EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGMOG00000003231 (Gene tree)
Gene ID: -
Gene Symbol: parn
Alias: zgc:56067
Full Name: poly(A)-specific ribonuclease (deadenylation nuclease)
Gene Type: protein_coding
Species: Gadus_morhua
Status: putative
Strand: Plus strand
Length: 4405 bases
Position: chrGeneScaffold_4032:57227-61631
Accession: ZDB-GENE-040426-880
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGMOP00000003451	RNA_bind	PF08675.11	1.3e-33	1	1
ENSGMOP00000003451	CAF1	PF04857.20	1.9e-89	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGMOT00000003553	-	1641	-	ENSGMOP00000003451	547 (aa)	-	UPI00023F03D8

Gene Model

Click here to download ENSGMOG00000003231's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGMOG00000003231's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGMOG00000003231	parn	97	77.239	ENSG00000140694	PARN	91	77.966	Homo_sapiens
ENSGMOG00000003231	parn	97	75.978	ENSAMEG00000011208	PARN	83	75.978	Ailuropoda_melanoleuca
ENSGMOG00000003231	parn	99	81.488	ENSACIG00000000619	parn	86	81.851	Amphilophus_citrinellus
ENSGMOG00000003231	parn	99	85.455	ENSAOCG00000003465	parn	80	85.455	Amphiprion_ocellaris
ENSGMOG00000003231	parn	89	84.663	ENSAPEG00000010661	parn	93	84.663	Amphiprion_percula
ENSGMOG00000003231	parn	99	86.545	ENSATEG00000004661	parn	80	86.545	Anabas_testudineus
ENSGMOG00000003231	parn	96	77.083	ENSAPLG00000013914	PARN	83	77.083	Anas_platyrhynchos
ENSGMOG00000003231	parn	97	76.723	ENSACAG00000004973	PARN	82	76.723	Anolis_carolinensis
ENSGMOG00000003231	parn	97	77.052	ENSANAG00000031516	PARN	91	77.966	Aotus_nancymaae
ENSGMOG00000003231	parn	99	85.091	ENSACLG00000004742	parn	81	85.455	Astatotilapia_calliptera
ENSGMOG00000003231	parn	99	80.000	ENSAMXG00000012390	parn	87	78.879	Astyanax_mexicanus
ENSGMOG00000003231	parn	99	71.826	ENSBTAG00000018097	PARN	84	74.490	Bos_taurus
ENSGMOG00000003231	parn	97	77.052	ENSCJAG00000015866	PARN	91	77.966	Callithrix_jacchus
ENSGMOG00000003231	parn	97	75.933	ENSCAFG00000018795	PARN	83	75.933	Canis_familiaris
ENSGMOG00000003231	parn	97	75.746	ENSCAFG00020024126	PARN	83	75.746	Canis_lupus_dingo
ENSGMOG00000003231	parn	99	74.773	ENSCHIG00000018143	PARN	86	74.773	Capra_hircus
ENSGMOG00000003231	parn	85	51.042	ENSCAPG00000007984	PARN	78	51.042	Cavia_aperea
ENSGMOG00000003231	parn	97	75.746	ENSCPOG00000002263	PARN	83	75.746	Cavia_porcellus
ENSGMOG00000003231	parn	97	76.866	ENSCCAG00000030367	PARN	91	77.966	Cebus_capucinus
ENSGMOG00000003231	parn	97	76.493	ENSCATG00000041368	PARN	95	76.493	Cercocebus_atys
ENSGMOG00000003231	parn	62	34.722	ENSCATG00000033196	PNLDC1	72	34.722	Cercocebus_atys
ENSGMOG00000003231	parn	97	76.306	ENSCLAG00000015406	PARN	83	76.306	Chinchilla_lanigera
ENSGMOG00000003231	parn	97	76.866	ENSCSAG00000008142	PARN	83	76.866	Chlorocebus_sabaeus
ENSGMOG00000003231	parn	96	58.223	ENSCHOG00000007014	PARN	82	58.223	Choloepus_hoffmanni
ENSGMOG00000003231	parn	86	76.842	ENSCPBG00000006609	PARN	81	76.842	Chrysemys_picta_bellii
ENSGMOG00000003231	parn	93	42.453	ENSCING00000010142	-	99	42.453	Ciona_intestinalis
ENSGMOG00000003231	parn	97	64.663	ENSCANG00000028849	-	76	77.966	Colobus_angolensis_palliatus
