EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSGALG00000042333 (Gene tree)
Gene ID: 374050
Gene Symbol: DDB1
Alias: -
Full Name: damage specific DNA binding protein 1
Gene Type: protein_coding
Species: Gallus_gallus
Status: putative
Strand: Minus strand
Length: 13317 bases
Position: chr5:312880-326196
Accession: 2717
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGALP00000050113	CPSF_A	PF03178.15	1.9e-84	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGALT00000054504	DDB1-201	3420	-	ENSGALP00000050113	1139 (aa)	-	A0A1D5PBI5

Gene Model

Click here to download ENSGALG00000042333's gene model file

Pathways

Pathway ID	Pathway Name	Source
gga03420	Nucleotide excision repair	KEGG
gga04120	Ubiquitin mediated proteolysis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSGALG00000042333's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGALG00000042333	DDB1	100	97.018	ENSG00000167986	DDB1	100	97.260	Homo_sapiens
ENSGALG00000042333	DDB1	98	90.934	ENSAPOG00000005036	ddb1	99	91.122	Acanthochromis_polyacanthus
ENSGALG00000042333	DDB1	100	97.105	ENSAMEG00000016518	DDB1	100	97.105	Ailuropoda_melanoleuca
ENSGALG00000042333	DDB1	86	91.224	ENSACIG00000020624	ddb1	99	91.224	Amphilophus_citrinellus
ENSGALG00000042333	DDB1	100	90.789	ENSAOCG00000003066	ddb1	100	90.789	Amphiprion_ocellaris
ENSGALG00000042333	DDB1	100	90.877	ENSAPEG00000000092	ddb1	100	90.877	Amphiprion_percula
ENSGALG00000042333	DDB1	94	91.070	ENSATEG00000020571	ddb1	97	91.070	Anabas_testudineus
ENSGALG00000042333	DDB1	98	98.489	ENSAPLG00000007174	DDB1	99	98.489	Anas_platyrhynchos
ENSGALG00000042333	DDB1	100	96.842	ENSACAG00000017758	DDB1	100	96.842	Anolis_carolinensis
ENSGALG00000042333	DDB1	100	97.018	ENSANAG00000021878	DDB1	100	97.018	Aotus_nancymaae
ENSGALG00000042333	DDB1	100	91.053	ENSACLG00000012401	ddb1	100	91.053	Astatotilapia_calliptera
ENSGALG00000042333	DDB1	100	97.105	ENSBTAG00000021569	DDB1	93	97.105	Bos_taurus
ENSGALG00000042333	DDB1	100	37.158	WBGene00010890	ddb-1	100	37.158	Caenorhabditis_elegans
ENSGALG00000042333	DDB1	100	97.018	ENSCJAG00000019319	DDB1	100	97.018	Callithrix_jacchus
ENSGALG00000042333	DDB1	100	97.105	ENSCAFG00000016264	DDB1	100	97.105	Canis_familiaris
ENSGALG00000042333	DDB1	94	96.930	ENSCAFG00020012722	DDB1	99	96.930	Canis_lupus_dingo
ENSGALG00000042333	DDB1	100	97.105	ENSCHIG00000014969	DDB1	100	97.105	Capra_hircus
ENSGALG00000042333	DDB1	100	96.579	ENSTSYG00000008027	DDB1	100	96.579	Carlito_syrichta
ENSGALG00000042333	DDB1	98	96.425	ENSCAPG00000010786	DDB1	100	96.425	Cavia_aperea
ENSGALG00000042333	DDB1	100	96.491	ENSCPOG00000009956	DDB1	100	96.491	Cavia_porcellus
ENSGALG00000042333	DDB1	100	97.018	ENSCCAG00000035883	DDB1	100	97.018	Cebus_capucinus
ENSGALG00000042333	DDB1	100	94.531	ENSCATG00000044495	DDB1	100	94.531	Cercocebus_atys
