EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSGMOG00000003157 (Gene tree)
Gene ID
-
Gene Symbol
cpsf3
Alias
si:dkey-81b15.1|wu:fc32f10|zgc:101655
Full Name
cleavage and polyadenylation specific factor 3
Gene Type
protein_coding
Species
Gadus_morhua
Status
putative
Strand
Plus strand
Length
12554 bases
Position
chrGeneScaffold_313:35170-47723
Accession
ZDB-GENE-030131-3275
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSGMOP00000003337CPSF73-100_CPF11718.87.6e-4911
ENSGMOP00000003337Beta-CaspPF10996.86.5e-3411
ENSGMOP00000003337Lactamase_BPF00753.276.8e-1911
ENSGMOP00000003337RMMBLPF07521.123.1e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSGMOT00000003439-2067-ENSGMOP00000003337688 (aa)-UPI00023F0297
Gene Model
Click here to download ENSGMOG00000003157's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSGMOG00000003157's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSGMOG00000003157cpsf37136.667ENSGMOG00000006721ints118236.905
ENSGMOG00000003157cpsf310087.139ENSGMOG00000011222CPSF310087.283
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSGMOG00000003157cpsf39886.618ENSG00000119203CPSF310099.265Homo_sapiens
ENSGMOG00000003157cpsf37496.857ENSAPOG00000012241CPSF39196.857Acanthochromis_polyacanthus
ENSGMOG00000003157cpsf310089.985ENSAPOG00000022087cpsf310089.985Acanthochromis_polyacanthus
ENSGMOG00000003157cpsf39886.765ENSAMEG00000008493CPSF39986.765Ailuropoda_melanoleuca
ENSGMOG00000003157cpsf39187.143ENSACIG00000023663CPSF39981.014Amphilophus_citrinellus
ENSGMOG00000003157cpsf39187.599ENSACIG00000009846cpsf310081.304Amphilophus_citrinellus
ENSGMOG00000003157cpsf310089.130ENSAOCG00000010077CPSF310089.130Amphiprion_ocellaris
ENSGMOG00000003157cpsf310089.985ENSAOCG00000022056cpsf39694.500Amphiprion_ocellaris
ENSGMOG00000003157cpsf310090.131ENSAPEG00000019526cpsf39991.629Amphiprion_percula
ENSGMOG00000003157cpsf310089.130ENSAPEG00000021167CPSF310089.130Amphiprion_percula
ENSGMOG00000003157cpsf39984.035ENSATEG00000014525CPSF39984.035Anabas_testudineus
ENSGMOG00000003157cpsf39989.971ENSATEG00000003959cpsf39989.971Anabas_testudineus
ENSGMOG00000003157cpsf39785.693ENSAPLG00000006941CPSF39885.693Anas_platyrhynchos
ENSGMOG00000003157cpsf39284.252ENSACAG00000001759CPSF39984.252Anolis_carolinensis
ENSGMOG00000003157cpsf39881.471ENSANAG00000031254CPSF39981.859Aotus_nancymaae
ENSGMOG00000003157cpsf39187.005ENSACLG00000018846CPSF39987.005Astatotilapia_calliptera
ENSGMOG00000003157cpsf39790.827ENSACLG00000014484cpsf39990.827Astatotilapia_calliptera
ENSGMOG00000003157cpsf310087.681ENSAMXG00000004786cpsf310087.681Astyanax_mexicanus
ENSGMOG00000003157cpsf39886.765ENSBTAG00000019735CPSF39986.765Bos_taurus
ENSGMOG00000003157cpsf39555.081WBGene00013460cpsf-39455.081Caenorhabditis_elegans
ENSGMOG00000003157cpsf39886.471ENSCJAG00000006276CPSF39986.471Callithrix_jacchus
ENSGMOG00000003157cpsf39886.765ENSCAFG00000003375CPSF39586.765Canis_familiaris
ENSGMOG00000003157cpsf39089.627ENSCAFG00020026799CPSF39989.627Canis_lupus_dingo
ENSGMOG00000003157cpsf39886.765ENSCHIG00000013973CPSF39986.765Capra_hircus
