EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGMOG00000000796 (Gene tree)
Gene ID: -
Gene Symbol: cpsf1
Alias: wu:fb24c01
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Gadus_morhua
Status: putative
Strand: Minus strand
Length: 26290 bases
Position: chrGeneScaffold_1783:60049-86338
Accession: ZDB-GENE-040709-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGMOP00000000852	CPSF_A	PF03178.15	3e-91	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGMOT00000000886	-	4329	-	ENSGMOP00000000852	1442 (aa)	-	UPI00023EF72A

Gene Model

Click here to download ENSGMOG00000000796's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGMOG00000000796's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGMOG00000000796	cpsf1	100	77.793	ENSG00000071894	CPSF1	100	78.704	Homo_sapiens
ENSGMOG00000000796	cpsf1	100	86.293	ENSAPOG00000019621	cpsf1	100	86.158	Acanthochromis_polyacanthus
ENSGMOG00000000796	cpsf1	97	76.671	ENSAMEG00000005557	CPSF1	99	76.404	Ailuropoda_melanoleuca
ENSGMOG00000000796	cpsf1	100	85.990	ENSACIG00000006112	cpsf1	100	85.754	Amphilophus_citrinellus
ENSGMOG00000000796	cpsf1	100	87.225	ENSAOCG00000007120	cpsf1	100	86.745	Amphiprion_ocellaris
ENSGMOG00000000796	cpsf1	100	87.363	ENSAPEG00000005755	cpsf1	100	87.114	Amphiprion_percula
ENSGMOG00000000796	cpsf1	100	86.379	ENSATEG00000011097	cpsf1	100	86.244	Anabas_testudineus
ENSGMOG00000000796	cpsf1	93	73.907	ENSACAG00000009655	CPSF1	100	73.536	Anolis_carolinensis
ENSGMOG00000000796	cpsf1	100	78.345	ENSANAG00000036514	CPSF1	100	78.069	Aotus_nancymaae
ENSGMOG00000000796	cpsf1	99	86.085	ENSACLG00000012231	cpsf1	99	85.945	Astatotilapia_calliptera
ENSGMOG00000000796	cpsf1	100	79.158	ENSAMXG00000008485	cpsf1	100	78.813	Astyanax_mexicanus
ENSGMOG00000000796	cpsf1	100	76.809	ENSBTAG00000008355	CPSF1	100	77.396	Bos_taurus
ENSGMOG00000000796	cpsf1	100	32.740	WBGene00022301	cpsf-1	99	40.678	Caenorhabditis_elegans
ENSGMOG00000000796	cpsf1	100	78.429	ENSCJAG00000021421	CPSF1	100	78.015	Callithrix_jacchus
ENSGMOG00000000796	cpsf1	97	78.267	ENSCAFG00000001600	CPSF1	100	78.047	Canis_familiaris
ENSGMOG00000000796	cpsf1	100	78.114	ENSCAFG00020020821	CPSF1	100	78.045	Canis_lupus_dingo
ENSGMOG00000000796	cpsf1	100	74.431	ENSCHIG00000015833	CPSF1	100	74.294	Capra_hircus
ENSGMOG00000000796	cpsf1	100	78.429	ENSTSYG00000028560	CPSF1	100	79.167	Carlito_syrichta
ENSGMOG00000000796	cpsf1	97	77.438	ENSCAPG00000014921	CPSF1	99	77.224	Cavia_aperea
ENSGMOG00000000796	cpsf1	100	76.997	ENSCPOG00000011448	CPSF1	100	76.791	Cavia_porcellus
ENSGMOG00000000796	cpsf1	100	78.498	ENSCCAG00000037658	CPSF1	100	78.899	Cebus_capucinus
ENSGMOG00000000796	cpsf1	100	78.000	ENSCATG00000037234	CPSF1	100	78.704	Cercocebus_atys
ENSGMOG00000000796	cpsf1	100	78.360	ENSCLAG00000012166	CPSF1	100	78.153	Chinchilla_lanigera
ENSGMOG00000000796	cpsf1	100	78.153	ENSCSAG00000008502	CPSF1	100	77.839	Chlorocebus_sabaeus
ENSGMOG00000000796	cpsf1	99	79.749	ENSCPBG00000018910	CPSF1	96	79.375	Chrysemys_picta_bellii