ENSGALG00000042333	DDB1	100	96.579	ENSCLAG00000004126	DDB1	100	96.579	Chinchilla_lanigera
ENSGALG00000042333	DDB1	100	97.018	ENSCSAG00000006392	DDB1	100	97.018	Chlorocebus_sabaeus
ENSGALG00000042333	DDB1	88	90.909	ENSCHOG00000011377	DDB1	90	90.909	Choloepus_hoffmanni
ENSGALG00000042333	DDB1	100	97.982	ENSCPBG00000017728	DDB1	100	97.982	Chrysemys_picta_bellii
ENSGALG00000042333	DDB1	100	61.925	ENSCING00000007437	-	100	61.925	Ciona_intestinalis
ENSGALG00000042333	DDB1	94	60.313	ENSCSAVG00000004783	-	100	60.313	Ciona_savignyi
ENSGALG00000042333	DDB1	100	97.018	ENSCANG00000019948	DDB1	100	97.018	Colobus_angolensis_palliatus
ENSGALG00000042333	DDB1	100	97.105	ENSCGRG00001016599	Ddb1	100	97.105	Cricetulus_griseus_chok1gshd
ENSGALG00000042333	DDB1	100	97.105	ENSCGRG00000013427	Ddb1	100	97.105	Cricetulus_griseus_crigri
ENSGALG00000042333	DDB1	93	90.575	ENSCSEG00000012499	ddb1	99	89.069	Cynoglossus_semilaevis
ENSGALG00000042333	DDB1	94	90.867	ENSCVAG00000019531	ddb1	99	90.867	Cyprinodon_variegatus
ENSGALG00000042333	DDB1	100	88.179	ENSDARG00000074431	ddb1	100	88.297	Danio_rerio
ENSGALG00000042333	DDB1	94	96.837	ENSDNOG00000014884	DDB1	97	96.837	Dasypus_novemcinctus
ENSGALG00000042333	DDB1	84	97.285	ENSDORG00000000127	Ddb1	100	97.285	Dipodomys_ordii
ENSGALG00000042333	DDB1	100	60.839	FBgn0260962	pic	100	60.839	Drosophila_melanogaster
ENSGALG00000042333	DDB1	71	97.638	ENSETEG00000001053	-	71	97.638	Echinops_telfairi
ENSGALG00000042333	DDB1	78	84.702	ENSEBUG00000014593	ddb1	97	84.702	Eptatretus_burgeri
ENSGALG00000042333	DDB1	100	96.930	ENSEASG00005008184	DDB1	100	96.930	Equus_asinus_asinus
ENSGALG00000042333	DDB1	100	97.018	ENSECAG00000012136	DDB1	100	97.018	Equus_caballus
ENSGALG00000042333	DDB1	85	94.613	ENSEEUG00000003194	DDB1	85	94.613	Erinaceus_europaeus
ENSGALG00000042333	DDB1	100	90.702	ENSELUG00000023868	ddb1	100	90.702	Esox_lucius
ENSGALG00000042333	DDB1	100	97.105	ENSFCAG00000029716	DDB1	100	97.105	Felis_catus
ENSGALG00000042333	DDB1	100	98.600	ENSFALG00000011981	DDB1	100	98.600	Ficedula_albicollis
ENSGALG00000042333	DDB1	100	96.667	ENSFDAG00000005128	DDB1	100	96.667	Fukomys_damarensis
ENSGALG00000042333	DDB1	90	91.765	ENSFHEG00000022133	ddb1	99	91.765	Fundulus_heteroclitus
ENSGALG00000042333	DDB1	79	94.649	ENSGMOG00000019386	ddb1	94	94.649	Gadus_morhua
ENSGALG00000042333	DDB1	94	90.587	ENSGAFG00000013142	ddb1	99	90.587	Gambusia_affinis
ENSGALG00000042333	DDB1	96	90.009	ENSGACG00000017182	ddb1	100	90.009	Gasterosteus_aculeatus
ENSGALG00000042333	DDB1	95	98.063	ENSGAGG00000014124	DDB1	100	98.063	Gopherus_agassizii
ENSGALG00000042333	DDB1	100	97.018	ENSGGOG00000004052	DDB1	100	97.018	Gorilla_gorilla
ENSGALG00000042333	DDB1	100	91.053	ENSHBUG00000008873	ddb1	100	91.053	Haplochromis_burtoni
ENSGALG00000042333	DDB1	100	96.667	ENSHGLG00000018430	DDB1	100	96.667	Heterocephalus_glaber_female