ENSGMOG00000003231	parn	97	74.953	ENSCGRG00001012096	Parn	84	74.953	Cricetulus_griseus_chok1gshd
ENSGMOG00000003231	parn	97	74.953	ENSCGRG00000004939	Parn	84	74.953	Cricetulus_griseus_crigri
ENSGMOG00000003231	parn	99	82.353	ENSCSEG00000002064	parn	100	74.545	Cynoglossus_semilaevis
ENSGMOG00000003231	parn	99	84.278	ENSCVAG00000014848	parn	81	84.278	Cyprinodon_variegatus
ENSGMOG00000003231	parn	99	74.545	ENSDARG00000102634	parn	100	65.741	Danio_rerio
ENSGMOG00000003231	parn	97	76.119	ENSDNOG00000000833	PARN	94	76.119	Dasypus_novemcinctus
ENSGMOG00000003231	parn	76	73.485	ENSETEG00000014828	-	69	73.485	Echinops_telfairi
ENSGMOG00000003231	parn	97	76.119	ENSEASG00005011400	PARN	83	76.119	Equus_asinus_asinus
ENSGMOG00000003231	parn	97	76.306	ENSECAG00000017792	PARN	83	76.306	Equus_caballus
ENSGMOG00000003231	parn	82	60.360	ENSEEUG00000010370	PARN	70	60.360	Erinaceus_europaeus
ENSGMOG00000003231	parn	99	83.853	ENSELUG00000013139	parn	73	83.152	Esox_lucius
ENSGMOG00000003231	parn	97	76.119	ENSFCAG00000044961	PARN	83	76.119	Felis_catus
ENSGMOG00000003231	parn	96	76.660	ENSFALG00000003911	PARN	82	76.850	Ficedula_albicollis
ENSGMOG00000003231	parn	97	76.779	ENSFDAG00000009234	PARN	84	76.779	Fukomys_damarensis
ENSGMOG00000003231	parn	99	76.568	ENSFHEG00000013738	parn	92	94.915	Fundulus_heteroclitus
ENSGMOG00000003231	parn	97	76.779	ENSGALG00000003091	PARN	84	76.966	Gallus_gallus
ENSGMOG00000003231	parn	99	82.278	ENSGAFG00000011061	parn	81	82.278	Gambusia_affinis
ENSGMOG00000003231	parn	99	84.545	ENSGACG00000019501	parn	88	84.545	Gasterosteus_aculeatus
ENSGMOG00000003231	parn	97	76.866	ENSGGOG00000025224	PARN	91	77.966	Gorilla_gorilla
ENSGMOG00000003231	parn	99	85.273	ENSHBUG00000017906	parn	92	83.363	Haplochromis_burtoni
ENSGMOG00000003231	parn	97	75.933	ENSHGLG00000010886	PARN	83	75.933	Heterocephalus_glaber_female
ENSGMOG00000003231	parn	97	75.933	ENSHGLG00100014659	PARN	83	75.933	Heterocephalus_glaber_male
ENSGMOG00000003231	parn	99	78.125	ENSHCOG00000008683	parn	94	78.125	Hippocampus_comes
ENSGMOG00000003231	parn	98	69.388	ENSIPUG00000012401	parn	80	69.630	Ictalurus_punctatus
ENSGMOG00000003231	parn	97	75.373	ENSSTOG00000007519	PARN	84	75.373	Ictidomys_tridecemlineatus
ENSGMOG00000003231	parn	97	74.813	ENSJJAG00000023049	Parn	85	74.813	Jaculus_jaculus
ENSGMOG00000003231	parn	100	83.607	ENSKMAG00000009462	parn	81	83.607	Kryptolebias_marmoratus
ENSGMOG00000003231	parn	99	85.064	ENSLBEG00000009167	parn	86	85.064	Labrus_bergylta
ENSGMOG00000003231	parn	94	72.605	ENSLACG00000004207	PARN	100	73.113	Latimeria_chalumnae
ENSGMOG00000003231	parn	99	79.385	ENSLOCG00000000715	parn	80	79.385	Lepisosteus_oculatus
ENSGMOG00000003231	parn	97	76.119	ENSLAFG00000015036	PARN	84	76.119	Loxodonta_africana
ENSGMOG00000003231	parn	97	73.134	ENSMFAG00000044852	PARN	81	76.632	Macaca_fascicularis
ENSGMOG00000003231	parn	97	76.866	ENSMMUG00000018849	PARN	83	76.866	Macaca_mulatta
ENSGMOG00000003231	parn	97	76.866	ENSMNEG00000045108	PARN	83	76.866	Macaca_nemestrina
ENSGMOG00000003231	parn	97	76.679	ENSMLEG00000031743	PARN	83	76.679	Mandrillus_leucophaeus
