EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGMOG00000000869 (Gene tree)
Gene ID: -
Gene Symbol: srsf5a
Alias: fb49e01|im:6906390|sfrs5|sfrs5a|wu:fb49e01|wu:fj09b12
Full Name: serine/arginine-rich splicing factor 5a
Gene Type: protein_coding
Species: Gadus_morhua
Status: putative
Strand: Minus strand
Length: 3524 bases
Position: chrGeneScaffold_3467:1179-4702
Accession: ZDB-GENE-030131-7336
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGMOP00000000883	RRM_5	PF13893.6	5.7e-07	1	2
ENSGMOP00000000883	RRM_5	PF13893.6	5.7e-07	2	2
ENSGMOP00000000883	RRM_1	PF00076.22	1.4e-33	1	2
ENSGMOP00000000883	RRM_1	PF00076.22	1.4e-33	2	2
ENSGMOP00000000883	RRM_3	PF08777.11	1e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGMOT00000000918	-	564	-	ENSGMOP00000000883	188 (aa)	-	UPI00023EF77B

Gene Model

Click here to download ENSGMOG00000000869's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGMOG00000000869's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGMOG00000000869	srsf5a	96	55.310	ENSGMOG00000000595	srsf5b	97	57.207
ENSGMOG00000000869	srsf5a	86	43.452	ENSGMOG00000014787	-	68	41.765
ENSGMOG00000000869	srsf5a	91	41.243	ENSGMOG00000010606	-	91	41.808
ENSGMOG00000000869	srsf5a	95	37.895	ENSGMOG00000007980	srsf9	74	37.500
ENSGMOG00000000869	srsf5a	53	38.835	ENSGMOG00000000944	-	96	38.835
ENSGMOG00000000869	srsf5a	92	62.921	ENSGMOG00000014458	srsf6a	51	58.824
ENSGMOG00000000869	srsf5a	90	64.118	ENSGMOG00000006105	srsf6a	61	64.118
ENSGMOG00000000869	srsf5a	93	61.932	ENSGMOG00000012906	srsf4	55	61.932

