EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGMOG00000002330 (Gene tree)
Gene ID: -
Gene Symbol: cpsf4
Alias: nar|no arches
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Gadus_morhua
Status: putative
Strand: Plus strand
Length: 4537 bases
Position: chrGeneScaffold_1544:234521-239057
Accession: ZDB-GENE-990415-180
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGMOP00000002474	zf-CCCH	PF00642.24	2.9e-18	1	2
ENSGMOP00000002474	zf-CCCH	PF00642.24	2.9e-18	2	2
ENSGMOP00000002474	zf-CCHC	PF00098.23	2.8e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGMOT00000002555	-	777	-	ENSGMOP00000002474	258 (aa)	-	UPI00023EFCF7

Gene Model

Click here to download ENSGMOG00000002330's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGMOG00000002330's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGMOG00000002330	cpsf4	100	80.233	ENSG00000160917	CPSF4	100	97.321	Homo_sapiens
ENSGMOG00000002330	cpsf4	65	71.271	ENSAPOG00000004921	cpsf4	100	71.271	Acanthochromis_polyacanthus
ENSGMOG00000002330	cpsf4	100	76.015	ENSAMEG00000006252	CPSF4	100	77.491	Ailuropoda_melanoleuca
ENSGMOG00000002330	cpsf4	100	82.558	ENSACIG00000009248	cpsf4	100	84.109	Amphilophus_citrinellus
ENSGMOG00000002330	cpsf4	100	82.288	ENSAOCG00000019616	cpsf4	100	82.288	Amphiprion_ocellaris
ENSGMOG00000002330	cpsf4	100	82.288	ENSAPEG00000011679	cpsf4	100	82.288	Amphiprion_percula
ENSGMOG00000002330	cpsf4	100	86.260	ENSATEG00000007010	cpsf4	100	86.260	Anabas_testudineus
ENSGMOG00000002330	cpsf4	100	75.182	ENSACAG00000012941	CPSF4	89	77.122	Anolis_carolinensis
ENSGMOG00000002330	cpsf4	100	76.015	ENSANAG00000021360	CPSF4	100	77.491	Aotus_nancymaae
ENSGMOG00000002330	cpsf4	100	82.288	ENSACLG00000010374	cpsf4	100	82.288	Astatotilapia_calliptera
ENSGMOG00000002330	cpsf4	100	81.250	ENSAMXG00000031647	cpsf4	100	81.250	Astyanax_mexicanus
ENSGMOG00000002330	cpsf4	100	77.519	ENSBTAG00000002090	CPSF4	100	79.845	Bos_taurus
ENSGMOG00000002330	cpsf4	100	76.404	ENSCJAG00000015826	CPSF4	100	77.491	Callithrix_jacchus
ENSGMOG00000002330	cpsf4	100	76.384	ENSCAFG00000015036	CPSF4	99	85.207	Canis_familiaris
ENSGMOG00000002330	cpsf4	100	71.587	ENSCAFG00020014462	CPSF4	100	72.694	Canis_lupus_dingo
ENSGMOG00000002330	cpsf4	100	75.646	ENSCHIG00000014313	CPSF4	100	77.122	Capra_hircus
ENSGMOG00000002330	cpsf4	100	80.620	ENSTSYG00000005712	-	100	80.620	Carlito_syrichta
ENSGMOG00000002330	cpsf4	89	74.348	ENSTSYG00000008195	-	99	74.477	Carlito_syrichta
