374
Accession: NM_001030385
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGALP00000045770	FDF	PF09532.10	1.4e-15	1	1
ENSGALP00000045770	LSM14	PF12701.7	9.8e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGALT00000073307	-	2355	-	ENSGALP00000045770	506 (aa)	XP_015134284	A0A1D5NZF2

Gene Model

Click here to download ENSGALG00000040181's gene model file

Pathways

Pathway ID	Pathway Name	Source
gga03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSGALG00000040181's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGALG00000040181	EDC3	100	88.583	ENSG00000179151	EDC3	100	98.148	Homo_sapiens
ENSGALG00000040181	EDC3	99	55.837	ENSAPOG00000008655	EDC3	99	56.226	Acanthochromis_polyacanthus
ENSGALG00000040181	EDC3	100	70.138	ENSAPOG00000010791	edc3	100	70.138	Acanthochromis_polyacanthus
ENSGALG00000040181	EDC3	100	87.992	ENSAMEG00000008963	EDC3	100	87.992	Ailuropoda_melanoleuca
ENSGALG00000040181	EDC3	100	69.428	ENSACIG00000017751	edc3	100	69.428	Amphilophus_citrinellus
ENSGALG00000040181	EDC3	99	59.570	ENSACIG00000005330	EDC3	99	59.570	Amphilophus_citrinellus
ENSGALG00000040181	EDC3	99	58.789	ENSAOCG00000009103	-	99	58.708	Amphiprion_ocellaris
ENSGALG00000040181	EDC3	100	70.138	ENSAOCG00000005431	edc3	100	70.138	Amphiprion_ocellaris
ENSGALG00000040181	EDC3	100	70.138	ENSAPEG00000000968	edc3	100	70.138	Amphiprion_percula
ENSGALG00000040181	EDC3	99	58.789	ENSAPEG00000007841	EDC3	99	58.789	Amphiprion_percula
ENSGALG00000040181	EDC3	100	70.611	ENSATEG00000015505	edc3	100	70.611	Anabas_testudineus
ENSGALG00000040181	EDC3	100	58.925	ENSATEG00000004205	-	100	58.925	Anabas_testudineus
ENSGALG00000040181	EDC3	90	97.351	ENSAPLG00000008957	EDC3	100	97.351	Anas_platyrhynchos
ENSGALG00000040181	EDC3	78	90.152	ENSACAG00000000460	-	100	90.152	Anolis_carolinensis
ENSGALG00000040181	EDC3	100	88.780	ENSANAG00000024078	EDC3	100	88.780	Aotus_nancymaae
ENSGALG00000040181	EDC3	100	68.245	ENSACLG00000007232	edc3	100	68.245	Astatotilapia_calliptera
ENSGALG00000040181	EDC3	99	60.000	ENSACLG00000018776	-	99	60.000	Astatotilapia_calliptera
ENSGALG00000040181	EDC3	100	71.624	ENSAMXG00000001589	edc3	100	71.624	Astyanax_mexicanus
ENSGALG00000040181	EDC3	100	88.386	ENSBTAG00000007308	EDC3	100	88.386	Bos_taurus
ENSGALG00000040181	EDC3	100	88.780	ENSCJAG00000017681	EDC3	100	88.780	Callithrix_jacchus
ENSGALG00000040181	EDC3	100	88.189	ENSCAFG00000017935	EDC3	100	88.189	Canis_familiaris
ENSGALG00000040181	EDC3	100	88.189	ENSCAFG00020003909	EDC3	100	88.189	Canis_lupus_dingo
ENSGALG00000040181	EDC3	100	88.583	ENSCHIG00000023658	EDC3	100	88.583	Capra_hircus
ENSGALG00000040181	EDC3	100	88.583	ENSTSYG00000004822	EDC3	100	88.583	Carlito_syrichta
ENSGALG00000040181	EDC3	100	87.795	ENSCPOG00000015595	EDC3	100	87.795	Cavia_porcellus
ENSGALG00000040181	EDC3	100	88.976	ENSCCAG00000021663	EDC3	100	88.976	Cebus_capucinus
ENSGALG00000040181	EDC3	100	88.976	ENSCATG00000037511	EDC3	100	88.976	Cercocebus_atys
