EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGMOG00000002028 (Gene tree)
Gene ID: -
Gene Symbol: prpf8
Alias: id:ibd1257|ik:tdsubc_2a9|im:7141966|tdsubc_2a9|wu:fb37c02|wu:fb73e06|xx:tdsubc_2a9|zgc:56504
Full Name: pre-mRNA processing factor 8
Gene Type: protein_coding
Species: Gadus_morhua
Status: putative
Strand: Plus strand
Length: 17364 bases
Position: chrGeneScaffold_1627:39633-56996
Accession: ZDB-GENE-030131-577
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGMOP00000002222	RRM_4	PF10598.9	1.9e-48	1	1
ENSGMOP00000002222	U5_2-snRNA_bdg	PF10597.9	4.9e-74	1	1
ENSGMOP00000002222	PRO8NT	PF08082.11	1.3e-86	1	1
ENSGMOP00000002222	U6-snRNA_bdg	PF10596.9	8.3e-90	1	1
ENSGMOP00000002222	PROCN	PF08083.11	3.1e-235	1	1
ENSGMOP00000002222	PRP8_domainIV	PF12134.8	2.9e-130	1	1
ENSGMOP00000002222	PROCT	PF08084.11	1e-49	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGMOT00000002294	-	7071	-	ENSGMOP00000002222	2356 (aa)	-	UPI00023EFCF0

Gene Model

Click here to download ENSGMOG00000002028's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGMOG00000002028's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGMOG00000002028	prpf8	99	95.389	ENSG00000174231	PRPF8	100	95.389	Homo_sapiens
ENSGMOG00000002028	prpf8	99	96.827	ENSAPOG00000010079	prpf8	100	96.827	Acanthochromis_polyacanthus
ENSGMOG00000002028	prpf8	99	95.389	ENSAMEG00000007940	PRPF8	100	95.389	Ailuropoda_melanoleuca
ENSGMOG00000002028	prpf8	99	94.876	ENSACIG00000018280	prpf8	100	94.876	Amphilophus_citrinellus
ENSGMOG00000002028	prpf8	99	96.870	ENSAOCG00000010725	prpf8	100	96.870	Amphiprion_ocellaris
ENSGMOG00000002028	prpf8	99	96.870	ENSAPEG00000014397	prpf8	100	96.870	Amphiprion_percula
ENSGMOG00000002028	prpf8	99	96.151	ENSATEG00000010062	prpf8	100	96.151	Anabas_testudineus
ENSGMOG00000002028	prpf8	96	95.866	ENSAPLG00000010357	PRPF8	100	95.866	Anas_platyrhynchos
ENSGMOG00000002028	prpf8	82	95.915	ENSACAG00000014784	PRPF8	99	95.915	Anolis_carolinensis
ENSGMOG00000002028	prpf8	99	95.389	ENSANAG00000032629	PRPF8	100	95.389	Aotus_nancymaae
ENSGMOG00000002028	prpf8	99	96.128	ENSACLG00000020858	prpf8	100	96.128	Astatotilapia_calliptera
ENSGMOG00000002028	prpf8	99	96.574	ENSAMXG00000020291	prpf8	100	96.574	Astyanax_mexicanus
ENSGMOG00000002028	prpf8	99	95.389	ENSBTAG00000011488	PRPF8	100	95.389	Bos_taurus
ENSGMOG00000002028	prpf8	99	84.612	WBGene00004187	prp-8	99	84.923	Caenorhabditis_elegans
ENSGMOG00000002028	prpf8	99	95.389	ENSCJAG00000001911	PRPF8	100	95.389	Callithrix_jacchus
ENSGMOG00000002028	prpf8	99	95.389	ENSCAFG00000019221	PRPF8	100	95.389	Canis_familiaris
ENSGMOG00000002028	prpf8	96	95.809	ENSCAFG00020009943	PRPF8	100	95.809	Canis_lupus_dingo
ENSGMOG00000002028	prpf8	99	95.389	ENSCHIG00000017499	PRPF8	100	95.389	Capra_hircus
