EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSGALG00000042598 (Gene tree)
Gene ID: 419554
Gene Symbol: PUM1
Alias: -
Full Name: Gallus gallus pumilio RNA binding family member 1 (PUM1)%2C mRNA.
Gene Type: protein_coding
Species: Gallus_gallus
Status: putative
Strand: Minus strand
Length: 68709 bases
Position: chr23:573168-641876
Accession: NM_001012840
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGALP00000068952	PUF	PF00806.19	8.5e-73	1	8
ENSGALP00000068952	PUF	PF00806.19	8.5e-73	2	8
ENSGALP00000068952	PUF	PF00806.19	8.5e-73	3	8
ENSGALP00000068952	PUF	PF00806.19	8.5e-73	4	8
ENSGALP00000068952	PUF	PF00806.19	8.5e-73	5	8
ENSGALP00000068952	PUF	PF00806.19	8.5e-73	6	8
ENSGALP00000068952	PUF	PF00806.19	8.5e-73	7	8
ENSGALP00000068952	PUF	PF00806.19	8.5e-73	8	8
ENSGALP00000046081	PUF	PF00806.19	8.7e-73	1	8
ENSGALP00000046081	PUF	PF00806.19	8.7e-73	2	8
ENSGALP00000046081	PUF	PF00806.19	8.7e-73	3	8
ENSGALP00000046081	PUF	PF00806.19	8.7e-73	4	8
ENSGALP00000046081	PUF	PF00806.19	8.7e-73	5	8
ENSGALP00000046081	PUF	PF00806.19	8.7e-73	6	8
ENSGALP00000046081	PUF	PF00806.19	8.7e-73	7	8
ENSGALP00000046081	PUF	PF00806.19	8.7e-73	8	8
ENSGALP00000067440	PUF	PF00806.19	1.4e-72	1	8
ENSGALP00000067440	PUF	PF00806.19	1.4e-72	2	8
ENSGALP00000067440	PUF	PF00806.19	1.4e-72	3	8
ENSGALP00000067440	PUF	PF00806.19	1.4e-72	4	8
ENSGALP00000067440	PUF	PF00806.19	1.4e-72	5	8
ENSGALP00000067440	PUF	PF00806.19	1.4e-72	6	8
ENSGALP00000067440	PUF	PF00806.19	1.4e-72	7	8
ENSGALP00000067440	PUF	PF00806.19	1.4e-72	8	8
ENSGALP00000055364	PUF	PF00806.19	1.9e-72	1	8
ENSGALP00000055364	PUF	PF00806.19	1.9e-72	2	8
ENSGALP00000055364	PUF	PF00806.19	1.9e-72	3	8
ENSGALP00000055364	PUF	PF00806.19	1.9e-72	4	8
ENSGALP00000055364	PUF	PF00806.19	1.9e-72	5	8
ENSGALP00000055364	PUF	PF00806.19	1.9e-72	6	8
ENSGALP00000055364	PUF	PF00806.19	1.9e-72	7	8
ENSGALP00000055364	PUF	PF00806.19	1.9e-72	8	8
ENSGALP00000071093	PUF	PF00806.19	6.5e-63	1	7
ENSGALP00000071093	PUF	PF00806.19	6.5e-63	2	7
ENSGALP00000071093	PUF	PF00806.19	6.5e-63	3	7
ENSGALP00000071093	PUF	PF00806.19	6.5e-63	4	7
ENSGALP00000071093	PUF	PF00806.19	6.5e-63	5	7
ENSGALP00000071093	PUF	PF00806.19	6.5e-63	6	7
ENSGALP00000071093	PUF	PF00806.19	6.5e-63	7	7
ENSGALP00000073509	PUF	PF00806.19	2.4e-59	1	7
ENSGALP00000073509	PUF	PF00806.19	2.4e-59	2	7
ENSGALP00000073509	PUF	PF00806.19	2.4e-59	3	7
ENSGALP00000073509	PUF	PF00806.19	2.4e-59	4	7
ENSGALP00000073509	PUF	PF00806.19	2.4e-59	5	7
ENSGALP00000073509	PUF	PF00806.19	2.4e-59	6	7
ENSGALP00000073509	PUF	PF00806.19	2.4e-59	7	7

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGALT00000095352	-	3443	-	ENSGALP00000071093	1143 (aa)	-	-
