EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGMOG00000001537 (Gene tree)
Gene ID: -
Gene Symbol: chd1
Alias: fc26h11|fk85d05|si:dkey-106m21.4|wu:fc26h11|wu:fk85d05|zgc:173506
Full Name: chromodomain helicase DNA binding protein 1
Gene Type: protein_coding
Species: Gadus_morhua
Status: putative
Strand: Minus strand
Length: 21602 bases
Position: chrGeneScaffold_3731:21493-43094
Accession: ZDB-GENE-030131-7120
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGMOP00000001667	ResIII	PF04851.15	3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGMOT00000001725	-	5286	-	ENSGMOP00000001667	1761 (aa)	-	UPI00023EFA04

Gene Model

Click here to download ENSGMOG00000001537's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGMOG00000001537's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGMOG00000001537	chd1	70	60.532	ENSGMOG00000002890	chd2	81	60.389

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGMOG00000001537	chd1	96	67.184	ENSG00000153922	CHD1	91	84.466	Homo_sapiens
ENSGMOG00000001537	chd1	68	88.230	ENSAPOG00000005764	chd1	96	90.445	Acanthochromis_polyacanthus
ENSGMOG00000001537	chd1	90	82.025	ENSAOCG00000023105	chd1	94	86.957	Amphiprion_ocellaris
ENSGMOG00000001537	chd1	90	83.373	ENSAPEG00000013544	chd1	94	88.416	Amphiprion_percula
ENSGMOG00000001537	chd1	86	87.950	ENSATEG00000010676	chd1	92	87.886	Anabas_testudineus
ENSGMOG00000001537	chd1	71	87.769	ENSAMXG00000010843	chd1	93	87.834	Astyanax_mexicanus
ENSGMOG00000001537	chd1	96	67.242	ENSCATG00000032035	CHD1	97	77.297	Cercocebus_atys
ENSGMOG00000001537	chd1	96	67.011	ENSCSAG00000015339	CHD1	96	77.018	Chlorocebus_sabaeus
ENSGMOG00000001537	chd1	96	65.533	ENSCANG00000036916	CHD1	96	75.251	Colobus_angolensis_palliatus
ENSGMOG00000001537	chd1	100	65.493	ENSCGRG00001023943	Chd1	76	77.238	Cricetulus_griseus_chok1gshd
ENSGMOG00000001537	chd1	100	65.493	ENSCGRG00000008652	Chd1	76	77.238	Cricetulus_griseus_crigri
ENSGMOG00000001537	chd1	90	75.611	ENSCSEG00000009553	chd1	95	87.298	Cynoglossus_semilaevis
ENSGMOG00000001537	chd1	77	77.709	ENSEASG00005016110	CHD1	95	77.581	Equus_asinus_asinus
ENSGMOG00000001537	chd1	90	83.438	ENSELUG00000017677	chd1	93	87.604	Esox_lucius
ENSGMOG00000001537	chd1	70	82.880	ENSFHEG00000021164	chd1	89	87.020	Fundulus_heteroclitus
ENSGMOG00000001537	chd1	92	67.966	ENSGALG00000031327	-	93	81.145	Gallus_gallus
ENSGMOG00000001537	chd1	87	81.078	ENSGAFG00000019880	chd1	90	80.576	Gambusia_affinis
ENSGMOG00000001537	chd1	96	64.540	ENSGGOG00000011463	CHD1	96	73.118	Gorilla_gorilla
ENSGMOG00000001537	chd1	85	87.990	ENSHCOG00000014222	chd1	93	87.830	Hippocampus_comes
ENSGMOG00000001537	chd1	90	74.284	ENSIPUG00000001369	chd1	95	87.457	Ictalurus_punctatus
ENSGMOG00000001537	chd1	56	75.794	ENSLAFG00000023183	CHD1	93	75.746	Loxodonta_africana
ENSGMOG00000001537	chd1	96	67.185	ENSMFAG00000031226	CHD1	96	77.297	Macaca_fascicularis