ENSGMOG00000003157cpsf39886.618ENSTSYG00000002967CPSF39986.618Carlito_syrichta
ENSGMOG00000003157cpsf39686.787ENSCAPG00000013851CPSF39986.787Cavia_aperea
ENSGMOG00000003157cpsf39886.912ENSCPOG00000011299CPSF39986.912Cavia_porcellus
ENSGMOG00000003157cpsf39886.471ENSCCAG00000036730CPSF39986.471Cebus_capucinus
ENSGMOG00000003157cpsf39984.288ENSCATG00000014770CPSF39992.228Cercocebus_atys
ENSGMOG00000003157cpsf39886.912ENSCLAG00000002727CPSF39986.912Chinchilla_lanigera
ENSGMOG00000003157cpsf39878.676ENSCSAG00000007125CPSF39978.676Chlorocebus_sabaeus
ENSGMOG00000003157cpsf38262.742ENSCHOG00000000180CPSF38562.742Choloepus_hoffmanni
ENSGMOG00000003157cpsf39985.797ENSCPBG00000014074CPSF39985.797Chrysemys_picta_bellii
ENSGMOG00000003157cpsf39866.618ENSCING00000007214-9866.618Ciona_intestinalis
ENSGMOG00000003157cpsf39876.878ENSCANG00000034435CPSF39976.878Colobus_angolensis_palliatus
ENSGMOG00000003157cpsf39886.471ENSCGRG00001013134Cpsf39986.471Cricetulus_griseus_chok1gshd
ENSGMOG00000003157cpsf39886.471ENSCGRG00000018319Cpsf39986.471Cricetulus_griseus_crigri
ENSGMOG00000003157cpsf310087.554ENSCSEG00000002021CPSF310087.790Cynoglossus_semilaevis
ENSGMOG00000003157cpsf310088.406ENSCVAG00000015067CPSF310088.406Cyprinodon_variegatus
ENSGMOG00000003157cpsf310088.116ENSDARG00000027649cpsf310088.116Danio_rerio
ENSGMOG00000003157cpsf39985.777ENSDNOG00000008940CPSF39585.777Dasypus_novemcinctus
ENSGMOG00000003157cpsf39487.963ENSDORG00000014263Cpsf39987.963Dipodomys_ordii
ENSGMOG00000003157cpsf39866.471FBgn0261065Cpsf739966.471Drosophila_melanogaster
ENSGMOG00000003157cpsf39475.772ENSETEG00000003893CPSF39975.772Echinops_telfairi
ENSGMOG00000003157cpsf39974.612ENSEBUG00000009018cpsf39975.035Eptatretus_burgeri
ENSGMOG00000003157cpsf39886.765ENSEASG00005003970CPSF39986.765Equus_asinus_asinus
ENSGMOG00000003157cpsf39886.765ENSECAG00000019911CPSF39692.061Equus_caballus
ENSGMOG00000003157cpsf39971.953ENSEEUG00000015422CPSF39971.953Erinaceus_europaeus
ENSGMOG00000003157cpsf39990.843ENSELUG00000013775cpsf39990.843Esox_lucius
ENSGMOG00000003157cpsf39886.765ENSFCAG00000007852CPSF39986.765Felis_catus
ENSGMOG00000003157cpsf39485.781ENSFALG00000006572CPSF310085.781Ficedula_albicollis
ENSGMOG00000003157cpsf39886.303ENSFDAG00000006317CPSF39986.303Fukomys_damarensis
ENSGMOG00000003157cpsf310089.260ENSFHEG00000014774cpsf310089.260Fundulus_heteroclitus
ENSGMOG00000003157cpsf35969.512ENSFHEG00000012186CPSF310069.512Fundulus_heteroclitus
ENSGMOG00000003157cpsf39985.776ENSGALG00000016424CPSF39985.776Gallus_gallus
ENSGMOG00000003157cpsf39187.102ENSGAFG00000019449cpsf310081.132Gambusia_affinis
ENSGMOG00000003157cpsf310088.696ENSGAFG00000008016CPSF310088.696Gambusia_affinis
ENSGMOG00000003157cpsf36781.585ENSGAGG00000025583CPSF39381.585Gopherus_agassizii
ENSGMOG00000003157cpsf39884.460ENSGGOG00000001757CPSF39196.344Gorilla_gorilla
ENSGMOG00000003157cpsf35981.235ENSHBUG00000014332CPSF310081.235Haplochromis_burtoni
ENSGMOG00000003157cpsf310090.856ENSHBUG00000001188cpsf310090.856Haplochromis_burtoni
