EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGMOG00000001341 (Gene tree)
Gene ID: -
Gene Symbol: ncl
Alias: fa12d03|wu:fa12d03|zgc:152810
Full Name: nucleolin
Gene Type: protein_coding
Species: Gadus_morhua
Status: putative
Strand: Plus strand
Length: 10062 bases
Position: chrGeneScaffold_1671:978119-988180
Accession: ZDB-GENE-030131-6986
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGMOP00000001424	RRM_1	PF00076.22	2.4e-59	1	4
ENSGMOP00000001424	RRM_1	PF00076.22	2.4e-59	2	4
ENSGMOP00000001424	RRM_1	PF00076.22	2.4e-59	3	4
ENSGMOP00000001424	RRM_1	PF00076.22	2.4e-59	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGMOT00000001475	-	1854	-	ENSGMOP00000001424	618 (aa)	-	UPI00023EFF2C

Gene Model

Click here to download ENSGMOG00000001341's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGMOG00000001341's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGMOG00000001341	ncl	59	34.771	ENSGMOG00000017831	-	96	35.580
ENSGMOG00000001341	ncl	54	31.361	ENSGMOG00000005612	tial1	73	31.361
ENSGMOG00000001341	ncl	54	31.361	ENSGMOG00000008423	tia1l	68	31.361
ENSGMOG00000001341	ncl	54	30.943	ENSGMOG00000013448	pabpc1a	57	30.943
ENSGMOG00000001341	ncl	54	30.189	ENSGMOG00000002448	-	61	30.189
ENSGMOG00000001341	ncl	54	30.566	ENSGMOG00000019025	pabpc4	58	30.189

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGMOG00000001341	ncl	78	37.452	ENSAPOG00000014534	-	69	41.000	Acanthochromis_polyacanthus
ENSGMOG00000001341	ncl	59	69.519	ENSAPOG00000023888	ncl	71	69.816	Acanthochromis_polyacanthus
ENSGMOG00000001341	ncl	59	67.120	ENSACIG00000013234	ncl	63	67.467	Amphilophus_citrinellus
ENSGMOG00000001341	ncl	59	69.251	ENSAOCG00000003133	ncl	68	69.554	Amphiprion_ocellaris
ENSGMOG00000001341	ncl	76	38.000	ENSAOCG00000014792	-	63	41.147	Amphiprion_ocellaris
ENSGMOG00000001341	ncl	59	69.251	ENSAPEG00000002769	ncl	67	69.554	Amphiprion_percula
ENSGMOG00000001341	ncl	76	37.800	ENSAPEG00000013612	-	63	40.898	Amphiprion_percula
ENSGMOG00000001341	ncl	72	68.026	ENSATEG00000013343	ncl	54	71.129	Anabas_testudineus
ENSGMOG00000001341	ncl	69	40.879	ENSATEG00000019862	-	82	43.392	Anabas_testudineus
ENSGMOG00000001341	ncl	64	60.723	ENSAMXG00000001647	ncl	83	62.460	Astyanax_mexicanus
ENSGMOG00000001341	ncl	57	40.782	ENSCHIG00000012665	-	62	37.972	Capra_hircus
ENSGMOG00000001341	ncl	60	57.592	ENSCPBG00000016444	-	57	58.247	Chrysemys_picta_bellii
ENSGMOG00000001341	ncl	59	67.639	ENSCSEG00000015089	ncl	78	67.969	Cynoglossus_semilaevis
ENSGMOG00000001341	ncl	58	66.216	ENSCVAG00000012600	ncl	69	66.667	Cyprinodon_variegatus
ENSGMOG00000001341	ncl	66	64.762	ENSDARG00000002710	ncl	82	65.506	Danio_rerio
ENSGMOG00000001341	ncl	71	40.498	ENSDNOG00000031611	-	69	44.149	Dasypus_novemcinctus