ENSGMOG00000003231	parn	99	86.055	ENSMAMG00000006939	parn	79	86.055	Mastacembelus_armatus
ENSGMOG00000003231	parn	99	85.273	ENSMZEG00005013590	parn	93	82.821	Maylandia_zebra
ENSGMOG00000003231	parn	95	74.715	ENSMGAG00000001004	PARN	83	74.715	Meleagris_gallopavo
ENSGMOG00000003231	parn	97	68.750	ENSMAUG00000008025	Parn	84	68.750	Mesocricetus_auratus
ENSGMOG00000003231	parn	74	32.877	ENSMAUG00000012298	Pnldc1	85	32.877	Mesocricetus_auratus
ENSGMOG00000003231	parn	97	76.306	ENSMICG00000016053	PARN	91	76.271	Microcebus_murinus
ENSGMOG00000003231	parn	90	76.316	ENSMOCG00000022211	Parn	100	76.316	Microtus_ochrogaster
ENSGMOG00000003231	parn	99	82.364	ENSMMOG00000011333	parn	90	82.364	Mola_mola
ENSGMOG00000003231	parn	90	78.873	ENSMODG00000004915	PARN	99	78.873	Monodelphis_domestica
ENSGMOG00000003231	parn	99	84.601	ENSMALG00000019426	parn	94	84.601	Monopterus_albus
ENSGMOG00000003231	parn	99	73.665	MGP_CAROLIEiJ_G0020466	Parn	86	73.665	Mus_caroli
ENSGMOG00000003231	parn	99	73.665	ENSMUSG00000022685	Parn	100	75.610	Mus_musculus
ENSGMOG00000003231	parn	99	73.665	MGP_PahariEiJ_G0016172	Parn	86	73.665	Mus_pahari
ENSGMOG00000003231	parn	99	73.665	MGP_SPRETEiJ_G0021361	Parn	86	73.665	Mus_spretus
ENSGMOG00000003231	parn	97	76.306	ENSMPUG00000014464	PARN	83	76.306	Mustela_putorius_furo
ENSGMOG00000003231	parn	90	76.768	ENSMLUG00000005414	PARN	100	76.768	Myotis_lucifugus
ENSGMOG00000003231	parn	99	82.514	ENSNBRG00000006805	parn	93	82.878	Neolamprologus_brichardi
ENSGMOG00000003231	parn	97	77.425	ENSNLEG00000010241	PARN	91	77.966	Nomascus_leucogenys
ENSGMOG00000003231	parn	96	55.114	ENSMEUG00000008178	-	83	55.114	Notamacropus_eugenii
ENSGMOG00000003231	parn	96	71.483	ENSOPRG00000012187	PARN	83	71.483	Ochotona_princeps
ENSGMOG00000003231	parn	97	69.759	ENSODEG00000001617	PARN	85	69.759	Octodon_degus
ENSGMOG00000003231	parn	99	85.273	ENSONIG00000000151	parn	83	85.874	Oreochromis_niloticus
ENSGMOG00000003231	parn	50	80.364	ENSOANG00000020155	-	70	80.364	Ornithorhynchus_anatinus
ENSGMOG00000003231	parn	99	74.679	ENSOCUG00000000322	PARN	85	74.679	Oryctolagus_cuniculus
ENSGMOG00000003231	parn	99	83.029	ENSORLG00020010313	parn	82	83.029	Oryzias_latipes_hni
ENSGMOG00000003231	parn	99	83.029	ENSORLG00015000300	parn	82	83.029	Oryzias_latipes_hsok
ENSGMOG00000003231	parn	99	82.117	ENSOMEG00000019555	parn	97	73.516	Oryzias_melastigma
ENSGMOG00000003231	parn	90	76.815	ENSOGAG00000014626	PARN	100	76.815	Otolemur_garnettii
ENSGMOG00000003231	parn	90	77.980	ENSOARG00000007574	PARN	100	77.980	Ovis_aries
ENSGMOG00000003231	parn	97	77.239	ENSPPAG00000031438	PARN	91	77.966	Pan_paniscus
ENSGMOG00000003231	parn	97	76.119	ENSPPRG00000018583	PARN	83	76.119	Panthera_pardus
ENSGMOG00000003231	parn	97	76.119	ENSPTIG00000012135	PARN	83	76.119	Panthera_tigris_altaica
ENSGMOG00000003231	parn	97	77.052	ENSPTRG00000007792	PARN	91	77.966	Pan_troglodytes
ENSGMOG00000003231	parn	97	74.440	ENSPANG00000020099	PARN	83	74.440	Papio_anubis
ENSGMOG00000003231	parn	99	79.673	ENSPKIG00000022807	parn	87	75.360	Paramormyrops_kingsleyae
ENSGMOG00000003231	parn	97	76.493	ENSPSIG00000014804	PARN	83	76.493	Pelodiscus_sinensis