ENSGMOG00000003157cpsf39886.598ENSHGLG00000000666CPSF39886.598Heterocephalus_glaber_female
ENSGMOG00000003157cpsf39886.598ENSHGLG00100007765CPSF39886.598Heterocephalus_glaber_male
ENSGMOG00000003157cpsf39988.808ENSHCOG00000007251cpsf39988.808Hippocampus_comes
ENSGMOG00000003157cpsf39987.373ENSHCOG00000015957CPSF39987.373Hippocampus_comes
ENSGMOG00000003157cpsf310087.391ENSIPUG00000023488cpsf310087.391Ictalurus_punctatus
ENSGMOG00000003157cpsf39886.471ENSSTOG00000004476CPSF39986.471Ictidomys_tridecemlineatus
ENSGMOG00000003157cpsf39985.924ENSJJAG00000023415Cpsf39985.924Jaculus_jaculus
ENSGMOG00000003157cpsf310088.116ENSKMAG00000007317CPSF310088.116Kryptolebias_marmoratus
ENSGMOG00000003157cpsf310089.405ENSKMAG00000002806cpsf310089.405Kryptolebias_marmoratus
ENSGMOG00000003157cpsf39589.802ENSLBEG00000013492CPSF39989.802Labrus_bergylta
ENSGMOG00000003157cpsf35484.946ENSLBEG00000015018-9984.946Labrus_bergylta
ENSGMOG00000003157cpsf39982.945ENSLBEG00000020569cpsf39682.945Labrus_bergylta
ENSGMOG00000003157cpsf39979.681ENSLACG00000008308CPSF39979.681Latimeria_chalumnae
ENSGMOG00000003157cpsf310087.734ENSLOCG00000016823cpsf310087.734Lepisosteus_oculatus
ENSGMOG00000003157cpsf39885.420ENSLAFG00000009467CPSF39985.420Loxodonta_africana
ENSGMOG00000003157cpsf39886.471ENSMFAG00000001339CPSF39493.347Macaca_fascicularis
ENSGMOG00000003157cpsf39386.068ENSMMUG00000018038CPSF39293.347Macaca_mulatta
ENSGMOG00000003157cpsf39096.800ENSMNEG00000039447CPSF39996.800Macaca_nemestrina
ENSGMOG00000003157cpsf39886.618ENSMLEG00000026825CPSF39295.931Mandrillus_leucophaeus
ENSGMOG00000003157cpsf310088.970ENSMAMG00000003076cpsf310088.970Mastacembelus_armatus
ENSGMOG00000003157cpsf39186.846ENSMAMG00000008835CPSF39980.753Mastacembelus_armatus
ENSGMOG00000003157cpsf310088.551ENSMZEG00005006258CPSF310088.551Maylandia_zebra
ENSGMOG00000003157cpsf310090.856ENSMZEG00005014358cpsf310090.856Maylandia_zebra
ENSGMOG00000003157cpsf39786.057ENSMGAG00000013995CPSF310086.057Meleagris_gallopavo
ENSGMOG00000003157cpsf35477.333ENSMAUG00000000166Cpsf39977.333Mesocricetus_auratus
ENSGMOG00000003157cpsf39881.525ENSMICG00000002363CPSF39981.525Microcebus_murinus
ENSGMOG00000003157cpsf39983.529ENSMOCG00000020067Cpsf39983.529Microtus_ochrogaster
ENSGMOG00000003157cpsf38070.833ENSMMOG00000011923CPSF38577.500Mola_mola
ENSGMOG00000003157cpsf39384.603ENSMMOG00000018212CPSF39884.603Mola_mola
ENSGMOG00000003157cpsf39985.465ENSMODG00000014703CPSF39985.465Monodelphis_domestica
ENSGMOG00000003157cpsf39284.953ENSMALG00000011474CPSF39984.953Monopterus_albus
ENSGMOG00000003157cpsf310090.131ENSMALG00000016416cpsf310090.131Monopterus_albus
ENSGMOG00000003157cpsf39886.912MGP_CAROLIEiJ_G0017640Cpsf39986.912Mus_caroli
ENSGMOG00000003157cpsf39886.912ENSMUSG00000054309Cpsf39697.034Mus_musculus
ENSGMOG00000003157cpsf39886.765MGP_PahariEiJ_G0029397Cpsf39986.765Mus_pahari
ENSGMOG00000003157cpsf39886.912MGP_SPRETEiJ_G0018481Cpsf39986.912Mus_spretus
ENSGMOG00000003157cpsf39886.745ENSMPUG00000013213CPSF39986.745Mustela_putorius_furo
ENSGMOG00000003157cpsf39886.344ENSMLUG00000010636CPSF39986.344Myotis_lucifugus