ENSGMOG00000002028	prpf8	99	95.389	ENSTSYG00000014120	PRPF8	100	95.389	Carlito_syrichta
ENSGMOG00000002028	prpf8	96	93.615	ENSCAPG00000009459	PRPF8	99	93.615	Cavia_aperea
ENSGMOG00000002028	prpf8	99	95.389	ENSCPOG00000010379	PRPF8	100	95.389	Cavia_porcellus
ENSGMOG00000002028	prpf8	99	95.389	ENSCCAG00000031983	-	100	95.389	Cebus_capucinus
ENSGMOG00000002028	prpf8	99	95.389	ENSCATG00000038595	PRPF8	100	95.389	Cercocebus_atys
ENSGMOG00000002028	prpf8	99	95.389	ENSCLAG00000004388	PRPF8	100	95.389	Chinchilla_lanigera
ENSGMOG00000002028	prpf8	99	95.389	ENSCSAG00000013929	PRPF8	100	95.389	Chlorocebus_sabaeus
ENSGMOG00000002028	prpf8	80	93.465	ENSCHOG00000008590	PRPF8	87	94.215	Choloepus_hoffmanni
ENSGMOG00000002028	prpf8	99	95.431	ENSCPBG00000020409	PRPF8	100	95.431	Chrysemys_picta_bellii
ENSGMOG00000002028	prpf8	98	92.755	ENSCSAVG00000007825	-	100	89.507	Ciona_savignyi
ENSGMOG00000002028	prpf8	99	95.389	ENSCANG00000043088	PRPF8	100	95.389	Colobus_angolensis_palliatus
ENSGMOG00000002028	prpf8	73	98.819	ENSCGRG00000005129	Prpf8	100	98.819	Cricetulus_griseus_crigri
ENSGMOG00000002028	prpf8	99	96.913	ENSCSEG00000007905	prpf8	100	96.913	Cynoglossus_semilaevis
ENSGMOG00000002028	prpf8	99	96.326	ENSDARG00000026180	prpf8	100	96.326	Danio_rerio
ENSGMOG00000002028	prpf8	93	95.777	ENSDNOG00000018471	PRPF8	99	95.777	Dasypus_novemcinctus
ENSGMOG00000002028	prpf8	83	96.105	ENSDORG00000006185	Prpf8	96	96.105	Dipodomys_ordii
ENSGMOG00000002028	prpf8	99	89.331	FBgn0033688	Prp8	97	89.795	Drosophila_melanogaster
ENSGMOG00000002028	prpf8	99	90.144	ENSETEG00000017592	PRPF8	100	90.144	Echinops_telfairi
ENSGMOG00000002028	prpf8	98	91.885	ENSEBUG00000006548	prpf8	99	91.885	Eptatretus_burgeri
ENSGMOG00000002028	prpf8	99	95.389	ENSEASG00005009514	PRPF8	99	97.083	Equus_asinus_asinus
ENSGMOG00000002028	prpf8	97	95.871	ENSECAG00000021318	PRPF8	100	95.871	Equus_caballus
ENSGMOG00000002028	prpf8	67	98.519	ENSEEUG00000012120	-	66	98.519	Erinaceus_europaeus
ENSGMOG00000002028	prpf8	98	96.022	ENSELUG00000007120	prpf8	99	96.022	Esox_lucius
ENSGMOG00000002028	prpf8	99	95.389	ENSFCAG00000006297	PRPF8	100	95.389	Felis_catus
ENSGMOG00000002028	prpf8	99	95.516	ENSFALG00000006628	PRPF8	100	95.516	Ficedula_albicollis
ENSGMOG00000002028	prpf8	99	95.389	ENSFDAG00000004711	PRPF8	100	95.389	Fukomys_damarensis
ENSGMOG00000002028	prpf8	99	96.410	ENSFHEG00000021084	prpf8	100	96.410	Fundulus_heteroclitus
ENSGMOG00000002028	prpf8	99	95.516	ENSGALG00000002943	PRPF8	100	95.516	Gallus_gallus
ENSGMOG00000002028	prpf8	99	96.648	ENSGAFG00000010337	prpf8	99	96.648	Gambusia_affinis
ENSGMOG00000002028	prpf8	100	96.665	ENSGACG00000008504	prpf8	100	96.743	Gasterosteus_aculeatus
ENSGMOG00000002028	prpf8	99	95.474	ENSGAGG00000008350	PRPF8	100	95.474	Gopherus_agassizii