ENSGMOG00000002330	cpsf4	100	72.973	ENSTSYG00000014604	-	100	72.973	Carlito_syrichta
ENSGMOG00000002330	cpsf4	80	74.429	ENSCAPG00000013881	CPSF4	96	70.325	Cavia_aperea
ENSGMOG00000002330	cpsf4	100	80.233	ENSCPOG00000001783	CPSF4	100	80.233	Cavia_porcellus
ENSGMOG00000002330	cpsf4	100	76.015	ENSCCAG00000028291	CPSF4	100	77.491	Cebus_capucinus
ENSGMOG00000002330	cpsf4	100	76.226	ENSCATG00000038440	CPSF4	100	77.491	Cercocebus_atys
ENSGMOG00000002330	cpsf4	100	76.015	ENSCLAG00000007050	CPSF4	100	77.491	Chinchilla_lanigera
ENSGMOG00000002330	cpsf4	100	76.015	ENSCSAG00000017795	CPSF4	100	77.491	Chlorocebus_sabaeus
ENSGMOG00000002330	cpsf4	79	74.429	ENSCPBG00000020869	CPSF4	100	76.852	Chrysemys_picta_bellii
ENSGMOG00000002330	cpsf4	65	77.976	ENSCPBG00000010269	-	100	77.976	Chrysemys_picta_bellii
ENSGMOG00000002330	cpsf4	97	54.651	ENSCING00000021080	-	97	54.688	Ciona_intestinalis
ENSGMOG00000002330	cpsf4	96	50.699	ENSCSAVG00000011469	-	97	50.699	Ciona_savignyi
ENSGMOG00000002330	cpsf4	100	76.015	ENSCANG00000019384	CPSF4	100	77.491	Colobus_angolensis_palliatus
ENSGMOG00000002330	cpsf4	100	80.233	ENSCGRG00001024184	Cpsf4	100	80.233	Cricetulus_griseus_chok1gshd
ENSGMOG00000002330	cpsf4	100	76.015	ENSCGRG00000013892	Cpsf4	100	77.491	Cricetulus_griseus_crigri
ENSGMOG00000002330	cpsf4	100	83.395	ENSCSEG00000019055	cpsf4	100	83.395	Cynoglossus_semilaevis
ENSGMOG00000002330	cpsf4	100	81.111	ENSCVAG00000016528	cpsf4	100	81.111	Cyprinodon_variegatus
ENSGMOG00000002330	cpsf4	100	81.319	ENSDARG00000020217	cpsf4	100	81.319	Danio_rerio
ENSGMOG00000002330	cpsf4	100	76.015	ENSDNOG00000006344	CPSF4	100	77.491	Dasypus_novemcinctus
ENSGMOG00000002330	cpsf4	79	74.194	ENSDORG00000000742	Cpsf4	100	76.037	Dipodomys_ordii
ENSGMOG00000002330	cpsf4	100	53.821	FBgn0015621	Clp	99	54.181	Drosophila_melanogaster
ENSGMOG00000002330	cpsf4	73	95.455	ENSETEG00000002608	CPSF4	70	95.455	Echinops_telfairi
ENSGMOG00000002330	cpsf4	99	68.359	ENSEBUG00000012552	cpsf4	98	68.359	Eptatretus_burgeri
ENSGMOG00000002330	cpsf4	100	80.233	ENSEASG00005002487	CPSF4	100	80.233	Equus_asinus_asinus
ENSGMOG00000002330	cpsf4	100	76.015	ENSECAG00000007525	CPSF4	100	77.491	Equus_caballus
ENSGMOG00000002330	cpsf4	62	92.754	ENSEEUG00000002158	CPSF4	73	92.754	Erinaceus_europaeus
ENSGMOG00000002330	cpsf4	100	82.545	ENSELUG00000011481	cpsf4	100	82.545	Esox_lucius
ENSGMOG00000002330	cpsf4	100	76.015	ENSFCAG00000015070	CPSF4	100	77.491	Felis_catus