ENSGALT00000048377	-	3855	-	ENSGALP00000046081	1093 (aa)	-	Q2VB19
ENSGALT00000050930	-	3868	-	ENSGALP00000055364	1189 (aa)	XP_015153021	Q2VB19
ENSGALT00000102038	-	3281	-	ENSGALP00000068952	1089 (aa)	-	-
ENSGALT00000106155	-	3476	-	ENSGALP00000067440	1154 (aa)	-	UPI000739D4DF
ENSGALT00000103445	-	3452	-	ENSGALP00000073509	1146 (aa)	-	-

Gene Model

Click here to download ENSGALG00000042598's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGALG00000042598's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGALG00000042598	PUM1	100	98.785	ENSG00000134644	PUM1	100	99.119	Homo_sapiens
ENSGALG00000042598	PUM1	99	90.342	ENSAPOG00000021632	pum1	100	91.566	Acanthochromis_polyacanthus
ENSGALG00000042598	PUM1	100	97.899	ENSAMEG00000017656	PUM1	97	97.899	Ailuropoda_melanoleuca
ENSGALG00000042598	PUM1	99	90.342	ENSACIG00000021013	pum1	96	90.342	Amphilophus_citrinellus
ENSGALG00000042598	PUM1	99	90.342	ENSAOCG00000003944	pum1	100	91.566	Amphiprion_ocellaris
ENSGALG00000042598	PUM1	99	90.342	ENSAPEG00000014550	pum1	100	91.566	Amphiprion_percula
ENSGALG00000042598	PUM1	99	90.141	ENSATEG00000016004	pum1	100	91.566	Anabas_testudineus
ENSGALG00000042598	PUM1	100	99.748	ENSAPLG00000009351	PUM1	100	99.748	Anas_platyrhynchos
ENSGALG00000042598	PUM1	99	99.393	ENSACAG00000000682	PUM1	98	97.056	Anolis_carolinensis
ENSGALG00000042598	PUM1	100	97.621	ENSANAG00000027865	PUM1	100	98.068	Aotus_nancymaae
ENSGALG00000042598	PUM1	88	90.141	ENSACLG00000019354	pum1	96	90.141	Astatotilapia_calliptera
ENSGALG00000042598	PUM1	98	93.125	ENSAMXG00000020607	pum1	93	92.525	Astyanax_mexicanus
ENSGALG00000042598	PUM1	100	97.896	ENSBTAG00000018979	PUM1	100	99.034	Bos_taurus
ENSGALG00000042598	PUM1	99	98.785	ENSCJAG00000006035	PUM1	100	98.309	Callithrix_jacchus
ENSGALG00000042598	PUM1	100	98.988	ENSCAFG00000011205	PUM1	100	95.711	Canis_familiaris
ENSGALG00000042598	PUM1	90	98.988	ENSCAFG00020024616	PUM1	98	98.551	Canis_lupus_dingo
ENSGALG00000042598	PUM1	100	97.713	ENSCHIG00000012952	PUM1	100	98.551	Capra_hircus
ENSGALG00000042598	PUM1	99	98.785	ENSTSYG00000008868	PUM1	100	97.886	Carlito_syrichta
ENSGALG00000042598	PUM1	100	97.729	ENSCPOG00000031613	PUM1	100	97.886	Cavia_porcellus
ENSGALG00000042598	PUM1	100	98.785	ENSCATG00000017991	PUM1	100	98.792	Cercocebus_atys
ENSGALG00000042598	PUM1	100	97.645	ENSCLAG00000007662	PUM1	100	97.886	Chinchilla_lanigera
ENSGALG00000042598	PUM1	99	98.785	ENSCSAG00000001028	PUM1	100	97.000	Chlorocebus_sabaeus
ENSGALG00000042598	PUM1	93	94.956	ENSCHOG00000010245	PUM1	93	94.388	Choloepus_hoffmanni
ENSGALG00000042598	PUM1	100	98.811	ENSCPBG00000009288	PUM1	100	99.275	Chrysemys_picta_bellii