ENSGMOG00000003231	parn	99	79.817	ENSPMGG00000014431	parn	76	80.000	Periophthalmus_magnuspinnatus
ENSGMOG00000003231	parn	97	73.221	ENSPEMG00000018439	Parn	84	73.221	Peromyscus_maniculatus_bairdii
ENSGMOG00000003231	parn	94	68.411	ENSPMAG00000003956	parn	98	68.411	Petromyzon_marinus
ENSGMOG00000003231	parn	77	70.561	ENSPCIG00000001259	PARN	91	77.966	Phascolarctos_cinereus
ENSGMOG00000003231	parn	99	82.577	ENSPFOG00000012823	parn	81	82.577	Poecilia_formosa
ENSGMOG00000003231	parn	99	82.759	ENSPLAG00000006395	parn	81	82.759	Poecilia_latipinna
ENSGMOG00000003231	parn	99	82.396	ENSPMEG00000007711	parn	81	82.396	Poecilia_mexicana
ENSGMOG00000003231	parn	99	82.396	ENSPREG00000000147	parn	81	82.396	Poecilia_reticulata
ENSGMOG00000003231	parn	97	76.580	ENSPPYG00000007123	PARN	83	76.580	Pongo_abelii
ENSGMOG00000003231	parn	91	66.004	ENSPCAG00000001741	PARN	82	66.004	Procavia_capensis
ENSGMOG00000003231	parn	97	73.507	ENSPCOG00000019292	PARN	91	76.271	Propithecus_coquereli
ENSGMOG00000003231	parn	96	73.245	ENSPVAG00000002547	PARN	83	73.245	Pteropus_vampyrus
ENSGMOG00000003231	parn	99	85.273	ENSPNYG00000006835	parn	93	80.289	Pundamilia_nyererei
ENSGMOG00000003231	parn	89	81.020	ENSPNAG00000018905	parn	80	81.020	Pygocentrus_nattereri
ENSGMOG00000003231	parn	99	74.033	ENSRNOG00000002912	Parn	96	74.490	Rattus_norvegicus
ENSGMOG00000003231	parn	97	75.000	ENSSBOG00000034726	PARN	83	75.000	Saimiri_boliviensis_boliviensis
ENSGMOG00000003231	parn	76	77.273	ENSSHAG00000008493	PARN	93	77.273	Sarcophilus_harrisii
ENSGMOG00000003231	parn	99	80.218	ENSSFOG00015014165	parn	90	78.637	Scleropages_formosus
ENSGMOG00000003231	parn	99	84.574	ENSSMAG00000000685	parn	90	79.533	Scophthalmus_maximus
ENSGMOG00000003231	parn	99	85.662	ENSSDUG00000014555	parn	80	85.844	Seriola_dumerili
ENSGMOG00000003231	parn	79	78.161	ENSSARG00000014339	PARN	75	78.161	Sorex_araneus
ENSGMOG00000003231	parn	97	76.779	ENSSPUG00000007719	PARN	84	76.779	Sphenodon_punctatus
ENSGMOG00000003231	parn	99	85.818	ENSSPAG00000007095	parn	89	80.510	Stegastes_partitus
ENSGMOG00000003231	parn	97	76.306	ENSSSCG00000007878	PARN	74	76.306	Sus_scrofa
ENSGMOG00000003231	parn	96	76.705	ENSTGUG00000004971	PARN	83	76.894	Taeniopygia_guttata
ENSGMOG00000003231	parn	99	82.396	ENSTNIG00000008252	parn	88	82.396	Tetraodon_nigroviridis
ENSGMOG00000003231	parn	87	63.025	ENSTBEG00000010407	PARN	81	63.025	Tupaia_belangeri
ENSGMOG00000003231	parn	88	77.207	ENSTTRG00000002843	PARN	77	77.207	Tursiops_truncatus
ENSGMOG00000003231	parn	79	69.565	ENSUAMG00000008283	PARN	94	65.675	Ursus_americanus
ENSGMOG00000003231	parn	97	76.493	ENSUMAG00000004527	PARN	83	76.493	Ursus_maritimus
ENSGMOG00000003231	parn	96	72.779	ENSVPAG00000008968	PARN	85	72.779	Vicugna_pacos
ENSGMOG00000003231	parn	97	76.119	ENSVVUG00000019509	PARN	83	76.119	Vulpes_vulpes
ENSGMOG00000003231	parn	97	74.528	ENSXETG00000010994	parn	100	74.528	Xenopus_tropicalis
ENSGMOG00000003231	parn	99	77.495	ENSXCOG00000015990	parn	93	77.495	Xiphophorus_couchianus
ENSGMOG00000003231	parn	99	82.577	ENSXMAG00000014783	parn	81	82.577	Xiphophorus_maculatus