EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGMOG00000002230 (Gene tree)
Gene ID: -
Gene Symbol: polr1a
Alias: fa26a03|sb:cb935|wu:fa26a03
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Gadus_morhua
Status: putative
Strand: Minus strand
Length: 44359 bases
Position: chrGeneScaffold_3844:100250-144608
Accession: ZDB-GENE-030131-5286
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGMOP00000002436	RNA_pol_Rpb1_5	PF04998.17	1.9e-96	1	1
ENSGMOP00000002436	RNA_pol_Rpb1_4	PF05000.17	4.3e-21	1	1
ENSGMOP00000002436	RNA_pol_Rpb1_2	PF00623.20	2.7e-68	1	1
ENSGMOP00000002436	RNA_pol_Rpb1_3	PF04983.18	6.8e-36	1	1
ENSGMOP00000002436	RNA_pol_Rpb1_1	PF04997.12	1.9e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGMOT00000002516	-	4734	-	ENSGMOP00000002436	1577 (aa)	-	UPI00023EFB38

Gene Model

Click here to download ENSGMOG00000002230's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGMOG00000002230's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGMOG00000002230	polr1a	77	42.718	ENSGMOG00000000291	polr3a	72	42.718
ENSGMOG00000002230	polr1a	66	38.760	ENSGMOG00000007725	polr2a	59	38.760

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGMOG00000002230	polr1a	100	60.105	ENSG00000068654	POLR1A	100	60.372	Homo_sapiens
ENSGMOG00000002230	polr1a	68	69.231	ENSAPOG00000017945	polr1a	99	69.573	Acanthochromis_polyacanthus
ENSGMOG00000002230	polr1a	100	59.285	ENSAMEG00000005807	POLR1A	100	61.373	Ailuropoda_melanoleuca
ENSGMOG00000002230	polr1a	100	69.945	ENSACIG00000022147	polr1a	100	69.779	Amphilophus_citrinellus
ENSGMOG00000002230	polr1a	100	71.269	ENSAOCG00000017336	polr1a	100	71.437	Amphiprion_ocellaris
ENSGMOG00000002230	polr1a	100	71.279	ENSAPEG00000016105	polr1a	100	71.446	Amphiprion_percula
ENSGMOG00000002230	polr1a	100	69.846	ENSATEG00000016773	polr1a	100	69.751	Anabas_testudineus
ENSGMOG00000002230	polr1a	87	62.331	ENSAPLG00000013871	POLR1A	99	62.203	Anas_platyrhynchos
ENSGMOG00000002230	polr1a	99	58.979	ENSACAG00000012141	POLR1A	99	58.377	Anolis_carolinensis
ENSGMOG00000002230	polr1a	100	59.687	ENSANAG00000033927	POLR1A	100	59.802	Aotus_nancymaae
ENSGMOG00000002230	polr1a	100	68.704	ENSACLG00000020541	polr1a	100	68.570	Astatotilapia_calliptera
ENSGMOG00000002230	polr1a	100	60.768	ENSBTAG00000006481	POLR1A	100	60.419	Bos_taurus
ENSGMOG00000002230	polr1a	94	41.697	WBGene00012999	rpoa-1	77	60.870	Caenorhabditis_elegans
ENSGMOG00000002230	polr1a	100	59.502	ENSCJAG00000019547	POLR1A	100	59.593	Callithrix_jacchus
ENSGMOG00000002230	polr1a	100	59.251	ENSCAFG00000007613	POLR1A	100	60.163	Canis_familiaris
ENSGMOG00000002230	polr1a	100	60.846	ENSCAFG00020014752	POLR1A	100	61.538	Canis_lupus_dingo
ENSGMOG00000002230	polr1a	100	59.977	ENSCHIG00000018204	POLR1A	100	59.778	Capra_hircus
ENSGMOG00000002230	polr1a	100	58.964	ENSTSYG00000002761	POLR1A	100	59.033	Carlito_syrichta