ENSGMOG00000001341	ncl	57	45.833	ENSDNOG00000040257	-	63	45.528	Dasypus_novemcinctus
ENSGMOG00000001341	ncl	67	46.469	ENSEBUG00000016173	ncl	67	46.565	Eptatretus_burgeri
ENSGMOG00000001341	ncl	67	42.790	ENSELUG00000022826	-	81	44.562	Esox_lucius
ENSGMOG00000001341	ncl	66	66.589	ENSELUG00000006033	ncl	57	68.557	Esox_lucius
ENSGMOG00000001341	ncl	59	55.643	ENSFALG00000007592	-	56	55.471	Ficedula_albicollis
ENSGMOG00000001341	ncl	56	66.954	ENSFHEG00000018000	ncl	62	67.324	Fundulus_heteroclitus
ENSGMOG00000001341	ncl	59	55.526	ENSGALG00000032930	NCL	56	55.385	Gallus_gallus
ENSGMOG00000001341	ncl	59	67.292	ENSGAFG00000015375	ncl	64	67.632	Gambusia_affinis
ENSGMOG00000001341	ncl	84	58.163	ENSGACG00000008970	ncl	87	55.868	Gasterosteus_aculeatus
ENSGMOG00000001341	ncl	60	56.693	ENSGAGG00000013330	-	57	57.732	Gopherus_agassizii
ENSGMOG00000001341	ncl	59	66.310	ENSHBUG00000006869	ncl	54	66.667	Haplochromis_burtoni
ENSGMOG00000001341	ncl	60	67.639	ENSHCOG00000010234	ncl	53	67.969	Hippocampus_comes
ENSGMOG00000001341	ncl	54	62.620	ENSIPUG00000024556	ncl	81	63.175	Ictalurus_punctatus
ENSGMOG00000001341	ncl	66	67.221	ENSKMAG00000008111	ncl	61	68.075	Kryptolebias_marmoratus
ENSGMOG00000001341	ncl	63	40.534	ENSLBEG00000007915	-	67	41.371	Labrus_bergylta
ENSGMOG00000001341	ncl	56	40.921	ENSLBEG00000014278	-	84	40.921	Labrus_bergylta
ENSGMOG00000001341	ncl	66	70.476	ENSLBEG00000019073	ncl	63	70.726	Labrus_bergylta
ENSGMOG00000001341	ncl	66	60.047	ENSLACG00000009328	ncl	69	59.184	Latimeria_chalumnae
ENSGMOG00000001341	ncl	64	51.338	ENSLACG00000022167	-	83	51.399	Latimeria_chalumnae
ENSGMOG00000001341	ncl	54	61.224	ENSLOCG00000004828	ncl	52	59.067	Lepisosteus_oculatus
ENSGMOG00000001341	ncl	65	40.367	ENSMAMG00000003479	-	71	42.000	Mastacembelus_armatus
ENSGMOG00000001341	ncl	59	66.310	ENSMZEG00005017438	ncl	54	66.667	Maylandia_zebra
ENSGMOG00000001341	ncl	56	57.778	ENSMGAG00000008147	-	87	55.263	Meleagris_gallopavo
ENSGMOG00000001341	ncl	54	70.297	ENSMMOG00000008553	ncl	84	71.613	Mola_mola
ENSGMOG00000001341	ncl	59	54.211	ENSMODG00000002470	-	55	54.082	Monodelphis_domestica
ENSGMOG00000001341	ncl	77	58.579	ENSMALG00000014827	ncl	51	70.520	Monopterus_albus
ENSGMOG00000001341	ncl	54	67.025	ENSNBRG00000000146	-	85	67.474	Neolamprologus_brichardi
ENSGMOG00000001341	ncl	54	67.025	ENSNBRG00000001232	ncl	81	67.474	Neolamprologus_brichardi
ENSGMOG00000001341	ncl	60	36.126	ENSONIG00000010631	-	97	36.585	Oreochromis_niloticus
ENSGMOG00000001341	ncl	59	66.310	ENSONIG00000012508	ncl	54	66.667	Oreochromis_niloticus
ENSGMOG00000001341	ncl	59	55.673	ENSOANG00000008732	-	62	55.814	Ornithorhynchus_anatinus
ENSGMOG00000001341	ncl	56	36.813	ENSORLG00000004645	-	79	37.260	Oryzias_latipes
ENSGMOG00000001341	ncl	57	67.945	ENSORLG00000007055	ncl	52	69.110	Oryzias_latipes
