EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGMOG00000001160 (Gene tree)
Gene ID: -
Gene Symbol: trnau1apb
Alias: secp43|trnau1ap|trnau1apl|trspap1|wu:fa56b07|wu:fc12c07|wu:fc69f09|zgc:113964|zgc:77884
Full Name: tRNA selenocysteine 1 associated protein 1b
Gene Type: protein_coding
Species: Gadus_morhua
Status: putative
Strand: Plus strand
Length: 10146 bases
Position: chrGeneScaffold_2506:3020-13165
Accession: ZDB-GENE-040426-2386
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGMOP00000001214	RRM_5	PF13893.6	2.7e-06	1	2
ENSGMOP00000001214	RRM_5	PF13893.6	2.7e-06	2	2
ENSGMOP00000001214	RRM_1	PF00076.22	9.9e-30	1	2
ENSGMOP00000001214	RRM_1	PF00076.22	9.9e-30	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGMOT00000001260	-	1005	-	ENSGMOP00000001214	334 (aa)	-	UPI00023EF92A

Gene Model

Click here to download ENSGMOG00000001160's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGMOG00000001160's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGMOG00000001160	trnau1apb	95	38.462	ENSGMOG00000016508	trnau1apa	93	39.877
ENSGMOG00000001160	trnau1apb	53	30.409	ENSGMOG00000008843	tia1	78	30.409