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGMOG00000000869	srsf5a	94	86.413	ENSAPOG00000017395	srsf5a	62	89.674	Acanthochromis_polyacanthus
ENSGMOG00000000869	srsf5a	94	86.096	ENSACIG00000011892	srsf5a	96	82.090	Amphilophus_citrinellus
ENSGMOG00000000869	srsf5a	94	85.792	ENSAOCG00000014967	srsf5a	62	90.164	Amphiprion_ocellaris
ENSGMOG00000000869	srsf5a	94	85.792	ENSAPEG00000009297	srsf5a	62	90.164	Amphiprion_percula
ENSGMOG00000000869	srsf5a	94	88.235	ENSATEG00000000198	srsf5a	65	88.770	Anabas_testudineus
ENSGMOG00000000869	srsf5a	94	73.596	ENSAPLG00000002469	-	70	76.536	Anas_platyrhynchos
ENSGMOG00000000869	srsf5a	94	77.528	ENSACAG00000029015	-	68	76.966	Anolis_carolinensis
ENSGMOG00000000869	srsf5a	94	84.293	ENSACLG00000027166	srsf5a	65	84.293	Astatotilapia_calliptera
ENSGMOG00000000869	srsf5a	94	86.486	ENSAMXG00000030476	srsf5a	67	85.946	Astyanax_mexicanus
ENSGMOG00000000869	srsf5a	94	79.888	ENSCPBG00000021518	-	70	77.095	Chrysemys_picta_bellii
ENSGMOG00000000869	srsf5a	94	51.531	ENSCSAVG00000011376	-	78	53.061	Ciona_savignyi
ENSGMOG00000000869	srsf5a	94	83.938	ENSCSEG00000008109	srsf5a	62	83.938	Cynoglossus_semilaevis
ENSGMOG00000000869	srsf5a	93	75.661	ENSCVAG00000016982	srsf5a	97	73.134	Cyprinodon_variegatus
ENSGMOG00000000869	srsf5a	96	85.638	ENSDARG00000029818	srsf5a	100	80.451	Danio_rerio
ENSGMOG00000000869	srsf5a	94	79.793	ENSELUG00000020439	srsf5a	62	80.311	Esox_lucius
ENSGMOG00000000869	srsf5a	94	76.271	ENSFALG00000005098	-	64	77.401	Ficedula_albicollis
ENSGMOG00000000869	srsf5a	94	78.531	ENSFHEG00000003955	srsf5a	97	70.345	Fundulus_heteroclitus
ENSGMOG00000000869	srsf5a	94	77.966	ENSGALG00000033259	SRSF5A	63	76.836	Gallus_gallus
ENSGMOG00000000869	srsf5a	94	77.966	ENSGAFG00000018237	srsf5a	54	76.374	Gambusia_affinis
ENSGMOG00000000869	srsf5a	94	91.573	ENSGACG00000011761	srsf5a	70	89.326	Gasterosteus_aculeatus
ENSGMOG00000000869	srsf5a	94	79.888	ENSGAGG00000007312	-	70	77.095	Gopherus_agassizii
ENSGMOG00000000869	srsf5a	94	84.737	ENSHBUG00000014048	srsf5a	64	84.737	Haplochromis_burtoni
ENSGMOG00000000869	srsf5a	94	86.022	ENSHCOG00000017557	srsf5a	62	87.634	Hippocampus_comes
ENSGMOG00000000869	srsf5a	94	82.105	ENSIPUG00000003439	srsf5a	69	82.105	Ictalurus_punctatus
ENSGMOG00000000869	srsf5a	94	79.255	ENSKMAG00000014937	srsf5a	58	79.787	Kryptolebias_marmoratus
ENSGMOG00000000869	srsf5a	94	81.026	ENSLBEG00000017153	srsf5a	74	80.513	Labrus_bergylta
ENSGMOG00000000869	srsf5a	94	82.778	ENSLACG00000017874	-	70	83.333	Latimeria_chalumnae
ENSGMOG00000000869	srsf5a	94	84.865	ENSLOCG00000014075	srsf5a	61	84.865	Lepisosteus_oculatus
ENSGMOG00000000869	srsf5a	94	90.608	ENSMAMG00000000192	srsf5a	65	90.608	Mastacembelus_armatus
ENSGMOG00000000869	srsf5a	94	84.737	ENSMZEG00005010485	srsf5a	64	84.737	Maylandia_zebra
ENSGMOG00000000869	srsf5a	100	76.190	ENSMGAG00000011888	-	96	77.987	Meleagris_gallopavo
ENSGMOG00000000869	srsf5a	94	90.000	ENSMMOG00000009793	srsf5a	61	90.000	Mola_mola
ENSGMOG00000000869	srsf5a	94	86.441	ENSMALG00000021194	srsf5a	63	85.876	Monopterus_albus
ENSGMOG00000000869	srsf5a	94	85.185	ENSNBRG00000000771	srsf5a	64	85.185	Neolamprologus_brichardi
ENSGMOG00000000869	srsf5a	94	85.185	ENSONIG00000019583	srsf5a	64	85.185	Oreochromis_niloticus
ENSGMOG00000000869	srsf5a	96	87.500	ENSORLG00000009268	srsf5a	67	87.912	Oryzias_latipes
ENSGMOG00000000869	srsf5a	96	87.500	ENSORLG00020003281	srsf5	67	87.912	Oryzias_latipes_hni
ENSGMOG00000000869	srsf5a	96	87.500	ENSORLG00015023075	srsf5	67	87.912	Oryzias_latipes_hsok
ENSGMOG00000000869	srsf5a	94	86.667	ENSOMEG00000000628	srsf5a	66	87.222	Oryzias_melastigma
ENSGMOG00000000869	srsf5a	94	85.484	ENSPKIG00000002054	srsf5a	68	86.022	Paramormyrops_kingsleyae
ENSGMOG00000000869	srsf5a	94	79.213	ENSPSIG00000008238	-	69	79.213	Pelodiscus_sinensis
ENSGMOG00000000869	srsf5a	95	80.000	ENSPMGG00000020125	srsf5a	55	79.781	Periophthalmus_magnuspinnatus
ENSGMOG00000000869	srsf5a	94	78.534	ENSPFOG00000022993	srsf5a	60	79.581	Poecilia_formosa
ENSGMOG00000000869	srsf5a	94	78.421	ENSPLAG00000005508	srsf5a	59	79.474	Poecilia_latipinna
ENSGMOG00000000869	srsf5a	94	78.534	ENSPMEG00000016339	srsf5a	60	79.581	Poecilia_mexicana
ENSGMOG00000000869	srsf5a	94	78.125	ENSPREG00000018091	srsf5a	61	79.167	Poecilia_reticulata
ENSGMOG00000000869	srsf5a	94	84.737	ENSPNYG00000021245	srsf5a	64	84.737	Pundamilia_nyererei
ENSGMOG00000000869	srsf5a	94	85.870	ENSPNAG00000021333	srsf5a	66	85.870	Pygocentrus_nattereri
ENSGMOG00000000869	srsf5a	94	84.946	ENSSFOG00015008377	srsf5	66	87.097	Scleropages_formosus
ENSGMOG00000000869	srsf5a	94	82.500	ENSSMAG00000010899	srsf5a	66	82.000	Scophthalmus_maximus
ENSGMOG00000000869	srsf5a	94	86.813	ENSSDUG00000006103	srsf5a	63	90.110	Seriola_dumerili
ENSGMOG00000000869	srsf5a	94	87.363	ENSSLDG00000004146	srsf5a	63	90.659	Seriola_lalandi_dorsalis
ENSGMOG00000000869	srsf5a	94	75.843	ENSSPUG00000002052	-	68	75.978	Sphenodon_punctatus
ENSGMOG00000000869	srsf5a	94	86.339	ENSSPAG00000002821	srsf5a	63	90.164	Stegastes_partitus
ENSGMOG00000000869	srsf5a	94	77.401	ENSTGUG00000011492	-	68	77.401	Taeniopygia_guttata
ENSGMOG00000000869	srsf5a	94	81.771	ENSTRUG00000022908	srsf5a	65	81.771	Takifugu_rubripes
ENSGMOG00000000869	srsf5a	94	76.596	ENSXETG00000017937	srsf5a	72	74.468	Xenopus_tropicalis
ENSGMOG00000000869	srsf5a	94	78.610	ENSXCOG00000015338	srsf5a	61	78.610	Xiphophorus_couchianus
ENSGMOG00000000869	srsf5a	94	77.720	ENSXMAG00000012823	srsf5a	61	78.756	Xiphophorus_maculatus