ENSGALG00000042333	DDB1	100	95.614	ENSHGLG00100014475	DDB1	100	95.614	Heterocephalus_glaber_male
ENSGALG00000042333	DDB1	94	90.335	ENSHCOG00000018670	ddb1	98	90.335	Hippocampus_comes
ENSGALG00000042333	DDB1	100	90.263	ENSIPUG00000005612	DDB1	100	90.263	Ictalurus_punctatus
ENSGALG00000042333	DDB1	100	97.018	ENSSTOG00000007552	DDB1	100	97.018	Ictidomys_tridecemlineatus
ENSGALG00000042333	DDB1	100	97.018	ENSJJAG00000017769	Ddb1	100	97.018	Jaculus_jaculus
ENSGALG00000042333	DDB1	94	90.680	ENSKMAG00000002315	ddb1	99	90.680	Kryptolebias_marmoratus
ENSGALG00000042333	DDB1	85	90.881	ENSLBEG00000017065	ddb1	99	90.881	Labrus_bergylta
ENSGALG00000042333	DDB1	100	93.695	ENSLACG00000017611	DDB1	100	93.695	Latimeria_chalumnae
ENSGALG00000042333	DDB1	92	83.333	ENSLOCG00000000012	ddb1	100	83.333	Lepisosteus_oculatus
ENSGALG00000042333	DDB1	100	96.842	ENSLAFG00000011513	DDB1	100	96.842	Loxodonta_africana
ENSGALG00000042333	DDB1	100	97.018	ENSMFAG00000042035	DDB1	100	97.018	Macaca_fascicularis
ENSGALG00000042333	DDB1	99	97.082	ENSMMUG00000002691	DDB1	99	97.082	Macaca_mulatta
ENSGALG00000042333	DDB1	100	97.018	ENSMNEG00000031559	DDB1	100	97.018	Macaca_nemestrina
ENSGALG00000042333	DDB1	100	97.018	ENSMLEG00000044136	DDB1	100	97.018	Mandrillus_leucophaeus
ENSGALG00000042333	DDB1	100	91.228	ENSMAMG00000014372	ddb1	100	91.228	Mastacembelus_armatus
ENSGALG00000042333	DDB1	100	90.965	ENSMZEG00005013835	ddb1	100	90.965	Maylandia_zebra
ENSGALG00000042333	DDB1	94	99.255	ENSMGAG00000004990	DDB1	100	99.255	Meleagris_gallopavo
ENSGALG00000042333	DDB1	100	97.105	ENSMAUG00000012926	Ddb1	100	97.105	Mesocricetus_auratus
ENSGALG00000042333	DDB1	100	97.018	ENSMICG00000013703	DDB1	100	97.018	Microcebus_murinus
ENSGALG00000042333	DDB1	100	97.018	ENSMOCG00000020499	Ddb1	100	97.018	Microtus_ochrogaster
ENSGALG00000042333	DDB1	86	91.020	ENSMMOG00000001758	ddb1	99	91.020	Mola_mola
ENSGALG00000042333	DDB1	100	87.889	ENSMODG00000020353	DDB1	100	87.889	Monodelphis_domestica
ENSGALG00000042333	DDB1	100	91.140	ENSMALG00000014071	ddb1	100	91.140	Monopterus_albus
ENSGALG00000042333	DDB1	100	97.105	MGP_CAROLIEiJ_G0022695	Ddb1	100	97.105	Mus_caroli
ENSGALG00000042333	DDB1	100	97.018	ENSMUSG00000024740	Ddb1	100	97.018	Mus_musculus
ENSGALG00000042333	DDB1	100	97.105	MGP_PahariEiJ_G0014189	Ddb1	100	97.105	Mus_pahari
ENSGALG00000042333	DDB1	100	97.105	MGP_SPRETEiJ_G0023609	Ddb1	100	97.105	Mus_spretus
ENSGALG00000042333	DDB1	100	93.947	ENSMPUG00000014200	DDB1	100	93.947	Mustela_putorius_furo
ENSGALG00000042333	DDB1	100	97.018	ENSMLUG00000013232	DDB1	100	97.018	Myotis_lucifugus
ENSGALG00000042333	DDB1	100	97.018	ENSNGAG00000009384	Ddb1	100	97.018	Nannospalax_galili
ENSGALG00000042333	DDB1	100	91.140	ENSNBRG00000019581	ddb1	100	91.140	Neolamprologus_brichardi
ENSGALG00000042333	DDB1	100	93.924	ENSNLEG00000002022	DDB1	100	93.924	Nomascus_leucogenys