ENSGMOG00000000796	cpsf1	96	48.639	ENSCING00000000514	-	100	48.352	Ciona_intestinalis
ENSGMOG00000000796	cpsf1	99	48.697	ENSCSAVG00000002293	-	99	49.767	Ciona_savignyi
ENSGMOG00000000796	cpsf1	99	74.530	ENSCANG00000032760	CPSF1	100	79.167	Colobus_angolensis_palliatus
ENSGMOG00000000796	cpsf1	100	78.222	ENSCGRG00001016344	Cpsf1	100	78.015	Cricetulus_griseus_chok1gshd
ENSGMOG00000000796	cpsf1	100	76.361	ENSCGRG00000003118	Cpsf1	100	76.154	Cricetulus_griseus_crigri
ENSGMOG00000000796	cpsf1	100	85.239	ENSCSEG00000013464	cpsf1	100	85.170	Cynoglossus_semilaevis
ENSGMOG00000000796	cpsf1	85	82.955	ENSCVAG00000014059	cpsf1	100	80.093	Cyprinodon_variegatus
ENSGMOG00000000796	cpsf1	100	85.842	ENSDARG00000034178	cpsf1	100	85.911	Danio_rerio
ENSGMOG00000000796	cpsf1	56	80.636	ENSDNOG00000043654	CPSF1	99	80.636	Dasypus_novemcinctus
ENSGMOG00000000796	cpsf1	97	77.976	ENSDORG00000006278	Cpsf1	99	77.683	Dipodomys_ordii
ENSGMOG00000000796	cpsf1	100	44.474	FBgn0024698	Cpsf160	100	44.527	Drosophila_melanogaster
ENSGMOG00000000796	cpsf1	80	82.550	ENSETEG00000006022	CPSF1	83	82.550	Echinops_telfairi
ENSGMOG00000000796	cpsf1	100	78.252	ENSEASG00005010774	CPSF1	100	78.114	Equus_asinus_asinus
ENSGMOG00000000796	cpsf1	100	78.183	ENSECAG00000022209	CPSF1	100	78.045	Equus_caballus
ENSGMOG00000000796	cpsf1	100	77.717	ENSEEUG00000000471	CPSF1	100	77.510	Erinaceus_europaeus
ENSGMOG00000000796	cpsf1	100	85.695	ENSELUG00000012271	cpsf1	100	85.714	Esox_lucius
ENSGMOG00000000796	cpsf1	100	78.498	ENSFDAG00000016060	CPSF1	100	78.291	Fukomys_damarensis
ENSGMOG00000000796	cpsf1	100	85.114	ENSFHEG00000016801	cpsf1	100	85.045	Fundulus_heteroclitus
ENSGMOG00000000796	cpsf1	97	83.677	ENSGAFG00000018890	cpsf1	99	91.071	Gambusia_affinis
ENSGMOG00000000796	cpsf1	100	88.094	ENSGACG00000008703	cpsf1	100	87.887	Gasterosteus_aculeatus
ENSGMOG00000000796	cpsf1	100	77.050	ENSGAGG00000004276	CPSF1	92	88.235	Gopherus_agassizii
ENSGMOG00000000796	cpsf1	100	78.069	ENSGGOG00000016185	CPSF1	100	78.704	Gorilla_gorilla
ENSGMOG00000000796	cpsf1	100	87.474	ENSHBUG00000018900	cpsf1	100	87.474	Haplochromis_burtoni
ENSGMOG00000000796	cpsf1	100	78.429	ENSHGLG00000016139	CPSF1	100	78.222	Heterocephalus_glaber_female
ENSGMOG00000000796	cpsf1	100	78.360	ENSHGLG00100009750	CPSF1	100	78.153	Heterocephalus_glaber_male
ENSGMOG00000000796	cpsf1	100	85.047	ENSHCOG00000018509	cpsf1	100	85.153	Hippocampus_comes
ENSGMOG00000000796	cpsf1	100	82.305	ENSIPUG00000011259	cpsf1	100	82.030	Ictalurus_punctatus
ENSGMOG00000000796	cpsf1	97	77.573	ENSSTOG00000009957	CPSF1	99	77.589	Ictidomys_tridecemlineatus
ENSGMOG00000000796	cpsf1	100	78.291	ENSJJAG00000023002	Cpsf1	100	78.084	Jaculus_jaculus
ENSGMOG00000000796	cpsf1	91	89.342	ENSKMAG00000001940	cpsf1	99	89.342	Kryptolebias_marmoratus
ENSGMOG00000000796	cpsf1	100	86.662	ENSLBEG00000003601	cpsf1	100	86.527	Labrus_bergylta
ENSGMOG00000000796	cpsf1	87	77.273	ENSLACG00000000233	CPSF1	92	77.273	Latimeria_chalumnae