ENSGMOG00000003157cpsf39886.324ENSNGAG00000019836Cpsf39986.324Nannospalax_galili
ENSGMOG00000003157cpsf310090.421ENSNBRG00000004770cpsf310090.421Neolamprologus_brichardi
ENSGMOG00000003157cpsf39187.005ENSNBRG00000010525CPSF39987.005Neolamprologus_brichardi
ENSGMOG00000003157cpsf39886.471ENSNLEG00000013359CPSF39196.344Nomascus_leucogenys
ENSGMOG00000003157cpsf39856.324ENSMEUG00000013117-9956.324Notamacropus_eugenii
ENSGMOG00000003157cpsf39877.941ENSOPRG00000008902CPSF39977.941Ochotona_princeps
ENSGMOG00000003157cpsf39887.059ENSODEG00000003129CPSF39987.059Octodon_degus
ENSGMOG00000003157cpsf310090.566ENSONIG00000018812cpsf310090.566Oreochromis_niloticus
ENSGMOG00000003157cpsf38184.369ENSOANG00000008577CPSF39984.369Ornithorhynchus_anatinus
ENSGMOG00000003157cpsf39886.618ENSOCUG00000003728CPSF39986.618Oryctolagus_cuniculus
ENSGMOG00000003157cpsf310088.389ENSORLG00000018854cpsf310088.389Oryzias_latipes
ENSGMOG00000003157cpsf310088.244ENSORLG00020013331cpsf310088.244Oryzias_latipes_hni
ENSGMOG00000003157cpsf310088.389ENSORLG00015011017cpsf310088.389Oryzias_latipes_hsok
ENSGMOG00000003157cpsf310088.389ENSOMEG00000010647cpsf39688.389Oryzias_melastigma
ENSGMOG00000003157cpsf39976.799ENSOGAG00000001680CPSF39976.799Otolemur_garnettii
ENSGMOG00000003157cpsf39886.765ENSOARG00000015073CPSF39986.765Ovis_aries
ENSGMOG00000003157cpsf39886.618ENSPPAG00000042457CPSF39196.344Pan_paniscus
ENSGMOG00000003157cpsf39886.176ENSPPRG00000016790CPSF39986.471Panthera_pardus
ENSGMOG00000003157cpsf39886.303ENSPTIG00000003920CPSF39986.598Panthera_tigris_altaica
ENSGMOG00000003157cpsf39886.618ENSPTRG00000011638CPSF39196.137Pan_troglodytes
ENSGMOG00000003157cpsf39886.471ENSPANG00000016798CPSF39493.347Papio_anubis
ENSGMOG00000003157cpsf310088.406ENSPKIG00000023646cpsf310088.406Paramormyrops_kingsleyae
ENSGMOG00000003157cpsf39985.212ENSPSIG00000016144CPSF310085.212Pelodiscus_sinensis
ENSGMOG00000003157cpsf35980.988ENSPMGG00000015311CPSF310080.988Periophthalmus_magnuspinnatus
ENSGMOG00000003157cpsf37893.161ENSPMGG00000006141-9485.382Periophthalmus_magnuspinnatus
ENSGMOG00000003157cpsf39886.176ENSPEMG00000017668Cpsf39986.471Peromyscus_maniculatus_bairdii
ENSGMOG00000003157cpsf37888.582ENSPMAG00000004841cpsf39988.582Petromyzon_marinus
ENSGMOG00000003157cpsf39685.736ENSPCIG00000009823CPSF39886.656Phascolarctos_cinereus
ENSGMOG00000003157cpsf310089.260ENSPFOG00000015922cpsf310089.260Poecilia_formosa
ENSGMOG00000003157cpsf310088.261ENSPFOG00000010418-10088.261Poecilia_formosa
ENSGMOG00000003157cpsf310089.260ENSPLAG00000000882cpsf310089.260Poecilia_latipinna
ENSGMOG00000003157cpsf35982.469ENSPLAG00000021300-10082.469Poecilia_latipinna
ENSGMOG00000003157cpsf310089.405ENSPMEG00000018309cpsf310089.405Poecilia_mexicana
ENSGMOG00000003157cpsf310082.319ENSPREG00000004482CPSF310082.319Poecilia_reticulata
ENSGMOG00000003157cpsf39187.420ENSPREG00000014875cpsf310081.422Poecilia_reticulata
ENSGMOG00000003157cpsf39882.353ENSPPYG00000012666CPSF39982.353Pongo_abelii
ENSGMOG00000003157cpsf37764.783ENSPCAG00000015042CPSF38164.783Procavia_capensis