ENSGALG00000042333	DDB1	90	97.887	ENSMEUG00000001099	DDB1	93	97.887	Notamacropus_eugenii
ENSGALG00000042333	DDB1	90	89.040	ENSOPRG00000008254	DDB1	90	89.040	Ochotona_princeps
ENSGALG00000042333	DDB1	100	96.404	ENSODEG00000002419	DDB1	100	96.404	Octodon_degus
ENSGALG00000042333	DDB1	100	91.053	ENSONIG00000005804	ddb1	100	91.053	Oreochromis_niloticus
ENSGALG00000042333	DDB1	91	97.287	ENSOANG00000004897	DDB1	100	97.287	Ornithorhynchus_anatinus
ENSGALG00000042333	DDB1	100	97.018	ENSOCUG00000001667	DDB1	100	97.018	Oryctolagus_cuniculus
ENSGALG00000042333	DDB1	96	89.734	ENSORLG00000001399	ddb1	98	90.970	Oryzias_latipes
ENSGALG00000042333	DDB1	96	89.643	ENSORLG00020001277	ddb1	97	89.643	Oryzias_latipes_hni
ENSGALG00000042333	DDB1	94	90.791	ENSORLG00015002080	ddb1	99	90.791	Oryzias_latipes_hsok
ENSGALG00000042333	DDB1	96	89.517	ENSOMEG00000006181	ddb1	99	89.517	Oryzias_melastigma
ENSGALG00000042333	DDB1	100	97.018	ENSOGAG00000016103	DDB1	100	97.018	Otolemur_garnettii
ENSGALG00000042333	DDB1	99	97.240	ENSOARG00000011716	DDB1	98	97.240	Ovis_aries
ENSGALG00000042333	DDB1	100	97.018	ENSPPAG00000035343	DDB1	100	97.018	Pan_paniscus
ENSGALG00000042333	DDB1	100	97.105	ENSPPRG00000013300	DDB1	100	97.105	Panthera_pardus
ENSGALG00000042333	DDB1	98	97.051	ENSPTIG00000006909	DDB1	98	97.051	Panthera_tigris_altaica
ENSGALG00000042333	DDB1	100	97.018	ENSPTRG00000003737	DDB1	100	97.018	Pan_troglodytes
ENSGALG00000042333	DDB1	100	97.018	ENSPANG00000000242	DDB1	100	97.018	Papio_anubis
ENSGALG00000042333	DDB1	94	90.960	ENSPKIG00000019213	ddb1	94	90.960	Paramormyrops_kingsleyae
ENSGALG00000042333	DDB1	98	97.331	ENSPSIG00000013275	DDB1	100	97.331	Pelodiscus_sinensis
ENSGALG00000042333	DDB1	86	90.918	ENSPMGG00000021179	ddb1	99	90.918	Periophthalmus_magnuspinnatus
ENSGALG00000042333	DDB1	100	97.105	ENSPEMG00000012241	Ddb1	100	97.105	Peromyscus_maniculatus_bairdii
ENSGALG00000042333	DDB1	89	86.739	ENSPMAG00000008479	ddb1	100	86.739	Petromyzon_marinus
ENSGALG00000042333	DDB1	100	97.456	ENSPCIG00000002643	DDB1	100	97.456	Phascolarctos_cinereus
ENSGALG00000042333	DDB1	100	90.535	ENSPFOG00000002768	ddb1	100	90.535	Poecilia_formosa
ENSGALG00000042333	DDB1	100	90.351	ENSPLAG00000017227	ddb1	100	90.351	Poecilia_latipinna
ENSGALG00000042333	DDB1	100	90.351	ENSPMEG00000011398	ddb1	100	90.351	Poecilia_mexicana
ENSGALG00000042333	DDB1	94	90.698	ENSPREG00000004440	ddb1	98	90.698	Poecilia_reticulata
ENSGALG00000042333	DDB1	100	92.227	ENSPPYG00000003193	DDB1	100	92.227	Pongo_abelii
ENSGALG00000042333	DDB1	85	96.716	ENSPCAG00000011040	DDB1	85	96.716	Procavia_capensis
ENSGALG00000042333	DDB1	100	95.622	ENSPCOG00000015176	DDB1	100	95.622	Propithecus_coquereli
ENSGALG00000042333	DDB1	100	96.930	ENSPVAG00000003847	DDB1	100	96.930	Pteropus_vampyrus
ENSGALG00000042333	DDB1	94	90.960	ENSPNAG00000006635	ddb1	97	90.960	Pygocentrus_nattereri
