EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGMOG00000003517 (Gene tree)
Gene ID: -
Gene Symbol: rif1
Alias: fc38c03|si:dkey-89p3.2|wu:fc38c03
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Gadus_morhua
Status: putative
Strand: Minus strand
Length: 25602 bases
Position: chrGeneScaffold_2039:474-26075
Accession: ZDB-GENE-030131-3406
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGMOP00000003803	Rif1_N	PF12231.8	2.3e-77	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGMOT00000003919	-	4725	-	ENSGMOP00000003803	1575 (aa)	-	UPI00023F031E

Gene Model

Click here to download ENSGMOG00000003517's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGMOG00000003517's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGMOG00000003517	rif1	80	52.747	ENSG00000080345	RIF1	92	55.243	Homo_sapiens
ENSGMOG00000003517	rif1	99	67.669	ENSAPOG00000011073	rif1	65	67.669	Acanthochromis_polyacanthus
ENSGMOG00000003517	rif1	81	50.000	ENSAMEG00000008461	RIF1	54	50.000	Ailuropoda_melanoleuca
ENSGMOG00000003517	rif1	91	66.917	ENSACIG00000017765	rif1	66	66.917	Amphilophus_citrinellus
ENSGMOG00000003517	rif1	100	60.691	ENSAOCG00000017231	rif1	67	60.762	Amphiprion_ocellaris
ENSGMOG00000003517	rif1	92	70.939	ENSAPEG00000013228	rif1	67	70.939	Amphiprion_percula
ENSGMOG00000003517	rif1	97	67.857	ENSATEG00000022887	rif1	69	67.857	Anabas_testudineus
ENSGMOG00000003517	rif1	88	49.837	ENSAPLG00000007092	RIF1	63	49.919	Anas_platyrhynchos
ENSGMOG00000003517	rif1	84	47.097	ENSACAG00000003714	RIF1	57	47.184	Anolis_carolinensis
ENSGMOG00000003517	rif1	80	52.747	ENSANAG00000024840	RIF1	53	52.747	Aotus_nancymaae
ENSGMOG00000003517	rif1	93	64.964	ENSAMXG00000010910	rif1	61	64.964	Astyanax_mexicanus
ENSGMOG00000003517	rif1	71	49.262	ENSBTAG00000021020	RIF1	52	49.262	Bos_taurus
ENSGMOG00000003517	rif1	85	51.261	ENSCJAG00000003138	RIF1	56	52.273	Callithrix_jacchus
ENSGMOG00000003517	rif1	82	50.420	ENSCAFG00000005670	RIF1	52	50.420	Canis_familiaris
ENSGMOG00000003517	rif1	82	50.420	ENSCAFG00020016401	RIF1	54	50.420	Canis_lupus_dingo
ENSGMOG00000003517	rif1	81	49.674	ENSCHIG00000020327	RIF1	54	49.600	Capra_hircus
ENSGMOG00000003517	rif1	81	53.782	ENSTSYG00000008861	RIF1	52	53.782	Carlito_syrichta
ENSGMOG00000003517	rif1	69	42.254	ENSCAPG00000008957	RIF1	54	42.254	Cavia_aperea
ENSGMOG00000003517	rif1	81	47.382	ENSCPOG00000037898	RIF1	55	47.199	Cavia_porcellus
ENSGMOG00000003517	rif1	80	52.747	ENSCCAG00000024760	RIF1	52	52.747	Cebus_capucinus
ENSGMOG00000003517	rif1	82	50.000	ENSCATG00000033353	RIF1	53	51.042	Cercocebus_atys
ENSGMOG00000003517	rif1	83	49.462	ENSCLAG00000001517	RIF1	56	49.462	Chinchilla_lanigera
ENSGMOG00000003517	rif1	81	51.261	ENSCSAG00000016089	RIF1	54	51.261	Chlorocebus_sabaeus