ENSGMOG00000003157cpsf38688.889ENSPCOG00000023016CPSF39788.889Propithecus_coquereli
ENSGMOG00000003157cpsf39886.892ENSPVAG00000005324CPSF39986.892Pteropus_vampyrus
ENSGMOG00000003157cpsf310090.856ENSPNYG00000004405cpsf310090.856Pundamilia_nyererei
ENSGMOG00000003157cpsf38090.631ENSPNYG00000021047CPSF39390.631Pundamilia_nyererei
ENSGMOG00000003157cpsf310087.826ENSPNAG00000023060cpsf310087.826Pygocentrus_nattereri
ENSGMOG00000003157cpsf39886.765ENSRNOG00000052418Cpsf39986.765Rattus_norvegicus
ENSGMOG00000003157cpsf39881.324ENSRBIG00000041615CPSF39982.198Rhinopithecus_bieti
ENSGMOG00000003157cpsf39886.618ENSRROG00000033792CPSF39986.618Rhinopithecus_roxellana
ENSGMOG00000003157cpsf38940.678YLR277CYSH19140.678Saccharomyces_cerevisiae
ENSGMOG00000003157cpsf39682.537ENSSBOG00000027263CPSF39782.537Saimiri_boliviensis_boliviensis
ENSGMOG00000003157cpsf39886.324ENSSHAG00000007024CPSF39986.324Sarcophilus_harrisii
ENSGMOG00000003157cpsf310088.261ENSSFOG00015002108cpsf310088.328Scleropages_formosus
ENSGMOG00000003157cpsf39589.041ENSSMAG00000020534CPSF39789.041Scophthalmus_maximus
ENSGMOG00000003157cpsf310090.421ENSSDUG00000002828cpsf39790.421Seriola_dumerili
ENSGMOG00000003157cpsf310088.261ENSSDUG00000018498CPSF310088.261Seriola_dumerili
ENSGMOG00000003157cpsf310088.261ENSSLDG00000005234CPSF310088.261Seriola_lalandi_dorsalis
ENSGMOG00000003157cpsf310090.421ENSSLDG00000008469cpsf39394.833Seriola_lalandi_dorsalis
ENSGMOG00000003157cpsf38983.083ENSSARG00000005186CPSF38983.083Sorex_araneus
ENSGMOG00000003157cpsf39684.030ENSSPUG00000015525CPSF39784.030Sphenodon_punctatus
ENSGMOG00000003157cpsf310088.551ENSSPAG00000002906CPSF310088.551Stegastes_partitus
ENSGMOG00000003157cpsf310089.840ENSSPAG00000018579cpsf310089.840Stegastes_partitus
ENSGMOG00000003157cpsf39886.765ENSSSCG00000020799CPSF39986.765Sus_scrofa
ENSGMOG00000003157cpsf39986.050ENSTGUG00000013016CPSF39986.050Taeniopygia_guttata
ENSGMOG00000003157cpsf39989.504ENSTRUG00000007030cpsf39889.504Takifugu_rubripes
ENSGMOG00000003157cpsf35873.020ENSTRUG00000013905CPSF39973.020Takifugu_rubripes
ENSGMOG00000003157cpsf38490.358ENSTBEG00000002707CPSF38490.358Tupaia_belangeri
ENSGMOG00000003157cpsf38673.236ENSTTRG00000000861CPSF38773.236Tursiops_truncatus
ENSGMOG00000003157cpsf39587.615ENSUAMG00000007535CPSF39487.615Ursus_americanus
ENSGMOG00000003157cpsf39386.378ENSUMAG00000003676CPSF39491.935Ursus_maritimus
ENSGMOG00000003157cpsf39286.593ENSVPAG00000008041CPSF310086.593Vicugna_pacos
ENSGMOG00000003157cpsf39886.765ENSVVUG00000002194CPSF39986.765Vulpes_vulpes
ENSGMOG00000003157cpsf39984.928ENSXETG00000008263cpsf39984.928Xenopus_tropicalis
ENSGMOG00000003157cpsf310088.824ENSXCOG00000019695cpsf310088.824Xiphophorus_couchianus
ENSGMOG00000003157cpsf35481.183ENSXCOG00000000957-8781.183Xiphophorus_couchianus
ENSGMOG00000003157cpsf310089.260ENSXMAG00000009784cpsf310089.260Xiphophorus_maculatus
ENSGMOG00000003157cpsf310088.696ENSXMAG00000027291CPSF310088.696Xiphophorus_maculatus

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