ENSGMOG00000002330	cpsf4	100	81.783	ENSFALG00000013799	CPSF4	100	81.783	Ficedula_albicollis
ENSGMOG00000002330	cpsf4	65	55.172	ENSFALG00000012906	-	100	55.172	Ficedula_albicollis
ENSGMOG00000002330	cpsf4	90	74.286	ENSFDAG00000014092	CPSF4	100	75.918	Fukomys_damarensis
ENSGMOG00000002330	cpsf4	100	80.812	ENSFHEG00000010880	cpsf4	100	80.812	Fundulus_heteroclitus
ENSGMOG00000002330	cpsf4	99	37.430	ENSGALG00000004441	-	92	37.430	Gallus_gallus
ENSGMOG00000002330	cpsf4	100	81.783	ENSGALG00000004714	CPSF4	100	81.783	Gallus_gallus
ENSGMOG00000002330	cpsf4	100	82.707	ENSGAFG00000010580	cpsf4	100	82.707	Gambusia_affinis
ENSGMOG00000002330	cpsf4	100	86.260	ENSGACG00000007792	cpsf4	100	86.260	Gasterosteus_aculeatus
ENSGMOG00000002330	cpsf4	100	77.007	ENSGAGG00000021835	CPSF4	100	78.967	Gopherus_agassizii
ENSGMOG00000002330	cpsf4	65	78.443	ENSGAGG00000020579	-	92	78.443	Gopherus_agassizii
ENSGMOG00000002330	cpsf4	100	76.015	ENSGGOG00000015131	CPSF4	100	77.491	Gorilla_gorilla
ENSGMOG00000002330	cpsf4	100	82.288	ENSHBUG00000013699	cpsf4	100	82.288	Haplochromis_burtoni
ENSGMOG00000002330	cpsf4	100	75.547	ENSHGLG00000017150	CPSF4	100	76.923	Heterocephalus_glaber_female
ENSGMOG00000002330	cpsf4	86	72.385	ENSHGLG00100009215	-	100	73.950	Heterocephalus_glaber_male
ENSGMOG00000002330	cpsf4	69	62.570	ENSHGLG00100017302	-	100	52.326	Heterocephalus_glaber_male
ENSGMOG00000002330	cpsf4	100	81.685	ENSHCOG00000004397	cpsf4	100	81.685	Hippocampus_comes
ENSGMOG00000002330	cpsf4	100	78.022	ENSIPUG00000017147	cpsf4	100	79.121	Ictalurus_punctatus
ENSGMOG00000002330	cpsf4	100	80.233	ENSSTOG00000001688	CPSF4	100	80.233	Ictidomys_tridecemlineatus
ENSGMOG00000002330	cpsf4	100	76.015	ENSJJAG00000019426	Cpsf4	100	77.491	Jaculus_jaculus
ENSGMOG00000002330	cpsf4	100	80.443	ENSKMAG00000015642	cpsf4	100	80.443	Kryptolebias_marmoratus
ENSGMOG00000002330	cpsf4	100	61.004	ENSLACG00000018470	-	100	61.004	Latimeria_chalumnae
ENSGMOG00000002330	cpsf4	100	77.574	ENSLACG00000010938	CPSF4	100	77.574	Latimeria_chalumnae
ENSGMOG00000002330	cpsf4	100	77.860	ENSLOCG00000004814	cpsf4	100	79.705	Lepisosteus_oculatus
ENSGMOG00000002330	cpsf4	100	76.384	ENSLAFG00000000159	CPSF4	100	77.860	Loxodonta_africana
ENSGMOG00000002330	cpsf4	100	76.015	ENSMFAG00000001462	CPSF4	100	79.310	Macaca_fascicularis
ENSGMOG00000002330	cpsf4	100	76.015	ENSMMUG00000019191	CPSF4	100	77.491	Macaca_mulatta
ENSGMOG00000002330	cpsf4	100	76.015	ENSMNEG00000032306	CPSF4	100	77.491	Macaca_nemestrina