ENSGMOG00000002028	prpf8	99	95.389	ENSGGOG00000005516	PRPF8	100	95.389	Gorilla_gorilla
ENSGMOG00000002028	prpf8	99	96.404	ENSHBUG00000016192	prpf8	100	96.404	Haplochromis_burtoni
ENSGMOG00000002028	prpf8	99	95.389	ENSHGLG00000012029	PRPF8	100	95.389	Heterocephalus_glaber_female
ENSGMOG00000002028	prpf8	99	95.389	ENSHGLG00100016494	PRPF8	100	95.389	Heterocephalus_glaber_male
ENSGMOG00000002028	prpf8	99	96.533	ENSHCOG00000016414	prpf8	100	96.533	Hippocampus_comes
ENSGMOG00000002028	prpf8	99	96.658	ENSIPUG00000023230	prpf8	100	96.658	Ictalurus_punctatus
ENSGMOG00000002028	prpf8	99	95.389	ENSSTOG00000005128	PRPF8	100	95.389	Ictidomys_tridecemlineatus
ENSGMOG00000002028	prpf8	99	93.274	ENSJJAG00000021159	Prpf8	99	93.641	Jaculus_jaculus
ENSGMOG00000002028	prpf8	99	96.730	ENSKMAG00000016118	prpf8	99	96.730	Kryptolebias_marmoratus
ENSGMOG00000002028	prpf8	99	96.954	ENSLBEG00000026903	prpf8	100	96.954	Labrus_bergylta
ENSGMOG00000002028	prpf8	95	93.452	ENSLACG00000010479	PRPF8	99	96.135	Latimeria_chalumnae
ENSGMOG00000002028	prpf8	99	96.364	ENSLOCG00000005409	prpf8	99	96.364	Lepisosteus_oculatus
ENSGMOG00000002028	prpf8	99	95.389	ENSLAFG00000015445	PRPF8	100	95.389	Loxodonta_africana
ENSGMOG00000002028	prpf8	99	95.389	ENSMFAG00000039995	PRPF8	100	95.389	Macaca_fascicularis
ENSGMOG00000002028	prpf8	99	95.389	ENSMMUG00000004820	PRPF8	100	95.389	Macaca_mulatta
ENSGMOG00000002028	prpf8	99	95.389	ENSMNEG00000035713	PRPF8	100	95.389	Macaca_nemestrina
ENSGMOG00000002028	prpf8	99	95.389	ENSMLEG00000037937	PRPF8	100	95.389	Mandrillus_leucophaeus
ENSGMOG00000002028	prpf8	99	96.785	ENSMAMG00000008919	prpf8	100	96.785	Mastacembelus_armatus
ENSGMOG00000002028	prpf8	99	96.128	ENSMZEG00005015073	prpf8	100	96.128	Maylandia_zebra
ENSGMOG00000002028	prpf8	99	95.516	ENSMGAG00000004769	PRPF8	100	95.516	Meleagris_gallopavo
ENSGMOG00000002028	prpf8	99	95.389	ENSMICG00000010320	PRPF8	100	95.389	Microcebus_murinus
ENSGMOG00000002028	prpf8	99	95.389	ENSMOCG00000016838	Prpf8	100	95.389	Microtus_ochrogaster
ENSGMOG00000002028	prpf8	99	96.404	ENSMMOG00000011887	prpf8	100	96.404	Mola_mola
ENSGMOG00000002028	prpf8	99	95.389	ENSMODG00000010480	PRPF8	100	95.389	Monodelphis_domestica
ENSGMOG00000002028	prpf8	97	96.034	ENSMALG00000003558	prpf8	100	96.034	Monopterus_albus
ENSGMOG00000002028	prpf8	99	95.347	MGP_CAROLIEiJ_G0016740	Prpf8	100	95.347	Mus_caroli
ENSGMOG00000002028	prpf8	99	95.347	ENSMUSG00000020850	Prpf8	100	95.347	Mus_musculus
ENSGMOG00000002028	prpf8	99	95.305	MGP_PahariEiJ_G0017877	Prpf8	100	95.305	Mus_pahari
ENSGMOG00000002028	prpf8	99	95.347	MGP_SPRETEiJ_G0017583	Prpf8	100	95.347	Mus_spretus
ENSGMOG00000002028	prpf8	99	95.389	ENSMPUG00000013227	PRPF8	100	95.389	Mustela_putorius_furo
ENSGMOG00000002028	prpf8	99	95.268	ENSMLUG00000002666	PRPF8	99	95.652	Myotis_lucifugus