ENSGALG00000042598	PUM1	100	98.785	ENSCANG00000042606	PUM1	100	98.309	Colobus_angolensis_palliatus
ENSGALG00000042598	PUM1	100	97.164	ENSCGRG00001024949	Pum1	100	97.264	Cricetulus_griseus_chok1gshd
ENSGALG00000042598	PUM1	100	97.164	ENSCGRG00000014197	Pum1	100	97.264	Cricetulus_griseus_crigri
ENSGALG00000042598	PUM1	88	89.738	ENSCSEG00000015981	pum1	96	89.738	Cynoglossus_semilaevis
ENSGALG00000042598	PUM1	99	89.940	ENSCVAG00000007043	pum1	96	89.940	Cyprinodon_variegatus
ENSGALG00000042598	PUM1	98	93.125	ENSDARG00000099256	pum1	96	92.987	Danio_rerio
ENSGALG00000042598	PUM1	100	97.477	ENSDNOG00000010939	PUM1	100	97.477	Dasypus_novemcinctus
ENSGALG00000042598	PUM1	85	97.826	ENSDORG00000001875	Pum1	100	97.826	Dipodomys_ordii
ENSGALG00000042598	PUM1	86	96.795	ENSETEG00000004355	PUM1	87	92.585	Echinops_telfairi
ENSGALG00000042598	PUM1	99	98.785	ENSEASG00005010813	PUM1	100	97.561	Equus_asinus_asinus
ENSGALG00000042598	PUM1	99	98.785	ENSECAG00000021369	PUM1	100	97.561	Equus_caballus
ENSGALG00000042598	PUM1	83	99.333	ENSEEUG00000003871	PUM1	74	99.333	Erinaceus_europaeus
ENSGALG00000042598	PUM1	99	91.935	ENSELUG00000002409	pum1	93	91.935	Esox_lucius
ENSGALG00000042598	PUM1	100	98.079	ENSFCAG00000010374	PUM1	100	99.034	Felis_catus
ENSGALG00000042598	PUM1	100	99.798	ENSFALG00000001214	PUM1	97	97.655	Ficedula_albicollis
ENSGALG00000042598	PUM1	100	97.561	ENSFDAG00000011319	PUM1	100	97.761	Fukomys_damarensis
ENSGALG00000042598	PUM1	100	90.342	ENSGMOG00000010491	pum1	91	90.342	Gadus_morhua
ENSGALG00000042598	PUM1	99	89.940	ENSGAFG00000015617	pum1	100	91.084	Gambusia_affinis
ENSGALG00000042598	PUM1	99	90.141	ENSGACG00000005717	pum1	96	90.141	Gasterosteus_aculeatus
ENSGALG00000042598	PUM1	99	99.798	ENSGAGG00000001290	PUM1	99	99.798	Gopherus_agassizii
ENSGALG00000042598	PUM1	100	97.896	ENSGGOG00000011983	PUM1	100	98.309	Gorilla_gorilla
ENSGALG00000042598	PUM1	99	90.141	ENSHBUG00000018718	pum1	96	90.141	Haplochromis_burtoni
ENSGALG00000042598	PUM1	100	97.400	ENSHGLG00000013819	Pum1	100	97.637	Heterocephalus_glaber_female
ENSGALG00000042598	PUM1	100	97.400	ENSHGLG00100008621	Pum1	100	97.637	Heterocephalus_glaber_male
ENSGALG00000042598	PUM1	88	84.073	ENSHCOG00000005149	pum1	96	82.863	Hippocampus_comes
ENSGALG00000042598	PUM1	98	92.292	ENSIPUG00000020421	pum1	95	91.903	Ictalurus_punctatus
ENSGALG00000042598	PUM1	100	97.713	ENSSTOG00000010757	PUM1	100	97.886	Ictidomys_tridecemlineatus
ENSGALG00000042598	PUM1	100	97.255	ENSJJAG00000000530	Pum1	100	97.264	Jaculus_jaculus
ENSGALG00000042598	PUM1	99	89.738	ENSKMAG00000003481	pum1	96	89.738	Kryptolebias_marmoratus
ENSGALG00000042598	PUM1	99	89.718	ENSLBEG00000002527	pum1	96	89.718	Labrus_bergylta