ENSGMOG00000001537	chd1	77	77.130	ENSMMUG00000014090	CHD1	95	77.018	Macaca_mulatta
ENSGMOG00000001537	chd1	96	67.185	ENSMNEG00000045073	CHD1	96	77.297	Macaca_nemestrina
ENSGMOG00000001537	chd1	96	63.443	ENSMLEG00000041096	CHD1	96	73.050	Mandrillus_leucophaeus
ENSGMOG00000001537	chd1	69	88.804	ENSMZEG00005010957	chd1	91	89.003	Maylandia_zebra
ENSGMOG00000001537	chd1	95	75.622	ENSMOCG00000019121	Chd1	96	77.375	Microtus_ochrogaster
ENSGMOG00000001537	chd1	77	83.333	ENSMALG00000013317	chd1	95	83.666	Monopterus_albus
ENSGMOG00000001537	chd1	100	65.584	MGP_CAROLIEiJ_G0021099	Chd1	96	77.160	Mus_caroli
ENSGMOG00000001537	chd1	100	65.584	ENSMUSG00000023852	Chd1	96	77.392	Mus_musculus
ENSGMOG00000001537	chd1	100	65.932	MGP_PahariEiJ_G0023414	Chd1	96	77.469	Mus_pahari
ENSGMOG00000001537	chd1	84	88.550	ENSNBRG00000006860	chd1	92	88.747	Neolamprologus_brichardi
ENSGMOG00000001537	chd1	96	73.233	ENSNLEG00000014493	CHD1	96	77.273	Nomascus_leucogenys
ENSGMOG00000001537	chd1	97	67.768	ENSOANG00000004891	CHD1	100	84.553	Ornithorhynchus_anatinus
ENSGMOG00000001537	chd1	56	81.791	ENSORLG00015016725	chd1	94	80.919	Oryzias_latipes_hsok
ENSGMOG00000001537	chd1	100	64.857	ENSPPAG00000043367	CHD1	97	76.169	Pan_paniscus
ENSGMOG00000001537	chd1	96	67.184	ENSPTRG00000017103	CHD1	96	77.273	Pan_troglodytes
ENSGMOG00000001537	chd1	96	67.185	ENSPANG00000006387	CHD1	96	77.297	Papio_anubis
ENSGMOG00000001537	chd1	89	78.090	ENSPKIG00000024719	chd1	92	82.152	Paramormyrops_kingsleyae
ENSGMOG00000001537	chd1	72	85.925	ENSPMGG00000005785	chd1	99	83.450	Periophthalmus_magnuspinnatus
ENSGMOG00000001537	chd1	100	65.622	ENSPEMG00000015939	Chd1	95	77.735	Peromyscus_maniculatus_bairdii
ENSGMOG00000001537	chd1	96	72.938	ENSPREG00000004209	chd1	97	83.476	Poecilia_reticulata
ENSGMOG00000001537	chd1	82	74.536	ENSRNOG00000014434	Chd1	95	77.855	Rattus_norvegicus
ENSGMOG00000001537	chd1	91	77.112	ENSRBIG00000044325	CHD1	96	77.554	Rhinopithecus_bieti
ENSGMOG00000001537	chd1	96	67.378	ENSRROG00000001726	CHD1	97	77.494	Rhinopithecus_roxellana
ENSGMOG00000001537	chd1	67	87.097	ENSSFOG00015007161	chd1	90	85.059	Scleropages_formosus
ENSGMOG00000001537	chd1	77	83.434	ENSSDUG00000018314	chd1	94	84.988	Seriola_dumerili
ENSGMOG00000001537	chd1	50	88.523	ENSSLDG00000017244	chd1	88	88.750	Seriola_lalandi_dorsalis
ENSGMOG00000001537	chd1	75	84.846	ENSSPAG00000007024	chd1	95	85.131	Stegastes_partitus
ENSGMOG00000001537	chd1	83	73.553	ENSSSCG00000014177	CHD1	95	81.739	Sus_scrofa
ENSGMOG00000001537	chd1	94	81.716	ENSTRUG00000010282	chd1	95	82.788	Takifugu_rubripes
ENSGMOG00000001537	chd1	68	82.193	ENSTNIG00000007101	chd1	95	81.863	Tetraodon_nigroviridis
ENSGMOG00000001537	chd1	92	78.358	ENSXCOG00000017184	chd1	97	79.017	Xiphophorus_couchianus
ENSGMOG00000001537	chd1	73	82.682	ENSXMAG00000014538	chd1	95	83.243	Xiphophorus_maculatus