ENSGMOG00000001341	ncl	59	68.000	ENSORLG00020017943	ncl	52	69.110	Oryzias_latipes_hni
ENSGMOG00000001341	ncl	56	37.088	ENSORLG00020003497	-	71	37.534	Oryzias_latipes_hni
ENSGMOG00000001341	ncl	56	37.363	ENSORLG00015006613	-	74	37.808	Oryzias_latipes_hsok
ENSGMOG00000001341	ncl	81	62.209	ENSORLG00015013815	ncl	87	69.775	Oryzias_latipes_hsok
ENSGMOG00000001341	ncl	59	68.097	ENSOMEG00000020786	ncl	51	68.586	Oryzias_melastigma
ENSGMOG00000001341	ncl	61	33.081	ENSOMEG00000015864	-	82	33.766	Oryzias_melastigma
ENSGMOG00000001341	ncl	67	65.485	ENSPKIG00000002604	ncl	64	65.803	Paramormyrops_kingsleyae
ENSGMOG00000001341	ncl	66	67.788	ENSPMGG00000004709	ncl	81	68.810	Periophthalmus_magnuspinnatus
ENSGMOG00000001341	ncl	59	54.474	ENSPCIG00000003293	-	55	54.337	Phascolarctos_cinereus
ENSGMOG00000001341	ncl	72	65.517	ENSPFOG00000024205	ncl	70	67.548	Poecilia_formosa
ENSGMOG00000001341	ncl	72	65.227	ENSPLAG00000024026	ncl	52	67.632	Poecilia_latipinna
ENSGMOG00000001341	ncl	72	65.011	ENSPMEG00000006000	ncl	65	67.368	Poecilia_mexicana
ENSGMOG00000001341	ncl	59	66.310	ENSPNYG00000020494	ncl	55	66.667	Pundamilia_nyererei
ENSGMOG00000001341	ncl	66	62.264	ENSPNAG00000006192	ncl	72	57.196	Pygocentrus_nattereri
ENSGMOG00000001341	ncl	59	50.938	ENSSHAG00000002702	-	59	50.933	Sarcophilus_harrisii
ENSGMOG00000001341	ncl	55	43.125	ENSSFOG00015013153	-	81	44.333	Scleropages_formosus
ENSGMOG00000001341	ncl	61	42.424	ENSSMAG00000007582	-	63	42.821	Scophthalmus_maximus
ENSGMOG00000001341	ncl	66	68.150	ENSSMAG00000021241	ncl	54	68.912	Scophthalmus_maximus
ENSGMOG00000001341	ncl	67	68.545	ENSSDUG00000006128	ncl	86	69.657	Seriola_dumerili
ENSGMOG00000001341	ncl	70	38.696	ENSSDUG00000010922	-	72	41.519	Seriola_dumerili
ENSGMOG00000001341	ncl	67	68.545	ENSSLDG00000002012	ncl	59	68.841	Seriola_lalandi_dorsalis
ENSGMOG00000001341	ncl	61	40.447	ENSSLDG00000015784	-	66	40.806	Seriola_lalandi_dorsalis
ENSGMOG00000001341	ncl	73	50.214	ENSSPUG00000008244	-	62	55.941	Sphenodon_punctatus
ENSGMOG00000001341	ncl	54	68.085	ENSSPAG00000002637	ncl	81	68.166	Stegastes_partitus
ENSGMOG00000001341	ncl	61	41.457	ENSSPAG00000001859	-	63	41.667	Stegastes_partitus
ENSGMOG00000001341	ncl	59	55.526	ENSTGUG00000009782	-	62	55.443	Taeniopygia_guttata
ENSGMOG00000001341	ncl	66	67.606	ENSTRUG00000008185	ncl	56	70.312	Takifugu_rubripes
ENSGMOG00000001341	ncl	57	69.613	ENSTNIG00000012186	ncl	63	69.010	Tetraodon_nigroviridis
ENSGMOG00000001341	ncl	58	58.919	ENSXETG00000009517	ncl	54	59.269	Xenopus_tropicalis
ENSGMOG00000001341	ncl	59	44.681	ENSXCOG00000003524	ncl	85	54.341	Xiphophorus_couchianus
ENSGMOG00000001341	ncl	59	38.095	ENSXCOG00000007369	-	92	38.095	Xiphophorus_couchianus
ENSGMOG00000001341	ncl	59	68.097	ENSXMAG00000005914	ncl	52	68.421	Xiphophorus_maculatus