ENSGMOG00000002230	polr1a	97	57.462	ENSCAPG00000010132	POLR1A	100	57.402	Cavia_aperea
ENSGMOG00000002230	polr1a	100	60.047	ENSCPOG00000012350	POLR1A	100	59.988	Cavia_porcellus
ENSGMOG00000002230	polr1a	100	59.965	ENSCCAG00000019839	POLR1A	100	60.116	Cebus_capucinus
ENSGMOG00000002230	polr1a	100	59.988	ENSCATG00000029786	POLR1A	100	59.965	Cercocebus_atys
ENSGMOG00000002230	polr1a	100	59.675	ENSCLAG00000005187	POLR1A	100	59.570	Chinchilla_lanigera
ENSGMOG00000002230	polr1a	100	59.779	ENSCSAG00000016251	POLR1A	100	59.965	Chlorocebus_sabaeus
ENSGMOG00000002230	polr1a	99	60.340	ENSCPBG00000001115	POLR1A	99	60.411	Chrysemys_picta_bellii
ENSGMOG00000002230	polr1a	98	50.392	ENSCSAVG00000007184	-	99	45.874	Ciona_savignyi
ENSGMOG00000002230	polr1a	100	57.614	ENSCANG00000031785	POLR1A	100	57.699	Colobus_angolensis_palliatus
ENSGMOG00000002230	polr1a	96	61.868	ENSCGRG00001006651	Polr1a	100	61.965	Cricetulus_griseus_chok1gshd
ENSGMOG00000002230	polr1a	62	61.928	ENSCGRG00000010834	Polr1a	100	62.025	Cricetulus_griseus_crigri
ENSGMOG00000002230	polr1a	100	66.966	ENSCSEG00000020190	polr1a	100	66.766	Cynoglossus_semilaevis
ENSGMOG00000002230	polr1a	100	67.024	ENSCVAG00000020941	polr1a	100	67.342	Cyprinodon_variegatus
ENSGMOG00000002230	polr1a	100	64.911	ENSDARG00000098375	polr1a	100	64.772	Danio_rerio
ENSGMOG00000002230	polr1a	100	57.849	ENSDNOG00000010829	POLR1A	100	58.023	Dasypus_novemcinctus
ENSGMOG00000002230	polr1a	100	59.755	ENSDORG00000008298	Polr1a	100	59.825	Dipodomys_ordii
ENSGMOG00000002230	polr1a	72	49.225	FBgn0019938	RpI1	89	46.389	Drosophila_melanogaster
ENSGMOG00000002230	polr1a	71	81.250	ENSETEG00000000412	-	71	81.250	Echinops_telfairi
ENSGMOG00000002230	polr1a	91	47.992	ENSEBUG00000005667	-	99	47.861	Eptatretus_burgeri
ENSGMOG00000002230	polr1a	100	59.757	ENSEASG00005001625	POLR1A	100	59.907	Equus_asinus_asinus
ENSGMOG00000002230	polr1a	100	59.815	ENSECAG00000010092	POLR1A	99	61.915	Equus_caballus
ENSGMOG00000002230	polr1a	100	59.815	ENSECAG00000036306	-	99	61.915	Equus_caballus
ENSGMOG00000002230	polr1a	100	59.815	ENSECAG00000030510	-	99	61.915	Equus_caballus
ENSGMOG00000002230	polr1a	85	83.465	ENSEEUG00000000676	POLR1A	80	83.465	Erinaceus_europaeus
ENSGMOG00000002230	polr1a	100	65.791	ENSELUG00000012769	polr1a	99	66.353	Esox_lucius
ENSGMOG00000002230	polr1a	100	60.151	ENSFCAG00000008966	POLR1A	100	60.442	Felis_catus
ENSGMOG00000002230	polr1a	99	60.731	ENSFALG00000010082	POLR1A	99	60.757	Ficedula_albicollis
ENSGMOG00000002230	polr1a	100	59.661	ENSFDAG00000013726	POLR1A	100	59.475	Fukomys_damarensis
ENSGMOG00000002230	polr1a	100	66.969	ENSFHEG00000005996	polr1a	100	66.747	Fundulus_heteroclitus
ENSGMOG00000002230	polr1a	89	57.991	ENSGALG00000038160	-	98	58.497	Gallus_gallus
ENSGMOG00000002230	polr1a	100	69.343	ENSGAFG00000015266	polr1a	100	69.282	Gambusia_affinis