ENSGALG00000042598	PUM1	100	88.877	ENSLACG00000017188	PUM1	99	88.010	Latimeria_chalumnae
ENSGALG00000042598	PUM1	99	96.559	ENSLOCG00000005210	pum1	92	96.559	Lepisosteus_oculatus
ENSGALG00000042598	PUM1	100	97.393	ENSLAFG00000003178	PUM1	100	97.393	Loxodonta_africana
ENSGALG00000042598	PUM1	100	97.896	ENSMFAG00000010291	PUM1	100	98.792	Macaca_fascicularis
ENSGALG00000042598	PUM1	100	97.896	ENSMMUG00000013520	PUM1	100	98.309	Macaca_mulatta
ENSGALG00000042598	PUM1	100	97.896	ENSMNEG00000034639	PUM1	100	98.309	Macaca_nemestrina
ENSGALG00000042598	PUM1	100	98.785	ENSMLEG00000038743	PUM1	100	98.309	Mandrillus_leucophaeus
ENSGALG00000042598	PUM1	99	89.940	ENSMAMG00000011606	pum1	96	89.940	Mastacembelus_armatus
ENSGALG00000042598	PUM1	99	90.141	ENSMZEG00005005834	pum1	96	90.141	Maylandia_zebra
ENSGALG00000042598	PUM1	100	99.748	ENSMGAG00000000724	PUM1	100	99.748	Meleagris_gallopavo
ENSGALG00000042598	PUM1	99	98.381	ENSMAUG00000022090	Pum1	100	97.388	Mesocricetus_auratus
ENSGALG00000042598	PUM1	99	95.619	ENSMICG00000012213	-	100	95.169	Microcebus_murinus
ENSGALG00000042598	PUM1	99	98.988	ENSMICG00000007713	-	100	98.551	Microcebus_murinus
ENSGALG00000042598	PUM1	99	98.178	ENSMOCG00000015463	Pum1	100	97.264	Microtus_ochrogaster
ENSGALG00000042598	PUM1	90	88.276	ENSMMOG00000019817	pum1	100	91.325	Mola_mola
ENSGALG00000042598	PUM1	99	99.393	ENSMODG00000017067	PUM1	100	97.817	Monodelphis_domestica
ENSGALG00000042598	PUM1	90	88.506	ENSMALG00000016399	pum1	100	91.566	Monopterus_albus
ENSGALG00000042598	PUM1	100	97.056	MGP_CAROLIEiJ_G0026549	Pum1	100	97.264	Mus_caroli
ENSGALG00000042598	PUM1	100	97.140	ENSMUSG00000028580	Pum1	100	97.140	Mus_musculus
ENSGALG00000042598	PUM1	100	96.981	MGP_PahariEiJ_G0028881	Pum1	100	97.139	Mus_pahari
ENSGALG00000042598	PUM1	100	97.056	MGP_SPRETEiJ_G0027529	Pum1	100	97.139	Mus_spretus
ENSGALG00000042598	PUM1	99	98.988	ENSMPUG00000015454	PUM1	100	97.813	Mustela_putorius_furo
ENSGALG00000042598	PUM1	99	98.583	ENSMLUG00000006490	PUM1	100	97.477	Myotis_lucifugus
ENSGALG00000042598	PUM1	100	97.484	ENSNGAG00000002378	Pum1	100	98.010	Nannospalax_galili
ENSGALG00000042598	PUM1	87	81.582	ENSNBRG00000010689	pum1	95	89.738	Neolamprologus_brichardi
ENSGALG00000042598	PUM1	100	96.468	ENSNLEG00000001151	PUM1	100	97.222	Nomascus_leucogenys
ENSGALG00000042598	PUM1	84	95.608	ENSMEUG00000000976	-	82	95.608	Notamacropus_eugenii
ENSGALG00000042598	PUM1	90	98.131	ENSOPRG00000001776	PUM1	76	98.131	Ochotona_princeps
ENSGALG00000042598	PUM1	100	97.438	ENSODEG00000003465	PUM1	100	97.761	Octodon_degus
ENSGALG00000042598	PUM1	100	89.600	ENSONIG00000002290	pum1	96	90.342	Oreochromis_niloticus