ENSGMOG00000002330	cpsf4	100	76.226	ENSMLEG00000034721	CPSF4	100	77.491	Mandrillus_leucophaeus
ENSGMOG00000002330	cpsf4	100	81.618	ENSMAMG00000006244	cpsf4	100	81.618	Mastacembelus_armatus
ENSGMOG00000002330	cpsf4	100	82.288	ENSMZEG00005007515	cpsf4	100	82.288	Maylandia_zebra
ENSGMOG00000002330	cpsf4	87	80.357	ENSMGAG00000004235	CPSF4	100	80.357	Meleagris_gallopavo
ENSGMOG00000002330	cpsf4	100	76.015	ENSMAUG00000021253	Cpsf4	100	77.491	Mesocricetus_auratus
ENSGMOG00000002330	cpsf4	100	76.015	ENSMICG00000017429	CPSF4	100	77.491	Microcebus_murinus
ENSGMOG00000002330	cpsf4	100	76.015	ENSMOCG00000014901	Cpsf4	100	77.491	Microtus_ochrogaster
ENSGMOG00000002330	cpsf4	100	83.824	ENSMMOG00000001813	cpsf4	100	83.824	Mola_mola
ENSGMOG00000002330	cpsf4	100	76.277	ENSMODG00000001367	CPSF4	100	78.598	Monodelphis_domestica
ENSGMOG00000002330	cpsf4	100	80.515	ENSMALG00000012611	cpsf4	100	80.515	Monopterus_albus
ENSGMOG00000002330	cpsf4	100	80.233	MGP_CAROLIEiJ_G0028012	Cpsf4	100	80.233	Mus_caroli
ENSGMOG00000002330	cpsf4	100	80.233	ENSMUSG00000029625	Cpsf4	100	80.233	Mus_musculus
ENSGMOG00000002330	cpsf4	100	80.233	MGP_PahariEiJ_G0024581	Cpsf4	100	80.233	Mus_pahari
ENSGMOG00000002330	cpsf4	100	80.233	MGP_SPRETEiJ_G0029013	Cpsf4	100	81.081	Mus_spretus
ENSGMOG00000002330	cpsf4	100	76.015	ENSMPUG00000016508	CPSF4	100	77.491	Mustela_putorius_furo
ENSGMOG00000002330	cpsf4	87	78.571	ENSMLUG00000010980	CPSF4	100	78.571	Myotis_lucifugus
ENSGMOG00000002330	cpsf4	100	76.015	ENSNGAG00000001567	Cpsf4	100	77.491	Nannospalax_galili
ENSGMOG00000002330	cpsf4	93	78.486	ENSNBRG00000003943	cpsf4	99	78.486	Neolamprologus_brichardi
ENSGMOG00000002330	cpsf4	100	80.233	ENSNLEG00000011074	CPSF4	100	80.608	Nomascus_leucogenys
ENSGMOG00000002330	cpsf4	100	76.277	ENSMEUG00000006955	CPSF4	100	78.598	Notamacropus_eugenii
ENSGMOG00000002330	cpsf4	100	75.646	ENSOPRG00000013663	CPSF4	100	77.122	Ochotona_princeps
ENSGMOG00000002330	cpsf4	100	76.015	ENSODEG00000011181	-	100	77.491	Octodon_degus
ENSGMOG00000002330	cpsf4	98	68.504	ENSODEG00000018283	-	91	68.504	Octodon_degus
ENSGMOG00000002330	cpsf4	100	64.885	ENSODEG00000009779	-	100	64.885	Octodon_degus
ENSGMOG00000002330	cpsf4	100	82.288	ENSONIG00000008495	cpsf4	100	82.288	Oreochromis_niloticus
ENSGMOG00000002330	cpsf4	100	52.330	ENSOANG00000009568	-	100	52.330	Ornithorhynchus_anatinus
ENSGMOG00000002330	cpsf4	87	76.891	ENSOANG00000007729	CPSF4	100	76.891	Ornithorhynchus_anatinus