ENSGMOG00000003517	rif1	77	52.941	ENSCHOG00000007187	RIF1	50	52.941	Choloepus_hoffmanni
ENSGMOG00000003517	rif1	87	48.538	ENSCPBG00000025885	RIF1	61	48.878	Chrysemys_picta_bellii
ENSGMOG00000003517	rif1	80	52.747	ENSCANG00000028962	RIF1	56	51.261	Colobus_angolensis_palliatus
ENSGMOG00000003517	rif1	92	48.019	ENSCGRG00001024589	Rif1	55	50.833	Cricetulus_griseus_chok1gshd
ENSGMOG00000003517	rif1	90	49.421	ENSCGRG00000010713	Rif1	55	50.833	Cricetulus_griseus_crigri
ENSGMOG00000003517	rif1	99	64.925	ENSCSEG00000003945	rif1	69	64.925	Cynoglossus_semilaevis
ENSGMOG00000003517	rif1	100	57.218	ENSCVAG00000022479	rif1	68	58.389	Cyprinodon_variegatus
ENSGMOG00000003517	rif1	96	58.042	ENSDARG00000062650	rif1	62	58.042	Danio_rerio
ENSGMOG00000003517	rif1	85	46.723	ENSDNOG00000011194	RIF1	55	46.734	Dasypus_novemcinctus
ENSGMOG00000003517	rif1	83	52.941	ENSETEG00000012421	RIF1	55	52.941	Echinops_telfairi
ENSGMOG00000003517	rif1	75	66.885	ENSEASG00005023434	RIF1	52	66.885	Equus_asinus_asinus
ENSGMOG00000003517	rif1	77	58.171	ENSECAG00000012679	RIF1	52	57.927	Equus_caballus
ENSGMOG00000003517	rif1	89	67.669	ENSELUG00000006826	rif1	58	67.669	Esox_lucius
ENSGMOG00000003517	rif1	79	55.714	ENSFCAG00000029742	RIF1	52	55.714	Felis_catus
ENSGMOG00000003517	rif1	71	50.984	ENSFALG00000013874	RIF1	56	51.078	Ficedula_albicollis
ENSGMOG00000003517	rif1	83	50.205	ENSFDAG00000006538	RIF1	56	50.123	Fukomys_damarensis
ENSGMOG00000003517	rif1	100	73.043	ENSFHEG00000013721	rif1	69	73.043	Fundulus_heteroclitus
ENSGMOG00000003517	rif1	69	59.420	ENSGALG00000012484	RIF1	54	58.904	Gallus_gallus
ENSGMOG00000003517	rif1	95	69.075	ENSGAFG00000017196	rif1	68	69.075	Gambusia_affinis
ENSGMOG00000003517	rif1	99	66.412	ENSGACG00000008579	rif1	70	66.667	Gasterosteus_aculeatus
ENSGMOG00000003517	rif1	85	49.434	ENSGAGG00000012595	RIF1	60	49.469	Gopherus_agassizii
ENSGMOG00000003517	rif1	99	61.765	ENSHBUG00000007125	rif1	72	61.765	Haplochromis_burtoni
ENSGMOG00000003517	rif1	84	48.670	ENSHGLG00100009807	RIF1	59	48.670	Heterocephalus_glaber_male
ENSGMOG00000003517	rif1	100	56.970	ENSHCOG00000015943	rif1	62	56.970	Hippocampus_comes
ENSGMOG00000003517	rif1	96	59.859	ENSIPUG00000021703	rif1	65	59.859	Ictalurus_punctatus
ENSGMOG00000003517	rif1	81	49.878	ENSSTOG00000020712	RIF1	54	51.587	Ictidomys_tridecemlineatus
ENSGMOG00000003517	rif1	80	48.515	ENSJJAG00000023000	Rif1	54	49.573	Jaculus_jaculus
ENSGMOG00000003517	rif1	100	56.172	ENSKMAG00000002852	rif1	72	56.135	Kryptolebias_marmoratus
ENSGMOG00000003517	rif1	99	67.391	ENSLBEG00000023196	rif1	61	67.391	Labrus_bergylta
ENSGMOG00000003517	rif1	85	53.748	ENSLACG00000005425	RIF1	58	53.221	Latimeria_chalumnae
ENSGMOG00000003517	rif1	99	58.537	ENSLOCG00000002657	rif1	66	63.415	Lepisosteus_oculatus