ENSGALG00000042598	PUM1	81	78.782	ENSOANG00000004902	-	100	78.782	Ornithorhynchus_anatinus
ENSGALG00000042598	PUM1	100	97.225	ENSOCUG00000008641	PUM1	99	97.225	Oryctolagus_cuniculus
ENSGALG00000042598	PUM1	99	91.751	ENSORLG00000011482	pum1	96	90.141	Oryzias_latipes
ENSGALG00000042598	PUM1	99	91.952	ENSORLG00020019461	pum1	96	90.342	Oryzias_latipes_hni
ENSGALG00000042598	PUM1	99	91.952	ENSORLG00015011375	pum1	96	90.342	Oryzias_latipes_hsok
ENSGALG00000042598	PUM1	90	93.253	ENSOMEG00000009312	pum1	100	91.325	Oryzias_melastigma
ENSGALG00000042598	PUM1	99	96.780	ENSOGAG00000011063	PUM1	100	94.878	Otolemur_garnettii
ENSGALG00000042598	PUM1	100	96.972	ENSOARG00000001899	PUM1	100	98.551	Ovis_aries
ENSGALG00000042598	PUM1	100	97.896	ENSPPAG00000044003	PUM1	100	98.309	Pan_paniscus
ENSGALG00000042598	PUM1	99	98.988	ENSPPRG00000001370	PUM1	100	98.259	Panthera_pardus
ENSGALG00000042598	PUM1	99	98.988	ENSPTIG00000010798	PUM1	100	98.010	Panthera_tigris_altaica
ENSGALG00000042598	PUM1	100	97.896	ENSPTRG00000000453	PUM1	100	98.309	Pan_troglodytes
ENSGALG00000042598	PUM1	100	97.813	ENSPANG00000016338	PUM1	100	98.792	Papio_anubis
ENSGALG00000042598	PUM1	99	92.308	ENSPKIG00000010578	pum1	93	92.308	Paramormyrops_kingsleyae
ENSGALG00000042598	PUM1	100	98.994	ENSPSIG00000014118	PUM1	100	98.991	Pelodiscus_sinensis
ENSGALG00000042598	PUM1	77	90.369	ENSPMGG00000005836	pum1	93	90.369	Periophthalmus_magnuspinnatus
ENSGALG00000042598	PUM1	99	98.381	ENSPEMG00000010009	Pum1	100	97.388	Peromyscus_maniculatus_bairdii
ENSGALG00000042598	PUM1	99	99.393	ENSPCIG00000014151	PUM1	100	99.275	Phascolarctos_cinereus
ENSGALG00000042598	PUM1	94	89.940	ENSPFOG00000007289	pum1	96	89.940	Poecilia_formosa
ENSGALG00000042598	PUM1	99	89.940	ENSPLAG00000007256	pum1	96	89.940	Poecilia_latipinna
ENSGALG00000042598	PUM1	89	89.940	ENSPMEG00000019543	pum1	95	89.940	Poecilia_mexicana
ENSGALG00000042598	PUM1	99	89.940	ENSPREG00000005195	pum1	96	89.940	Poecilia_reticulata
ENSGALG00000042598	PUM1	99	98.785	ENSPPYG00000001621	PUM1	100	95.878	Pongo_abelii
ENSGALG00000042598	PUM1	84	99.074	ENSPCAG00000001979	PUM1	74	99.074	Procavia_capensis
ENSGALG00000042598	PUM1	99	98.988	ENSPCOG00000004398	PUM1	100	98.551	Propithecus_coquereli
ENSGALG00000042598	PUM1	100	95.627	ENSPVAG00000005207	PUM1	97	95.627	Pteropus_vampyrus
ENSGALG00000042598	PUM1	99	90.141	ENSPNYG00000009518	pum1	100	86.189	Pundamilia_nyererei
ENSGALG00000042598	PUM1	98	93.333	ENSPNAG00000026728	pum1	96	92.727	Pygocentrus_nattereri
ENSGALG00000042598	PUM1	100	96.888	ENSRNOG00000011709	Pum1	100	96.888	Rattus_norvegicus
ENSGALG00000042598	PUM1	100	97.896	ENSRBIG00000042521	PUM1	100	98.792	Rhinopithecus_bieti