ENSGMOG00000002230	polr1a	99	71.347	ENSGACG00000018791	polr1a	98	70.851	Gasterosteus_aculeatus
ENSGMOG00000002230	polr1a	91	62.213	ENSGAGG00000004984	-	99	62.467	Gopherus_agassizii
ENSGMOG00000002230	polr1a	100	59.988	ENSGGOG00000001788	POLR1A	100	60.256	Gorilla_gorilla
ENSGMOG00000002230	polr1a	89	71.540	ENSHBUG00000020021	polr1a	99	71.540	Haplochromis_burtoni
ENSGMOG00000002230	polr1a	100	60.140	ENSHGLG00000006334	POLR1A	100	60.093	Heterocephalus_glaber_female
ENSGMOG00000002230	polr1a	100	59.965	ENSHGLG00100006614	POLR1A	100	59.919	Heterocephalus_glaber_male
ENSGMOG00000002230	polr1a	100	69.018	ENSHCOG00000003345	polr1a	100	68.999	Hippocampus_comes
ENSGMOG00000002230	polr1a	100	65.003	ENSIPUG00000013174	polr1a	100	64.924	Ictalurus_punctatus
ENSGMOG00000002230	polr1a	99	59.346	ENSSTOG00000012580	POLR1A	99	59.648	Ictidomys_tridecemlineatus
ENSGMOG00000002230	polr1a	100	60.396	ENSJJAG00000013113	Polr1a	100	60.548	Jaculus_jaculus
ENSGMOG00000002230	polr1a	100	69.643	ENSKMAG00000007399	polr1a	100	69.249	Kryptolebias_marmoratus
ENSGMOG00000002230	polr1a	100	69.419	ENSLBEG00000015401	polr1a	100	69.541	Labrus_bergylta
ENSGMOG00000002230	polr1a	52	60.523	ENSLACG00000003218	polr1a	100	60.523	Latimeria_chalumnae
ENSGMOG00000002230	polr1a	99	66.620	ENSLOCG00000010881	polr1a	98	66.714	Lepisosteus_oculatus
ENSGMOG00000002230	polr1a	100	60.349	ENSLAFG00000014948	POLR1A	100	60.280	Loxodonta_africana
ENSGMOG00000002230	polr1a	100	59.640	ENSMFAG00000046097	POLR1A	100	59.907	Macaca_fascicularis
ENSGMOG00000002230	polr1a	100	59.524	ENSMMUG00000015815	POLR1A	100	59.791	Macaca_mulatta
ENSGMOG00000002230	polr1a	100	59.640	ENSMNEG00000043313	POLR1A	100	59.907	Macaca_nemestrina
ENSGMOG00000002230	polr1a	100	59.513	ENSMLEG00000042428	POLR1A	100	59.489	Mandrillus_leucophaeus
ENSGMOG00000002230	polr1a	100	69.011	ENSMAMG00000016565	polr1a	100	69.355	Mastacembelus_armatus
ENSGMOG00000002230	polr1a	100	69.444	ENSMZEG00005004915	polr1a	100	69.258	Maylandia_zebra
ENSGMOG00000002230	polr1a	99	58.324	ENSMGAG00000013111	POLR1A	99	58.697	Meleagris_gallopavo
ENSGMOG00000002230	polr1a	91	61.818	ENSMAUG00000008497	Polr1a	98	61.988	Mesocricetus_auratus
ENSGMOG00000002230	polr1a	100	60.418	ENSMICG00000000757	POLR1A	100	60.279	Microcebus_murinus
ENSGMOG00000002230	polr1a	100	59.895	ENSMOCG00000000122	Polr1a	100	60.163	Microtus_ochrogaster
ENSGMOG00000002230	polr1a	100	68.769	ENSMMOG00000010216	polr1a	100	68.795	Mola_mola
ENSGMOG00000002230	polr1a	100	57.431	ENSMODG00000009335	POLR1A	87	85.039	Monodelphis_domestica
ENSGMOG00000002230	polr1a	100	70.201	ENSMALG00000013363	polr1a	100	70.556	Monopterus_albus
ENSGMOG00000002230	polr1a	100	59.744	MGP_CAROLIEiJ_G0028494	Polr1a	100	59.953	Mus_caroli
ENSGMOG00000002230	polr1a	100	59.860	ENSMUSG00000049553	Polr1a	100	60.093	Mus_musculus