ENSGMOG00000002028	prpf8	99	93.697	ENSNGAG00000005305	Prpf8	99	94.067	Nannospalax_galili
ENSGMOG00000002028	prpf8	99	96.170	ENSNBRG00000013127	prpf8	100	96.170	Neolamprologus_brichardi
ENSGMOG00000002028	prpf8	97	93.800	ENSNLEG00000000897	PRPF8	97	93.677	Nomascus_leucogenys
ENSGMOG00000002028	prpf8	98	94.070	ENSMEUG00000015999	PRPF8	100	94.070	Notamacropus_eugenii
ENSGMOG00000002028	prpf8	99	93.655	ENSOPRG00000003102	PRPF8	100	93.655	Ochotona_princeps
ENSGMOG00000002028	prpf8	99	95.389	ENSODEG00000008468	PRPF8	100	95.389	Octodon_degus
ENSGMOG00000002028	prpf8	99	96.212	ENSONIG00000008153	prpf8	100	96.212	Oreochromis_niloticus
ENSGMOG00000002028	prpf8	82	96.686	ENSOANG00000004250	PRPF8	97	96.686	Ornithorhynchus_anatinus
ENSGMOG00000002028	prpf8	99	95.389	ENSOCUG00000000081	PRPF8	100	95.389	Oryctolagus_cuniculus
ENSGMOG00000002028	prpf8	99	96.689	ENSORLG00000008036	prpf8	100	95.966	Oryzias_latipes
ENSGMOG00000002028	prpf8	99	95.926	ENSORLG00020021070	prpf8	100	95.926	Oryzias_latipes_hni
ENSGMOG00000002028	prpf8	99	95.966	ENSORLG00015002340	prpf8	100	95.966	Oryzias_latipes_hsok
ENSGMOG00000002028	prpf8	99	95.126	ENSOMEG00000016866	prpf8	98	95.092	Oryzias_melastigma
ENSGMOG00000002028	prpf8	99	95.268	ENSOARG00000013312	PRPF8	99	95.652	Ovis_aries
ENSGMOG00000002028	prpf8	99	95.389	ENSPPAG00000042753	PRPF8	100	95.389	Pan_paniscus
ENSGMOG00000002028	prpf8	99	95.389	ENSPPRG00000008746	PRPF8	100	95.389	Panthera_pardus
ENSGMOG00000002028	prpf8	99	95.305	ENSPTIG00000019200	PRPF8	100	95.305	Panthera_tigris_altaica
ENSGMOG00000002028	prpf8	99	95.389	ENSPTRG00000039576	PRPF8	100	95.389	Pan_troglodytes
ENSGMOG00000002028	prpf8	98	95.876	ENSPANG00000024607	PRPF8	98	95.876	Papio_anubis
ENSGMOG00000002028	prpf8	99	96.332	ENSPKIG00000011201	prpf8	100	96.332	Paramormyrops_kingsleyae
ENSGMOG00000002028	prpf8	99	95.389	ENSPSIG00000013393	PRPF8	100	95.389	Pelodiscus_sinensis
ENSGMOG00000002028	prpf8	99	95.389	ENSPEMG00000021699	Prpf8	100	95.389	Peromyscus_maniculatus_bairdii
ENSGMOG00000002028	prpf8	96	91.634	ENSPMAG00000005438	prpf8	100	91.678	Petromyzon_marinus
ENSGMOG00000002028	prpf8	99	95.389	ENSPCIG00000022603	PRPF8	100	95.809	Phascolarctos_cinereus
ENSGMOG00000002028	prpf8	99	95.763	ENSPFOG00000007005	prpf8	100	95.763	Poecilia_formosa
ENSGMOG00000002028	prpf8	99	94.924	ENSPLAG00000020777	prpf8	100	94.924	Poecilia_latipinna
ENSGMOG00000002028	prpf8	99	95.763	ENSPMEG00000004051	prpf8	100	95.763	Poecilia_mexicana
ENSGMOG00000002028	prpf8	99	96.489	ENSPREG00000021902	prpf8	100	96.489	Poecilia_reticulata
ENSGMOG00000002028	prpf8	99	95.389	ENSPPYG00000007777	PRPF8	100	95.389	Pongo_abelii
ENSGMOG00000002028	prpf8	90	94.842	ENSPCAG00000008938	PRPF8	89	95.913	Procavia_capensis