ENSGALG00000042598	PUM1	100	97.813	ENSRROG00000020156	PUM1	100	98.309	Rhinopithecus_roxellana
ENSGALG00000042598	PUM1	100	97.813	ENSSBOG00000032037	PUM1	100	98.309	Saimiri_boliviensis_boliviensis
ENSGALG00000042598	PUM1	99	99.393	ENSSHAG00000010918	PUM1	100	97.733	Sarcophilus_harrisii
ENSGALG00000042598	PUM1	99	90.342	ENSSMAG00000010918	pum1	100	91.566	Scophthalmus_maximus
ENSGALG00000042598	PUM1	99	90.141	ENSSDUG00000009021	pum1	96	90.141	Seriola_dumerili
ENSGALG00000042598	PUM1	95	90.141	ENSSLDG00000009667	pum1	96	90.141	Seriola_lalandi_dorsalis
ENSGALG00000042598	PUM1	97	97.088	ENSSARG00000003055	PUM1	91	97.088	Sorex_araneus
ENSGALG00000042598	PUM1	99	99.798	ENSSPUG00000006267	PUM1	100	98.570	Sphenodon_punctatus
ENSGALG00000042598	PUM1	99	90.342	ENSSPAG00000016636	pum1	100	91.566	Stegastes_partitus
ENSGALG00000042598	PUM1	100	98.381	ENSSSCG00000003591	PUM1	100	99.034	Sus_scrofa
ENSGALG00000042598	PUM1	99	90.141	ENSTRUG00000013121	pum1	96	90.141	Takifugu_rubripes
ENSGALG00000042598	PUM1	99	89.960	ENSTNIG00000016983	pum1	96	89.960	Tetraodon_nigroviridis
ENSGALG00000042598	PUM1	90	93.902	ENSTBEG00000013810	PUM1	89	93.902	Tupaia_belangeri
ENSGALG00000042598	PUM1	92	97.903	ENSTTRG00000007436	PUM1	90	97.903	Tursiops_truncatus
ENSGALG00000042598	PUM1	99	97.327	ENSUAMG00000018262	-	100	97.327	Ursus_americanus
ENSGALG00000042598	PUM1	95	99.194	ENSUMAG00000009211	PUM1	100	99.194	Ursus_maritimus
ENSGALG00000042598	PUM1	92	98.756	ENSVPAG00000005902	PUM1	92	98.756	Vicugna_pacos
ENSGALG00000042598	PUM1	100	98.079	ENSVVUG00000014631	PUM1	100	99.034	Vulpes_vulpes
ENSGALG00000042598	PUM1	99	91.093	ENSXETG00000012904	pum1	99	87.657	Xenopus_tropicalis
ENSGALG00000042598	PUM1	99	89.940	ENSXMAG00000002945	pum1	96	89.940	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000932	P-body	-	ISS	Component
GO:0003730	mRNA 3'-UTR binding	-	ISS	Function
GO:0005737	cytoplasm	-	ISS	Component
GO:0005829	cytosol	-	IEA	Component
GO:0007283	spermatogenesis	-	ISS	Process
GO:0008344	adult locomotory behavior	-	ISS	Process
GO:0010494	cytoplasmic stress granule	-	IEA	Component
GO:0016441	posttranscriptional gene silencing	-	ISS	Process
GO:0016607	nuclear speck	-	IEA	Component
GO:0035196	production of miRNAs involved in gene silencing by miRNA	-	IEA	Process
GO:0035198	miRNA binding	-	IEA	Function
GO:0048863	stem cell differentiation	-	ISS	Process
GO:0051726	regulation of cell cycle	-	ISS	Process
GO:0051983	regulation of chromosome segregation	-	IEA	Process
GO:0061157	mRNA destabilization	-	ISS	Process
GO:1900246	positive regulation of RIG-I signaling pathway	-	IEA	Process
GO:2000637	positive regulation of gene silencing by miRNA	-	ISS	Process