ENSGALG00000042333	DDB1	100	97.018	ENSRNOG00000020715	Ddb1	100	97.018	Rattus_norvegicus
ENSGALG00000042333	DDB1	100	97.018	ENSRBIG00000033611	DDB1	100	97.018	Rhinopithecus_bieti
ENSGALG00000042333	DDB1	100	97.018	ENSRROG00000041407	DDB1	100	97.018	Rhinopithecus_roxellana
ENSGALG00000042333	DDB1	100	97.105	ENSSBOG00000019775	DDB1	100	97.105	Saimiri_boliviensis_boliviensis
ENSGALG00000042333	DDB1	94	95.607	ENSSHAG00000011600	DDB1	100	95.607	Sarcophilus_harrisii
ENSGALG00000042333	DDB1	94	91.171	ENSSFOG00015011151	ddb1	97	91.171	Scleropages_formosus
ENSGALG00000042333	DDB1	100	90.702	ENSSMAG00000009495	ddb1	100	90.702	Scophthalmus_maximus
ENSGALG00000042333	DDB1	100	91.053	ENSSDUG00000004642	ddb1	100	91.053	Seriola_dumerili
ENSGALG00000042333	DDB1	100	91.053	ENSSLDG00000015804	ddb1	100	91.053	Seriola_lalandi_dorsalis
ENSGALG00000042333	DDB1	70	100.000	ENSSARG00000003290	-	72	100.000	Sorex_araneus
ENSGALG00000042333	DDB1	100	98.070	ENSSPUG00000019338	DDB1	100	98.070	Sphenodon_punctatus
ENSGALG00000042333	DDB1	94	90.977	ENSSPAG00000009888	ddb1	99	90.977	Stegastes_partitus
ENSGALG00000042333	DDB1	100	96.228	ENSSSCG00000013094	DDB1	100	96.228	Sus_scrofa
ENSGALG00000042333	DDB1	100	98.596	ENSTGUG00000006414	DDB1	100	98.596	Taeniopygia_guttata
ENSGALG00000042333	DDB1	94	89.655	ENSTRUG00000016682	ddb1	98	89.655	Takifugu_rubripes
ENSGALG00000042333	DDB1	88	84.930	ENSTNIG00000009565	ddb1	99	84.930	Tetraodon_nigroviridis
ENSGALG00000042333	DDB1	92	91.906	ENSTTRG00000011055	DDB1	94	91.906	Tursiops_truncatus
ENSGALG00000042333	DDB1	94	96.930	ENSUAMG00000017793	DDB1	93	96.930	Ursus_americanus
ENSGALG00000042333	DDB1	94	96.930	ENSUMAG00000011788	DDB1	98	96.930	Ursus_maritimus
ENSGALG00000042333	DDB1	90	97.059	ENSVPAG00000007963	DDB1	92	97.059	Vicugna_pacos
ENSGALG00000042333	DDB1	100	97.105	ENSVVUG00000004987	DDB1	100	97.105	Vulpes_vulpes
ENSGALG00000042333	DDB1	100	92.308	ENSXETG00000008820	ddb1	100	92.308	Xenopus_tropicalis
ENSGALG00000042333	DDB1	86	90.714	ENSXCOG00000013956	ddb1	99	90.714	Xiphophorus_couchianus
ENSGALG00000042333	DDB1	94	90.587	ENSXMAG00000000022	ddb1	99	90.587	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003684	damaged DNA binding	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISS	Component
GO:0005654	nucleoplasm	-	TAS	Component
GO:0005737	cytoplasm	-	ISS	Component
GO:0006281	DNA repair	-	TAS	Process
GO:0016567	protein ubiquitination	-	IEA	Process
GO:0031464	Cul4A-RING E3 ubiquitin ligase complex	-	ISS	Component
GO:0031465	Cul4B-RING E3 ubiquitin ligase complex	-	ISS	Component
GO:0042752	regulation of circadian rhythm	-	ISS	Process
GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	21873635.	IBA	Process
GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	-	ISS	Process
GO:0080008	Cul4-RING E3 ubiquitin ligase complex	-	ISS	Component