ENSGMOG00000002230	polr1a	100	59.988	MGP_PahariEiJ_G0022230	Polr1a	100	60.070	Mus_pahari
ENSGMOG00000002230	polr1a	100	58.985	MGP_SPRETEiJ_G0029499	Polr1a	100	59.086	Mus_spretus
ENSGMOG00000002230	polr1a	100	59.815	ENSMPUG00000009135	POLR1A	100	60.675	Mustela_putorius_furo
ENSGMOG00000002230	polr1a	100	59.550	ENSMLUG00000015723	POLR1A	100	59.931	Myotis_lucifugus
ENSGMOG00000002230	polr1a	100	59.919	ENSNGAG00000017907	Polr1a	100	59.977	Nannospalax_galili
ENSGMOG00000002230	polr1a	100	69.017	ENSNBRG00000000519	polr1a	100	69.318	Neolamprologus_brichardi
ENSGMOG00000002230	polr1a	100	58.362	ENSNLEG00000002264	POLR1A	100	58.531	Nomascus_leucogenys
ENSGMOG00000002230	polr1a	74	84.252	ENSMEUG00000011665	-	75	84.252	Notamacropus_eugenii
ENSGMOG00000002230	polr1a	95	62.766	ENSOPRG00000008269	POLR1A	95	62.766	Ochotona_princeps
ENSGMOG00000002230	polr1a	100	60.000	ENSODEG00000003542	POLR1A	100	60.117	Octodon_degus
ENSGMOG00000002230	polr1a	100	68.019	ENSONIG00000015895	polr1a	100	68.768	Oreochromis_niloticus
ENSGMOG00000002230	polr1a	100	59.896	ENSOCUG00000010138	POLR1A	100	60.210	Oryctolagus_cuniculus
ENSGMOG00000002230	polr1a	100	67.416	ENSORLG00000008753	polr1a	99	67.279	Oryzias_latipes
ENSGMOG00000002230	polr1a	100	67.489	ENSORLG00020020726	polr1a	99	67.229	Oryzias_latipes_hni
ENSGMOG00000002230	polr1a	100	66.892	ENSORLG00015016071	polr1a	99	66.831	Oryzias_latipes_hsok
ENSGMOG00000002230	polr1a	100	60.372	ENSOGAG00000004031	POLR1A	100	60.221	Otolemur_garnettii
ENSGMOG00000002230	polr1a	100	60.347	ENSOARG00000020601	POLR1A	100	60.244	Ovis_aries
ENSGMOG00000002230	polr1a	100	59.814	ENSPPAG00000042450	POLR1A	100	60.081	Pan_paniscus
ENSGMOG00000002230	polr1a	100	60.093	ENSPPRG00000006702	POLR1A	100	60.326	Panthera_pardus
ENSGMOG00000002230	polr1a	100	59.769	ENSPTIG00000018783	POLR1A	100	60.000	Panthera_tigris_altaica
ENSGMOG00000002230	polr1a	100	60.046	ENSPTRG00000012147	POLR1A	100	60.256	Pan_troglodytes
ENSGMOG00000002230	polr1a	100	60.105	ENSPANG00000025908	POLR1A	100	60.081	Papio_anubis
ENSGMOG00000002230	polr1a	100	64.745	ENSPKIG00000005468	polr1a	100	64.058	Paramormyrops_kingsleyae
ENSGMOG00000002230	polr1a	66	62.707	ENSPSIG00000009321	-	99	63.070	Pelodiscus_sinensis
ENSGMOG00000002230	polr1a	53	72.297	ENSPMGG00000009718	polr1a	95	72.297	Periophthalmus_magnuspinnatus
ENSGMOG00000002230	polr1a	100	60.000	ENSPEMG00000022224	Polr1a	100	60.209	Peromyscus_maniculatus_bairdii
ENSGMOG00000002230	polr1a	94	59.791	ENSPCIG00000004222	POLR1A	99	59.423	Phascolarctos_cinereus
ENSGMOG00000002230	polr1a	100	67.710	ENSPFOG00000005025	polr1a	100	67.591	Poecilia_formosa
ENSGMOG00000002230	polr1a	100	67.673	ENSPLAG00000021389	polr1a	100	67.969	Poecilia_latipinna
ENSGMOG00000002230	polr1a	100	67.425	ENSPMEG00000006463	polr1a	100	67.761	Poecilia_mexicana