ENSGMOG00000002330	cpsf4	100	75.547	ENSOCUG00000002437	CPSF4	70	77.491	Oryctolagus_cuniculus
ENSGMOG00000002330	cpsf4	100	81.618	ENSORLG00000022798	cpsf4	100	81.618	Oryzias_latipes
ENSGMOG00000002330	cpsf4	100	81.618	ENSORLG00020008548	cpsf4	100	81.618	Oryzias_latipes_hni
ENSGMOG00000002330	cpsf4	100	81.250	ENSORLG00015019575	cpsf4	100	81.250	Oryzias_latipes_hsok
ENSGMOG00000002330	cpsf4	100	81.985	ENSOMEG00000005176	cpsf4	100	81.985	Oryzias_melastigma
ENSGMOG00000002330	cpsf4	100	76.015	ENSOGAG00000010884	CPSF4	100	77.491	Otolemur_garnettii
ENSGMOG00000002330	cpsf4	100	69.091	ENSOARG00000018668	CPSF4	100	69.091	Ovis_aries
ENSGMOG00000002330	cpsf4	100	76.015	ENSPPAG00000043355	CPSF4	100	77.491	Pan_paniscus
ENSGMOG00000002330	cpsf4	100	76.015	ENSPPRG00000003134	CPSF4	100	77.491	Panthera_pardus
ENSGMOG00000002330	cpsf4	90	75.000	ENSPTIG00000005604	CPSF4	90	76.639	Panthera_tigris_altaica
ENSGMOG00000002330	cpsf4	100	76.015	ENSPTRG00000019453	CPSF4	100	77.491	Pan_troglodytes
ENSGMOG00000002330	cpsf4	100	76.015	ENSPANG00000023123	CPSF4	100	77.491	Papio_anubis
ENSGMOG00000002330	cpsf4	100	80.435	ENSPKIG00000014278	cpsf4	100	80.435	Paramormyrops_kingsleyae
ENSGMOG00000002330	cpsf4	79	61.137	ENSPSIG00000018198	-	100	61.137	Pelodiscus_sinensis
ENSGMOG00000002330	cpsf4	79	73.973	ENSPSIG00000011229	CPSF4	100	76.389	Pelodiscus_sinensis
ENSGMOG00000002330	cpsf4	100	78.764	ENSPMGG00000017735	cpsf4	100	78.764	Periophthalmus_magnuspinnatus
ENSGMOG00000002330	cpsf4	100	76.015	ENSPEMG00000004508	Cpsf4	100	77.491	Peromyscus_maniculatus_bairdii
ENSGMOG00000002330	cpsf4	100	76.277	ENSPCIG00000024776	CPSF4	100	78.598	Phascolarctos_cinereus
ENSGMOG00000002330	cpsf4	100	82.707	ENSPFOG00000014912	cpsf4	100	82.707	Poecilia_formosa
ENSGMOG00000002330	cpsf4	100	80.695	ENSPLAG00000009599	cpsf4	100	80.695	Poecilia_latipinna
ENSGMOG00000002330	cpsf4	100	82.707	ENSPMEG00000009790	cpsf4	100	82.707	Poecilia_mexicana
ENSGMOG00000002330	cpsf4	100	82.331	ENSPREG00000018166	cpsf4	100	82.331	Poecilia_reticulata
ENSGMOG00000002330	cpsf4	86	73.729	ENSPPYG00000017378	CPSF4	100	75.424	Pongo_abelii
ENSGMOG00000002330	cpsf4	100	76.015	ENSPCAG00000001892	CPSF4	100	77.491	Procavia_capensis
ENSGMOG00000002330	cpsf4	100	76.015	ENSPCOG00000012771	CPSF4	100	77.491	Propithecus_coquereli
ENSGMOG00000002330	cpsf4	100	70.480	ENSPVAG00000007531	CPSF4	100	71.956	Pteropus_vampyrus
ENSGMOG00000002330	cpsf4	100	82.288	ENSPNYG00000018559	cpsf4	100	82.288	Pundamilia_nyererei