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGMOG00000001160	trnau1apb	100	67.160	ENSAPOG00000010086	trnau1apb	100	63.143	Acanthochromis_polyacanthus
ENSGMOG00000001160	trnau1apb	100	74.328	ENSACIG00000001863	trnau1apb	100	73.433	Amphilophus_citrinellus
ENSGMOG00000001160	trnau1apb	100	75.660	ENSAOCG00000011891	trnau1apb	100	71.469	Amphiprion_ocellaris
ENSGMOG00000001160	trnau1apb	100	74.260	ENSAPEG00000008029	trnau1apb	100	72.286	Amphiprion_percula
ENSGMOG00000001160	trnau1apb	100	75.660	ENSATEG00000002196	trnau1apb	100	71.751	Anabas_testudineus
ENSGMOG00000001160	trnau1apb	100	73.021	ENSACLG00000003016	trnau1apb	100	72.141	Astatotilapia_calliptera
ENSGMOG00000001160	trnau1apb	99	61.747	ENSAMXG00000001805	trnau1apb	98	61.631	Astyanax_mexicanus
ENSGMOG00000001160	trnau1apb	98	70.326	ENSCSEG00000018215	trnau1apb	97	68.116	Cynoglossus_semilaevis
ENSGMOG00000001160	trnau1apb	95	69.817	ENSCVAG00000017866	trnau1apb	100	65.982	Cyprinodon_variegatus
ENSGMOG00000001160	trnau1apb	99	60.896	ENSDARG00000056475	trnau1apb	97	64.350	Danio_rerio
ENSGMOG00000001160	trnau1apb	69	75.758	ENSELUG00000016683	trnau1apb	98	64.759	Esox_lucius
ENSGMOG00000001160	trnau1apb	100	70.809	ENSFHEG00000001267	trnau1apb	99	67.131	Fundulus_heteroclitus
ENSGMOG00000001160	trnau1apb	53	89.831	ENSGAFG00000006770	trnau1apb	100	62.865	Gambusia_affinis
ENSGMOG00000001160	trnau1apb	100	73.669	ENSGACG00000014944	trnau1apb	100	72.126	Gasterosteus_aculeatus
ENSGMOG00000001160	trnau1apb	70	38.136	ENSGAGG00000022384	-	77	37.288	Gopherus_agassizii
ENSGMOG00000001160	trnau1apb	100	74.194	ENSHBUG00000018944	trnau1apb	100	70.448	Haplochromis_burtoni
ENSGMOG00000001160	trnau1apb	69	78.879	ENSHCOG00000011350	trnau1apb	76	76.250	Hippocampus_comes
ENSGMOG00000001160	trnau1apb	99	58.284	ENSIPUG00000008843	tsp1l	99	62.840	Ictalurus_punctatus
ENSGMOG00000001160	trnau1apb	66	87.671	ENSKMAG00000010082	trnau1apb	99	68.258	Kryptolebias_marmoratus
ENSGMOG00000001160	trnau1apb	100	69.828	ENSLBEG00000020480	trnau1apb	100	70.231	Labrus_bergylta
ENSGMOG00000001160	trnau1apb	99	52.096	ENSLOCG00000013175	trnau1apb	97	52.108	Lepisosteus_oculatus
ENSGMOG00000001160	trnau1apb	99	73.964	ENSMAMG00000012192	trnau1apb	99	70.857	Mastacembelus_armatus
ENSGMOG00000001160	trnau1apb	100	74.194	ENSMZEG00005014852	trnau1apb	99	69.492	Maylandia_zebra
ENSGMOG00000001160	trnau1apb	71	36.214	ENSMGAG00000003234	-	99	37.037	Meleagris_gallopavo
ENSGMOG00000001160	trnau1apb	97	64.943	ENSMMOG00000021521	trnau1apb	100	62.921	Mola_mola
ENSGMOG00000001160	trnau1apb	99	66.061	ENSMALG00000003772	trnau1apb	98	62.974	Monopterus_albus
ENSGMOG00000001160	trnau1apb	98	73.414	ENSNBRG00000000751	trnau1apb	99	72.508	Neolamprologus_brichardi
ENSGMOG00000001160	trnau1apb	99	69.880	ENSONIG00000016639	trnau1apb	100	68.373	Oreochromis_niloticus
ENSGMOG00000001160	trnau1apb	67	87.946	ENSORLG00000013265	trnau1apb	99	70.085	Oryzias_latipes
ENSGMOG00000001160	trnau1apb	100	72.807	ENSORLG00020004464	trnau1apb	99	70.487	Oryzias_latipes_hni
ENSGMOG00000001160	trnau1apb	100	72.807	ENSORLG00015021098	trnau1apb	99	70.201	Oryzias_latipes_hsok
ENSGMOG00000001160	trnau1apb	67	87.500	ENSOMEG00000016531	trnau1apb	99	68.994	Oryzias_melastigma
ENSGMOG00000001160	trnau1apb	54	81.967	ENSPKIG00000007995	trnau1apb	98	59.172	Paramormyrops_kingsleyae
ENSGMOG00000001160	trnau1apb	70	39.407	ENSPSIG00000004189	-	76	38.559	Pelodiscus_sinensis
ENSGMOG00000001160	trnau1apb	99	58.788	ENSPMGG00000018509	trnau1apb	93	75.417	Periophthalmus_magnuspinnatus
ENSGMOG00000001160	trnau1apb	100	71.965	ENSPFOG00000003938	trnau1apb	100	69.822	Poecilia_formosa
ENSGMOG00000001160	trnau1apb	100	71.965	ENSPLAG00000015480	trnau1apb	99	70.725	Poecilia_latipinna
ENSGMOG00000001160	trnau1apb	100	71.965	ENSPMEG00000012743	trnau1apb	99	70.725	Poecilia_mexicana
ENSGMOG00000001160	trnau1apb	100	69.275	ENSPREG00000015035	trnau1apb	69	83.264	Poecilia_reticulata
ENSGMOG00000001160	trnau1apb	100	70.381	ENSPNYG00000012127	trnau1apb	100	69.501	Pundamilia_nyererei
ENSGMOG00000001160	trnau1apb	99	58.824	ENSPNAG00000019138	trnau1apb	98	62.840	Pygocentrus_nattereri
ENSGMOG00000001160	trnau1apb	100	57.681	ENSSFOG00015014158	trnau1apb	98	61.424	Scleropages_formosus
ENSGMOG00000001160	trnau1apb	99	75.595	ENSSMAG00000001745	trnau1apb	99	71.633	Scophthalmus_maximus
ENSGMOG00000001160	trnau1apb	99	75.882	ENSSDUG00000011109	trnau1apb	99	71.955	Seriola_dumerili
ENSGMOG00000001160	trnau1apb	99	76.176	ENSSLDG00000012947	trnau1apb	99	72.238	Seriola_lalandi_dorsalis
ENSGMOG00000001160	trnau1apb	69	32.806	ENSSPUG00000016701	-	51	52.941	Sphenodon_punctatus
ENSGMOG00000001160	trnau1apb	100	75.953	ENSSPAG00000006917	trnau1apb	100	74.405	Stegastes_partitus
ENSGMOG00000001160	trnau1apb	100	70.554	ENSTRUG00000008608	trnau1apb	99	66.573	Takifugu_rubripes
ENSGMOG00000001160	trnau1apb	99	65.060	ENSTNIG00000000916	trnau1apb	100	63.253	Tetraodon_nigroviridis
ENSGMOG00000001160	trnau1apb	94	63.580	ENSXCOG00000007974	trnau1apb	94	63.580	Xiphophorus_couchianus
ENSGMOG00000001160	trnau1apb	100	70.725	ENSXMAG00000029918	trnau1apb	99	70.435	Xiphophorus_maculatus