ENSGMOG00000002230	polr1a	100	67.903	ENSPREG00000002389	polr1a	100	67.536	Poecilia_reticulata
ENSGMOG00000002230	polr1a	100	59.931	ENSPPYG00000012217	POLR1A	100	59.791	Pongo_abelii
ENSGMOG00000002230	polr1a	85	57.282	ENSPCAG00000011582	POLR1A	87	56.672	Procavia_capensis
ENSGMOG00000002230	polr1a	100	59.896	ENSPCOG00000026987	POLR1A	100	60.453	Propithecus_coquereli
ENSGMOG00000002230	polr1a	97	62.528	ENSPVAG00000012674	POLR1A	94	62.944	Pteropus_vampyrus
ENSGMOG00000002230	polr1a	100	69.267	ENSPNYG00000000026	polr1a	100	69.139	Pundamilia_nyererei
ENSGMOG00000002230	polr1a	100	66.398	ENSPNAG00000019223	polr1a	100	66.831	Pygocentrus_nattereri
ENSGMOG00000002230	polr1a	100	60.221	ENSRNOG00000009545	Polr1a	100	60.303	Rattus_norvegicus
ENSGMOG00000002230	polr1a	100	59.757	ENSRBIG00000028335	POLR1A	100	59.849	Rhinopithecus_bieti
ENSGMOG00000002230	polr1a	100	59.757	ENSRROG00000031473	POLR1A	100	60.283	Rhinopithecus_roxellana
ENSGMOG00000002230	polr1a	94	39.231	YOR341W	RPA190	85	39.231	Saccharomyces_cerevisiae
ENSGMOG00000002230	polr1a	100	59.849	ENSSBOG00000030262	POLR1A	100	59.733	Saimiri_boliviensis_boliviensis
ENSGMOG00000002230	polr1a	99	55.286	ENSSHAG00000014739	POLR1A	99	55.659	Sarcophilus_harrisii
ENSGMOG00000002230	polr1a	100	64.695	ENSSFOG00015019716	polr1a	100	64.205	Scleropages_formosus
ENSGMOG00000002230	polr1a	100	71.030	ENSSMAG00000014342	polr1a	100	70.994	Scophthalmus_maximus
ENSGMOG00000002230	polr1a	100	69.158	ENSSDUG00000014631	polr1a	100	70.154	Seriola_dumerili
ENSGMOG00000002230	polr1a	100	70.664	ENSSLDG00000024095	polr1a	100	70.418	Seriola_lalandi_dorsalis
ENSGMOG00000002230	polr1a	68	87.805	ENSSARG00000003136	-	70	87.805	Sorex_araneus
ENSGMOG00000002230	polr1a	95	70.000	ENSSPUG00000004215	POLR1A	98	70.000	Sphenodon_punctatus
ENSGMOG00000002230	polr1a	68	70.098	ENSSPAG00000016341	polr1a	99	69.348	Stegastes_partitus
ENSGMOG00000002230	polr1a	82	60.406	ENSSSCG00000008226	POLR1A	99	60.056	Sus_scrofa
ENSGMOG00000002230	polr1a	98	60.130	ENSTGUG00000010704	POLR1A	100	60.024	Taeniopygia_guttata
ENSGMOG00000002230	polr1a	100	66.409	ENSTRUG00000002210	polr1a	99	65.775	Takifugu_rubripes
ENSGMOG00000002230	polr1a	100	61.453	ENSTNIG00000010116	polr1a	100	61.270	Tetraodon_nigroviridis
ENSGMOG00000002230	polr1a	69	84.615	ENSTBEG00000008646	POLR1A	69	84.615	Tupaia_belangeri
ENSGMOG00000002230	polr1a	100	57.317	ENSTTRG00000008597	POLR1A	100	57.576	Tursiops_truncatus
ENSGMOG00000002230	polr1a	72	64.322	ENSUAMG00000012158	-	94	64.407	Ursus_americanus
ENSGMOG00000002230	polr1a	100	61.114	ENSUMAG00000006700	POLR1A	100	61.357	Ursus_maritimus
ENSGMOG00000002230	polr1a	100	60.280	ENSVVUG00000001245	POLR1A	100	60.221	Vulpes_vulpes
ENSGMOG00000002230	polr1a	100	58.246	ENSXETG00000001952	polr1a	100	57.555	Xenopus_tropicalis
ENSGMOG00000002230	polr1a	100	68.709	ENSXMAG00000004032	polr1a	100	68.650	Xiphophorus_maculatus