ENSGALG00000040181	EDC3	100	87.205	ENSCLAG00000005700	EDC3	100	87.205	Chinchilla_lanigera
ENSGALG00000040181	EDC3	100	88.976	ENSCSAG00000014239	EDC3	100	88.976	Chlorocebus_sabaeus
ENSGALG00000040181	EDC3	100	93.701	ENSCPBG00000024239	EDC3	100	93.701	Chrysemys_picta_bellii
ENSGALG00000040181	EDC3	100	38.077	ENSCING00000022142	-	99	38.224	Ciona_intestinalis
ENSGALG00000040181	EDC3	100	88.976	ENSCANG00000028699	EDC3	100	88.976	Colobus_angolensis_palliatus
ENSGALG00000040181	EDC3	100	89.173	ENSCGRG00001013874	Edc3	100	89.173	Cricetulus_griseus_chok1gshd
ENSGALG00000040181	EDC3	100	89.173	ENSCGRG00000011885	Edc3	100	89.173	Cricetulus_griseus_crigri
ENSGALG00000040181	EDC3	99	70.751	ENSCSEG00000012996	edc3	99	70.751	Cynoglossus_semilaevis
ENSGALG00000040181	EDC3	100	69.625	ENSCVAG00000008023	edc3	100	69.625	Cyprinodon_variegatus
ENSGALG00000040181	EDC3	99	69.608	ENSDARG00000051931	edc3	99	69.804	Danio_rerio
ENSGALG00000040181	EDC3	100	78.058	ENSDNOG00000030661	EDC3	100	78.058	Dasypus_novemcinctus
ENSGALG00000040181	EDC3	64	100.000	ENSETEG00000002398	-	64	100.000	Echinops_telfairi
ENSGALG00000040181	EDC3	100	88.976	ENSEASG00005005071	EDC3	100	88.976	Equus_asinus_asinus
ENSGALG00000040181	EDC3	100	88.976	ENSECAG00000017994	EDC3	100	88.976	Equus_caballus
ENSGALG00000040181	EDC3	100	66.536	ENSELUG00000005794	edc3	100	66.536	Esox_lucius
ENSGALG00000040181	EDC3	100	62.868	ENSELUG00000007607	EDC3	100	62.868	Esox_lucius
ENSGALG00000040181	EDC3	100	87.402	ENSFCAG00000002014	EDC3	100	87.402	Felis_catus
ENSGALG00000040181	EDC3	98	92.354	ENSFALG00000004543	EDC3	96	92.354	Ficedula_albicollis
ENSGALG00000040181	EDC3	100	87.598	ENSFDAG00000012582	EDC3	100	87.598	Fukomys_damarensis
ENSGALG00000040181	EDC3	100	69.822	ENSFHEG00000009375	edc3	100	69.822	Fundulus_heteroclitus
ENSGALG00000040181	EDC3	100	69.020	ENSGMOG00000002715	edc3	100	69.020	Gadus_morhua
ENSGALG00000040181	EDC3	100	68.245	ENSGAFG00000014433	edc3	100	68.047	Gambusia_affinis
ENSGALG00000040181	EDC3	99	56.250	ENSGACG00000014671	EDC3	99	56.505	Gasterosteus_aculeatus
ENSGALG00000040181	EDC3	100	68.836	ENSGACG00000009783	edc3	100	68.836	Gasterosteus_aculeatus
ENSGALG00000040181	EDC3	100	93.688	ENSGAGG00000023477	EDC3	100	93.688	Gopherus_agassizii
ENSGALG00000040181	EDC3	100	88.583	ENSGGOG00000003552	EDC3	100	88.583	Gorilla_gorilla
ENSGALG00000040181	EDC3	100	68.245	ENSHBUG00000003635	edc3	100	68.245	Haplochromis_burtoni
ENSGALG00000040181	EDC3	99	60.000	ENSHBUG00000020817	EDC3	99	60.000	Haplochromis_burtoni
ENSGALG00000040181	EDC3	100	67.387	ENSHCOG00000016834	edc3	100	68.173	Hippocampus_comes
ENSGALG00000040181	EDC3	99	70.254	ENSIPUG00000005695	edc3	100	70.254	Ictalurus_punctatus
ENSGALG00000040181	EDC3	100	88.976	ENSSTOG00000013936	EDC3	100	88.976	Ictidomys_tridecemlineatus
ENSGALG00000040181	EDC3	100	88.583	ENSJJAG00000008074	Edc3	100	88.583	Jaculus_jaculus
ENSGALG00000040181	EDC3	99	56.719	ENSKMAG00000001987	EDC3	99	56.719	Kryptolebias_marmoratus