ENSGMOG00000000796	cpsf1	100	80.988	ENSLOCG00000008484	cpsf1	100	80.782	Lepisosteus_oculatus
ENSGMOG00000000796	cpsf1	97	78.236	ENSLAFG00000022601	CPSF1	99	77.999	Loxodonta_africana
ENSGMOG00000000796	cpsf1	100	78.069	ENSMFAG00000037013	CPSF1	100	78.704	Macaca_fascicularis
ENSGMOG00000000796	cpsf1	100	78.069	ENSMMUG00000007380	CPSF1	98	81.150	Macaca_mulatta
ENSGMOG00000000796	cpsf1	97	78.429	ENSMNEG00000043564	CPSF1	100	78.704	Macaca_nemestrina
ENSGMOG00000000796	cpsf1	100	78.069	ENSMLEG00000043010	CPSF1	100	78.704	Mandrillus_leucophaeus
ENSGMOG00000000796	cpsf1	100	86.563	ENSMAMG00000003803	cpsf1	100	86.226	Mastacembelus_armatus
ENSGMOG00000000796	cpsf1	100	84.557	ENSMZEG00005001168	cpsf1	100	84.557	Maylandia_zebra
ENSGMOG00000000796	cpsf1	100	78.084	ENSMAUG00000003601	Cpsf1	100	77.877	Mesocricetus_auratus
ENSGMOG00000000796	cpsf1	100	78.360	ENSMICG00000015767	CPSF1	100	77.992	Microcebus_murinus
ENSGMOG00000000796	cpsf1	100	78.207	ENSMOCG00000022758	Cpsf1	100	78.000	Microtus_ochrogaster
ENSGMOG00000000796	cpsf1	100	87.059	ENSMMOG00000021245	cpsf1	100	86.713	Mola_mola
ENSGMOG00000000796	cpsf1	100	78.273	ENSMODG00000010755	CPSF1	100	78.249	Monodelphis_domestica
ENSGMOG00000000796	cpsf1	100	86.275	ENSMALG00000020545	cpsf1	100	86.342	Monopterus_albus
ENSGMOG00000000796	cpsf1	100	78.360	MGP_CAROLIEiJ_G0019936	Cpsf1	100	78.153	Mus_caroli
ENSGMOG00000000796	cpsf1	100	78.360	ENSMUSG00000034022	Cpsf1	100	78.153	Mus_musculus
ENSGMOG00000000796	cpsf1	100	78.429	MGP_PahariEiJ_G0019946	Cpsf1	100	78.222	Mus_pahari
ENSGMOG00000000796	cpsf1	100	78.429	MGP_SPRETEiJ_G0020839	Cpsf1	100	78.222	Mus_spretus
ENSGMOG00000000796	cpsf1	94	78.335	ENSMPUG00000006419	CPSF1	93	78.335	Mustela_putorius_furo
ENSGMOG00000000796	cpsf1	100	78.168	ENSNGAG00000022460	Cpsf1	100	77.961	Nannospalax_galili
ENSGMOG00000000796	cpsf1	100	82.723	ENSNBRG00000000813	cpsf1	100	82.536	Neolamprologus_brichardi
ENSGMOG00000000796	cpsf1	86	66.667	ENSNLEG00000010633	-	100	78.704	Nomascus_leucogenys
ENSGMOG00000000796	cpsf1	82	86.047	ENSMEUG00000014922	CPSF1	85	86.047	Notamacropus_eugenii
ENSGMOG00000000796	cpsf1	60	85.714	ENSOPRG00000004693	-	69	85.714	Ochotona_princeps
ENSGMOG00000000796	cpsf1	100	78.429	ENSODEG00000013995	CPSF1	100	78.222	Octodon_degus
ENSGMOG00000000796	cpsf1	100	87.526	ENSONIG00000007676	cpsf1	100	86.942	Oreochromis_niloticus
ENSGMOG00000000796	cpsf1	58	74.286	ENSOANG00000010716	CPSF1	88	74.286	Ornithorhynchus_anatinus
ENSGMOG00000000796	cpsf1	100	85.220	ENSORLG00000013544	cpsf1	100	85.394	Oryzias_latipes
ENSGMOG00000000796	cpsf1	100	85.288	ENSORLG00020021693	cpsf1	100	85.462	Oryzias_latipes_hni
ENSGMOG00000000796	cpsf1	100	85.288	ENSORLG00015009979	cpsf1	100	85.462	Oryzias_latipes_hsok
ENSGMOG00000000796	cpsf1	100	84.793	ENSOMEG00000011849	cpsf1	100	84.422	Oryzias_melastigma
ENSGMOG00000000796	cpsf1	100	78.498	ENSOGAG00000000315	CPSF1	100	78.222	Otolemur_garnettii
ENSGMOG00000000796	cpsf1	100	78.069	ENSPPAG00000019280	CPSF1	100	80.093	Pan_paniscus