ENSGMOG00000002330	cpsf4	100	82.051	ENSPNAG00000003736	cpsf4	100	82.418	Pygocentrus_nattereri
ENSGMOG00000002330	cpsf4	100	80.233	ENSRNOG00000000985	Cpsf4	100	80.233	Rattus_norvegicus
ENSGMOG00000002330	cpsf4	86	74.153	ENSRBIG00000033886	CPSF4	100	75.847	Rhinopithecus_bieti
ENSGMOG00000002330	cpsf4	100	80.233	ENSRROG00000040431	CPSF4	100	80.233	Rhinopithecus_roxellana
ENSGMOG00000002330	cpsf4	100	76.015	ENSSBOG00000020493	CPSF4	100	79.310	Saimiri_boliviensis_boliviensis
ENSGMOG00000002330	cpsf4	100	76.277	ENSSHAG00000011533	CPSF4	100	78.598	Sarcophilus_harrisii
ENSGMOG00000002330	cpsf4	100	79.137	ENSSFOG00015007883	cpsf4	100	78.777	Scleropages_formosus
ENSGMOG00000002330	cpsf4	100	84.733	ENSSMAG00000006374	cpsf4	100	84.733	Scophthalmus_maximus
ENSGMOG00000002330	cpsf4	100	83.516	ENSSDUG00000018887	cpsf4	100	83.516	Seriola_dumerili
ENSGMOG00000002330	cpsf4	100	83.516	ENSSLDG00000019078	cpsf4	100	83.516	Seriola_lalandi_dorsalis
ENSGMOG00000002330	cpsf4	86	74.153	ENSSARG00000012416	CPSF4	100	75.847	Sorex_araneus
ENSGMOG00000002330	cpsf4	100	77.860	ENSSPUG00000003549	CPSF4	100	77.860	Sphenodon_punctatus
ENSGMOG00000002330	cpsf4	96	60.729	ENSSPUG00000014803	-	97	60.729	Sphenodon_punctatus
ENSGMOG00000002330	cpsf4	100	85.659	ENSSPAG00000006174	cpsf4	100	85.659	Stegastes_partitus
ENSGMOG00000002330	cpsf4	100	80.233	ENSSSCG00000026896	CPSF4	100	80.233	Sus_scrofa
ENSGMOG00000002330	cpsf4	100	81.008	ENSTGUG00000007552	CPSF4	100	81.008	Taeniopygia_guttata
ENSGMOG00000002330	cpsf4	100	80.443	ENSTRUG00000024220	cpsf4	100	80.443	Takifugu_rubripes
ENSGMOG00000002330	cpsf4	100	79.775	ENSTNIG00000006265	cpsf4	100	80.292	Tetraodon_nigroviridis
ENSGMOG00000002330	cpsf4	86	66.527	ENSTBEG00000011406	CPSF4	100	67.797	Tupaia_belangeri
ENSGMOG00000002330	cpsf4	78	95.455	ENSTTRG00000003007	CPSF4	77	95.455	Tursiops_truncatus
ENSGMOG00000002330	cpsf4	93	74.689	ENSUAMG00000008051	CPSF4	85	78.814	Ursus_americanus
ENSGMOG00000002330	cpsf4	100	80.233	ENSUMAG00000009474	CPSF4	100	80.233	Ursus_maritimus
ENSGMOG00000002330	cpsf4	100	80.233	ENSVVUG00000008824	CPSF4	100	80.233	Vulpes_vulpes
ENSGMOG00000002330	cpsf4	99	58.889	ENSXETG00000004641	cpsf4l	99	58.889	Xenopus_tropicalis
ENSGMOG00000002330	cpsf4	100	74.558	ENSXETG00000009892	cpsf4	100	74.912	Xenopus_tropicalis
ENSGMOG00000002330	cpsf4	100	82.331	ENSXCOG00000016040	cpsf4	100	82.331	Xiphophorus_couchianus
ENSGMOG00000002330	cpsf4	100	82.707	ENSXMAG00000024670	cpsf4	100	82.707	Xiphophorus_maculatus