ENSGALG00000040181	EDC3	100	69.231	ENSKMAG00000001243	edc3	100	69.412	Kryptolebias_marmoratus
ENSGALG00000040181	EDC3	100	57.700	ENSLBEG00000017984	EDC3	100	57.700	Labrus_bergylta
ENSGALG00000040181	EDC3	100	69.352	ENSLBEG00000013435	edc3	99	69.352	Labrus_bergylta
ENSGALG00000040181	EDC3	100	79.572	ENSLACG00000014149	EDC3	100	79.572	Latimeria_chalumnae
ENSGALG00000040181	EDC3	100	68.493	ENSLOCG00000014625	edc3	100	69.080	Lepisosteus_oculatus
ENSGALG00000040181	EDC3	100	88.955	ENSLAFG00000002992	EDC3	100	88.955	Loxodonta_africana
ENSGALG00000040181	EDC3	100	88.583	ENSMFAG00000043074	EDC3	100	88.583	Macaca_fascicularis
ENSGALG00000040181	EDC3	100	88.583	ENSMMUG00000011071	EDC3	100	88.583	Macaca_mulatta
ENSGALG00000040181	EDC3	100	88.583	ENSMNEG00000035316	EDC3	100	88.583	Macaca_nemestrina
ENSGALG00000040181	EDC3	100	88.976	ENSMLEG00000030372	EDC3	100	88.976	Mandrillus_leucophaeus
ENSGALG00000040181	EDC3	100	58.203	ENSMAMG00000005423	-	100	58.398	Mastacembelus_armatus
ENSGALG00000040181	EDC3	100	69.625	ENSMAMG00000000505	edc3	100	69.625	Mastacembelus_armatus
ENSGALG00000040181	EDC3	100	68.245	ENSMZEG00005004892	edc3	100	68.245	Maylandia_zebra
ENSGALG00000040181	EDC3	99	60.078	ENSMZEG00005005654	EDC3	99	60.078	Maylandia_zebra
ENSGALG00000040181	EDC3	100	99.012	ENSMGAG00000002617	EDC3	100	99.012	Meleagris_gallopavo
ENSGALG00000040181	EDC3	100	88.780	ENSMICG00000043190	EDC3	100	88.780	Microcebus_murinus
ENSGALG00000040181	EDC3	100	88.780	ENSMOCG00000016205	Edc3	100	88.780	Microtus_ochrogaster
ENSGALG00000040181	EDC3	99	69.763	ENSMMOG00000012278	edc3	99	69.960	Mola_mola
ENSGALG00000040181	EDC3	100	90.551	ENSMODG00000009442	EDC3	100	90.551	Monodelphis_domestica
ENSGALG00000040181	EDC3	100	70.217	ENSMALG00000008658	edc3	100	70.217	Monopterus_albus
ENSGALG00000040181	EDC3	100	87.795	MGP_CAROLIEiJ_G0032280	Edc3	100	96.923	Mus_caroli
ENSGALG00000040181	EDC3	100	87.795	ENSMUSG00000038957	Edc3	100	96.923	Mus_musculus
ENSGALG00000040181	EDC3	100	87.992	MGP_PahariEiJ_G0015146	Edc3	100	96.923	Mus_pahari
ENSGALG00000040181	EDC3	100	87.992	MGP_SPRETEiJ_G0033420	Edc3	100	96.923	Mus_spretus
ENSGALG00000040181	EDC3	100	88.386	ENSMPUG00000017293	EDC3	100	88.386	Mustela_putorius_furo
ENSGALG00000040181	EDC3	100	87.647	ENSMLUG00000016382	EDC3	100	87.647	Myotis_lucifugus
ENSGALG00000040181	EDC3	100	88.189	ENSNGAG00000010923	Edc3	100	88.189	Nannospalax_galili
ENSGALG00000040181	EDC3	100	68.245	ENSNBRG00000002434	edc3	100	68.245	Neolamprologus_brichardi
ENSGALG00000040181	EDC3	99	60.000	ENSNBRG00000007881	EDC3	99	60.000	Neolamprologus_brichardi
ENSGALG00000040181	EDC3	100	78.937	ENSNLEG00000014577	EDC3	100	78.937	Nomascus_leucogenys
ENSGALG00000040181	EDC3	100	90.316	ENSMEUG00000009077	EDC3	100	90.316	Notamacropus_eugenii
ENSGALG00000040181	EDC3	79	98.148	ENSOPRG00000009540	-	79	98.148	Ochotona_princeps
ENSGALG00000040181	EDC3	99	59.768	ENSONIG00000002932	-	99	59.768	Oreochromis_niloticus