ENSGMOG00000002028	prpf8	99	95.389	ENSPCOG00000015182	PRPF8	100	95.389	Propithecus_coquereli
ENSGMOG00000002028	prpf8	93	96.175	ENSPVAG00000002134	PRPF8	93	96.175	Pteropus_vampyrus
ENSGMOG00000002028	prpf8	99	96.404	ENSPNYG00000016356	prpf8	100	96.404	Pundamilia_nyererei
ENSGMOG00000002028	prpf8	99	96.701	ENSPNAG00000009247	prpf8	100	96.701	Pygocentrus_nattereri
ENSGMOG00000002028	prpf8	99	95.347	ENSRNOG00000003495	Prpf8	100	95.347	Rattus_norvegicus
ENSGMOG00000002028	prpf8	99	95.389	ENSRBIG00000031219	PRPF8	100	95.389	Rhinopithecus_bieti
ENSGMOG00000002028	prpf8	99	95.389	ENSRROG00000038014	PRPF8	100	95.389	Rhinopithecus_roxellana
ENSGMOG00000002028	prpf8	99	61.246	YHR165C	PRP8	96	61.332	Saccharomyces_cerevisiae
ENSGMOG00000002028	prpf8	99	95.389	ENSSBOG00000029717	PRPF8	100	95.389	Saimiri_boliviensis_boliviensis
ENSGMOG00000002028	prpf8	99	95.347	ENSSHAG00000006167	PRPF8	100	95.347	Sarcophilus_harrisii
ENSGMOG00000002028	prpf8	99	96.199	ENSSFOG00015013905	prpf8	100	96.199	Scleropages_formosus
ENSGMOG00000002028	prpf8	99	96.954	ENSSMAG00000017736	prpf8	100	96.954	Scophthalmus_maximus
ENSGMOG00000002028	prpf8	99	96.827	ENSSDUG00000003029	prpf8	100	96.827	Seriola_dumerili
ENSGMOG00000002028	prpf8	69	96.552	ENSSLDG00000017096	prpf8	100	96.552	Seriola_lalandi_dorsalis
ENSGMOG00000002028	prpf8	87	93.524	ENSSARG00000002892	PRPF8	87	93.524	Sorex_araneus
ENSGMOG00000002028	prpf8	99	95.268	ENSSPUG00000007463	PRPF8	100	95.268	Sphenodon_punctatus
ENSGMOG00000002028	prpf8	99	96.235	ENSSPAG00000015639	prpf8	100	96.235	Stegastes_partitus
ENSGMOG00000002028	prpf8	99	95.389	ENSSSCG00000017817	PRPF8	100	95.389	Sus_scrofa
ENSGMOG00000002028	prpf8	51	98.778	ENSTGUG00000015597	-	95	98.778	Taeniopygia_guttata
ENSGMOG00000002028	prpf8	99	95.516	ENSTGUG00000005648	-	100	95.516	Taeniopygia_guttata
ENSGMOG00000002028	prpf8	99	96.574	ENSTRUG00000015906	prpf8	100	96.574	Takifugu_rubripes
ENSGMOG00000002028	prpf8	95	96.471	ENSTNIG00000003460	prpf8	99	96.471	Tetraodon_nigroviridis
ENSGMOG00000002028	prpf8	93	98.570	ENSTBEG00000006431	PRPF8	93	98.570	Tupaia_belangeri
ENSGMOG00000002028	prpf8	99	94.839	ENSTTRG00000006869	PRPF8	99	95.220	Tursiops_truncatus
ENSGMOG00000002028	prpf8	54	96.197	ENSUAMG00000015644	-	95	96.397	Ursus_americanus
ENSGMOG00000002028	prpf8	99	95.135	ENSUMAG00000009385	PRPF8	99	95.519	Ursus_maritimus
ENSGMOG00000002028	prpf8	71	97.561	ENSVPAG00000006063	-	70	97.561	Vicugna_pacos
ENSGMOG00000002028	prpf8	100	95.391	ENSVVUG00000021695	PRPF8	99	95.391	Vulpes_vulpes
ENSGMOG00000002028	prpf8	99	95.349	ENSXETG00000022259	prpf8	100	95.349	Xenopus_tropicalis
ENSGMOG00000002028	prpf8	99	96.409	ENSXCOG00000012775	prpf8	100	96.409	Xiphophorus_couchianus
ENSGMOG00000002028	prpf8	99	96.451	ENSXMAG00000008505	prpf8	100	96.451	Xiphophorus_maculatus