ENSGMOG00000000796	cpsf1	100	78.069	ENSPTRG00000049288	-	100	80.093	Pan_troglodytes
ENSGMOG00000000796	cpsf1	100	76.746	ENSPTRG00000051253	-	100	80.093	Pan_troglodytes
ENSGMOG00000000796	cpsf1	97	78.429	ENSPANG00000015005	CPSF1	100	78.704	Papio_anubis
ENSGMOG00000000796	cpsf1	100	85.262	ENSPKIG00000002582	cpsf1	100	85.272	Paramormyrops_kingsleyae
ENSGMOG00000000796	cpsf1	100	78.478	ENSPCIG00000009035	CPSF1	100	78.454	Phascolarctos_cinereus
ENSGMOG00000000796	cpsf1	100	84.527	ENSPFOG00000012870	cpsf1	100	84.257	Poecilia_formosa
ENSGMOG00000000796	cpsf1	100	84.324	ENSPREG00000016307	cpsf1	100	84.392	Poecilia_reticulata
ENSGMOG00000000796	cpsf1	100	71.261	ENSPPYG00000018973	CPSF1	100	71.094	Pongo_abelii
ENSGMOG00000000796	cpsf1	91	83.239	ENSPCAG00000011541	CPSF1	94	83.239	Procavia_capensis
ENSGMOG00000000796	cpsf1	100	74.966	ENSPCOG00000020001	CPSF1	100	78.241	Propithecus_coquereli
ENSGMOG00000000796	cpsf1	90	85.714	ENSPVAG00000006761	CPSF1	91	85.714	Pteropus_vampyrus
ENSGMOG00000000796	cpsf1	100	86.284	ENSPNYG00000004906	cpsf1	100	86.270	Pundamilia_nyererei
ENSGMOG00000000796	cpsf1	100	80.966	ENSPNAG00000024395	cpsf1	100	80.483	Pygocentrus_nattereri
ENSGMOG00000000796	cpsf1	100	78.360	ENSRNOG00000030705	Cpsf1	100	78.153	Rattus_norvegicus
ENSGMOG00000000796	cpsf1	100	77.931	ENSRBIG00000044907	CPSF1	100	79.167	Rhinopithecus_bieti
ENSGMOG00000000796	cpsf1	100	78.000	ENSRROG00000044861	CPSF1	100	79.167	Rhinopithecus_roxellana
ENSGMOG00000000796	cpsf1	97	78.658	ENSSBOG00000027177	CPSF1	99	78.230	Saimiri_boliviensis_boliviensis
ENSGMOG00000000796	cpsf1	100	78.136	ENSSHAG00000006500	CPSF1	100	78.157	Sarcophilus_harrisii
ENSGMOG00000000796	cpsf1	100	82.680	ENSSFOG00015004606	cpsf1	100	85.102	Scleropages_formosus
ENSGMOG00000000796	cpsf1	100	86.883	ENSSMAG00000020547	cpsf1	100	87.153	Scophthalmus_maximus
ENSGMOG00000000796	cpsf1	100	87.906	ENSSDUG00000001100	cpsf1	100	87.759	Seriola_dumerili
ENSGMOG00000000796	cpsf1	100	87.906	ENSSLDG00000003619	cpsf1	100	87.690	Seriola_lalandi_dorsalis
ENSGMOG00000000796	cpsf1	89	74.719	ENSSARG00000003643	CPSF1	92	74.297	Sorex_araneus
ENSGMOG00000000796	cpsf1	96	80.143	ENSSPUG00000014396	CPSF1	100	79.713	Sphenodon_punctatus
ENSGMOG00000000796	cpsf1	100	86.351	ENSSPAG00000005349	cpsf1	100	86.486	Stegastes_partitus
ENSGMOG00000000796	cpsf1	100	77.739	ENSSSCG00000005906	CPSF1	100	77.533	Sus_scrofa
ENSGMOG00000000796	cpsf1	96	85.364	ENSTRUG00000013134	cpsf1	99	84.944	Takifugu_rubripes
ENSGMOG00000000796	cpsf1	100	86.136	ENSTNIG00000014027	cpsf1	100	85.724	Tetraodon_nigroviridis
ENSGMOG00000000796	cpsf1	77	72.945	ENSTBEG00000001756	CPSF1	91	71.918	Tupaia_belangeri
ENSGMOG00000000796	cpsf1	89	82.069	ENSTTRG00000001937	CPSF1	90	82.069	Tursiops_truncatus
ENSGMOG00000000796	cpsf1	97	78.378	ENSUAMG00000006476	CPSF1	98	78.109	Ursus_americanus
ENSGMOG00000000796	cpsf1	100	85.093	ENSXCOG00000003608	cpsf1	100	85.114	Xiphophorus_couchianus
ENSGMOG00000000796	cpsf1	100	84.509	ENSXMAG00000005798	cpsf1	100	84.807	Xiphophorus_maculatus