ENSGALG00000040181	EDC3	100	68.442	ENSONIG00000008434	edc3	100	68.442	Oreochromis_niloticus
ENSGALG00000040181	EDC3	78	87.374	ENSOCUG00000017740	EDC3	86	87.374	Oryctolagus_cuniculus
ENSGALG00000040181	EDC3	99	56.890	ENSORLG00000014399	-	98	56.890	Oryzias_latipes
ENSGALG00000040181	EDC3	100	68.245	ENSORLG00000004883	edc3	100	68.245	Oryzias_latipes
ENSGALG00000040181	EDC3	99	56.890	ENSORLG00020019446	-	99	56.890	Oryzias_latipes_hni
ENSGALG00000040181	EDC3	100	68.047	ENSORLG00020012262	edc3	100	68.047	Oryzias_latipes_hni
ENSGALG00000040181	EDC3	100	68.047	ENSORLG00015005634	edc3	100	68.047	Oryzias_latipes_hsok
ENSGALG00000040181	EDC3	99	56.496	ENSORLG00015017635	-	95	56.496	Oryzias_latipes_hsok
ENSGALG00000040181	EDC3	100	69.625	ENSOMEG00000014026	edc3	100	69.625	Oryzias_melastigma
ENSGALG00000040181	EDC3	99	57.087	ENSOMEG00000017354	EDC3	99	57.087	Oryzias_melastigma
ENSGALG00000040181	EDC3	100	88.189	ENSOGAG00000014441	EDC3	100	88.780	Otolemur_garnettii
ENSGALG00000040181	EDC3	100	87.819	ENSOARG00000003476	EDC3	100	88.212	Ovis_aries
ENSGALG00000040181	EDC3	100	88.583	ENSPPAG00000040143	EDC3	100	88.583	Pan_paniscus
ENSGALG00000040181	EDC3	100	87.795	ENSPPRG00000006257	EDC3	100	87.795	Panthera_pardus
ENSGALG00000040181	EDC3	100	87.795	ENSPTIG00000017424	EDC3	100	87.795	Panthera_tigris_altaica
ENSGALG00000040181	EDC3	100	88.583	ENSPTRG00000007279	EDC3	100	88.583	Pan_troglodytes
ENSGALG00000040181	EDC3	100	88.976	ENSPANG00000015997	EDC3	100	88.976	Papio_anubis
ENSGALG00000040181	EDC3	100	68.102	ENSPKIG00000004416	edc3	100	69.276	Paramormyrops_kingsleyae
ENSGALG00000040181	EDC3	99	66.929	ENSPKIG00000019810	EDC3	99	66.929	Paramormyrops_kingsleyae
ENSGALG00000040181	EDC3	100	86.417	ENSPSIG00000008474	EDC3	100	86.417	Pelodiscus_sinensis
ENSGALG00000040181	EDC3	100	68.173	ENSPMGG00000007223	edc3	100	68.173	Periophthalmus_magnuspinnatus
ENSGALG00000040181	EDC3	100	88.976	ENSPEMG00000015260	Edc3	100	88.976	Peromyscus_maniculatus_bairdii
ENSGALG00000040181	EDC3	100	89.526	ENSPCIG00000006276	EDC3	70	89.526	Phascolarctos_cinereus
ENSGALG00000040181	EDC3	100	68.836	ENSPFOG00000012204	edc3	100	68.836	Poecilia_formosa
ENSGALG00000040181	EDC3	100	68.836	ENSPLAG00000014420	edc3	100	68.836	Poecilia_latipinna
ENSGALG00000040181	EDC3	100	68.836	ENSPMEG00000023289	edc3	100	68.836	Poecilia_mexicana
ENSGALG00000040181	EDC3	100	68.836	ENSPREG00000016022	edc3	100	68.836	Poecilia_reticulata
ENSGALG00000040181	EDC3	100	87.402	ENSPPYG00000006642	EDC3	100	87.402	Pongo_abelii
ENSGALG00000040181	EDC3	88	98.148	ENSPCAG00000002802	EDC3	88	98.148	Procavia_capensis
ENSGALG00000040181	EDC3	100	88.780	ENSPCOG00000013364	EDC3	100	88.780	Propithecus_coquereli
ENSGALG00000040181	EDC3	100	87.992	ENSPVAG00000014733	EDC3	100	87.992	Pteropus_vampyrus
ENSGALG00000040181	EDC3	99	60.000	ENSPNYG00000009669	EDC3	99	60.000	Pundamilia_nyererei
ENSGALG00000040181	EDC3	100	68.442	ENSPNYG00000021797	edc3	100	68.245	Pundamilia_nyererei
ENSGALG00000040181	EDC3	100	70.349	ENSPNAG00000019657	edc3	100	70.349	Pygocentrus_nattereri
ENSGALG00000040181	EDC3	99	87.921	ENSRNOG00000019579	Edc3	99	88.515	Rattus_norvegicus
ENSGALG00000040181	EDC3	100	88.780	ENSRBIG00000019488	EDC3	100	88.780	Rhinopithecus_bieti
ENSGALG00000040181	EDC3	100	88.780	ENSRROG00000034959	EDC3	100	88.780	Rhinopithecus_roxellana
ENSGALG00000040181	EDC3	100	89.173	ENSSBOG00000004896	EDC3	100	89.173	Saimiri_boliviensis_boliviensis
ENSGALG00000040181	EDC3	96	90.144	ENSSHAG00000015075	EDC3	95	90.144	Sarcophilus_harrisii
ENSGALG00000040181	EDC3	100	62.992	ENSSFOG00015002439	edc3	100	64.844	Scleropages_formosus
ENSGALG00000040181	EDC3	99	71.569	ENSSFOG00015016939	edc3	99	71.765	Scleropages_formosus
ENSGALG00000040181	EDC3	99	56.947	ENSSMAG00000010176	-	99	56.947	Scophthalmus_maximus
ENSGALG00000040181	EDC3	100	69.822	ENSSMAG00000010695	edc3	100	69.822	Scophthalmus_maximus
ENSGALG00000040181	EDC3	100	70.020	ENSSDUG00000021844	edc3	100	70.414	Seriola_dumerili
ENSGALG00000040181	EDC3	99	60.742	ENSSDUG00000007671	EDC3	99	60.742	Seriola_dumerili
ENSGALG00000040181	EDC3	100	70.020	ENSSLDG00000022046	edc3	100	70.414	Seriola_lalandi_dorsalis
ENSGALG00000040181	EDC3	80	89.516	ENSSARG00000003907	EDC3	80	89.516	Sorex_araneus
ENSGALG00000040181	EDC3	100	93.110	ENSSPUG00000008232	EDC3	100	93.110	Sphenodon_punctatus
ENSGALG00000040181	EDC3	99	57.843	ENSSPAG00000020327	EDC3	99	58.431	Stegastes_partitus
ENSGALG00000040181	EDC3	100	70.217	ENSSPAG00000010009	edc3	100	70.217	Stegastes_partitus
ENSGALG00000040181	EDC3	100	88.583	ENSSSCG00000001903	EDC3	100	88.583	Sus_scrofa
ENSGALG00000040181	EDC3	100	97.431	ENSTGUG00000004007	EDC3	100	97.431	Taeniopygia_guttata
ENSGALG00000040181	EDC3	100	70.611	ENSTRUG00000017078	edc3	100	70.611	Takifugu_rubripes
ENSGALG00000040181	EDC3	100	69.548	ENSTNIG00000016047	edc3	100	69.548	Tetraodon_nigroviridis
ENSGALG00000040181	EDC3	100	88.166	ENSTTRG00000007990	EDC3	100	88.166	Tursiops_truncatus
ENSGALG00000040181	EDC3	100	87.992	ENSUAMG00000026710	-	100	87.992	Ursus_americanus
ENSGALG00000040181	EDC3	100	87.992	ENSUMAG00000005006	EDC3	96	87.992	Ursus_maritimus
ENSGALG00000040181	EDC3	79	85.185	ENSVPAG00000003499	-	79	85.185	Vicugna_pacos
ENSGALG00000040181	EDC3	100	88.189	ENSVVUG00000018601	EDC3	100	88.189	Vulpes_vulpes
ENSGALG00000040181	EDC3	68	82.471	ENSXETG00000010622	edc3	99	83.621	Xenopus_tropicalis
ENSGALG00000040181	EDC3	100	69.231	ENSXMAG00000007377	edc3	100	69.231	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000932	P-body	21873635.	IBA	Component
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0031087	deadenylation-independent decapping of nuclear-transcribed mRNA	21873635.	IBA	Process
GO:0033962	cytoplasmic mRNA processing body assembly	21873635.	IBA	Process
GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	-	IEA	Process
GO:1990174	phosphodiesterase decapping endonuclease activity	-	ISS	Function