ENSGMOG00000003517	rif1	85	52.500	ENSLAFG00000009796	RIF1	56	52.500	Loxodonta_africana
ENSGMOG00000003517	rif1	82	50.000	ENSMFAG00000032233	RIF1	53	51.042	Macaca_fascicularis
ENSGMOG00000003517	rif1	82	50.000	ENSMMUG00000008611	RIF1	54	50.000	Macaca_mulatta
ENSGMOG00000003517	rif1	82	50.000	ENSMNEG00000031616	RIF1	53	51.042	Macaca_nemestrina
ENSGMOG00000003517	rif1	82	50.000	ENSMLEG00000042945	RIF1	53	51.042	Mandrillus_leucophaeus
ENSGMOG00000003517	rif1	100	59.155	ENSMAMG00000001745	rif1	71	59.155	Mastacembelus_armatus
ENSGMOG00000003517	rif1	99	64.394	ENSMZEG00005020920	rif1	71	64.394	Maylandia_zebra
ENSGMOG00000003517	rif1	82	51.050	ENSMGAG00000012732	RIF1	59	51.134	Meleagris_gallopavo
ENSGMOG00000003517	rif1	74	62.712	ENSMAUG00000013158	Rif1	52	63.690	Mesocricetus_auratus
ENSGMOG00000003517	rif1	81	51.261	ENSMICG00000046127	RIF1	54	51.261	Microcebus_murinus
ENSGMOG00000003517	rif1	90	47.222	ENSMOCG00000009381	Rif1	61	47.222	Microtus_ochrogaster
ENSGMOG00000003517	rif1	100	62.411	ENSMMOG00000006519	rif1	67	62.411	Mola_mola
ENSGMOG00000003517	rif1	81	52.846	ENSMODG00000003703	RIF1	55	52.846	Monodelphis_domestica
ENSGMOG00000003517	rif1	100	57.631	ENSMALG00000016759	rif1	72	57.711	Monopterus_albus
ENSGMOG00000003517	rif1	83	49.633	MGP_CAROLIEiJ_G0023555	Rif1	56	49.425	Mus_caroli
ENSGMOG00000003517	rif1	83	49.200	ENSMUSG00000036202	Rif1	56	49.428	Mus_musculus
ENSGMOG00000003517	rif1	89	46.048	MGP_PahariEiJ_G0025006	Rif1	55	49.296	Mus_pahari
ENSGMOG00000003517	rif1	83	49.639	MGP_SPRETEiJ_G0024476	Rif1	56	50.041	Mus_spretus
ENSGMOG00000003517	rif1	89	50.847	ENSMPUG00000000371	RIF1	59	50.847	Mustela_putorius_furo
ENSGMOG00000003517	rif1	66	50.794	ENSMLUG00000003376	RIF1	50	50.794	Myotis_lucifugus
ENSGMOG00000003517	rif1	82	49.306	ENSNGAG00000009268	Rif1	57	49.302	Nannospalax_galili
ENSGMOG00000003517	rif1	99	63.636	ENSNBRG00000014257	rif1	71	63.636	Neolamprologus_brichardi
ENSGMOG00000003517	rif1	80	52.747	ENSNLEG00000010955	RIF1	53	52.747	Nomascus_leucogenys
ENSGMOG00000003517	rif1	83	46.776	ENSODEG00000003950	RIF1	56	47.039	Octodon_degus
ENSGMOG00000003517	rif1	100	65.152	ENSONIG00000013657	rif1	70	65.152	Oreochromis_niloticus
ENSGMOG00000003517	rif1	82	50.000	ENSOCUG00000017435	RIF1	54	50.000	Oryctolagus_cuniculus
ENSGMOG00000003517	rif1	97	68.421	ENSORLG00020001302	rif1	68	68.421	Oryzias_latipes_hni
ENSGMOG00000003517	rif1	97	71.429	ENSORLG00015000009	rif1	67	71.429	Oryzias_latipes_hsok
ENSGMOG00000003517	rif1	99	68.103	ENSOMEG00000021513	rif1	69	68.103	Oryzias_melastigma
ENSGMOG00000003517	rif1	83	49.228	ENSOGAG00000006141	RIF1	55	49.016	Otolemur_garnettii
ENSGMOG00000003517	rif1	81	49.919	ENSOARG00000008930	RIF1	54	49.672	Ovis_aries
ENSGMOG00000003517	rif1	80	52.747	ENSPPAG00000023754	RIF1	53	52.747	Pan_paniscus
ENSGMOG00000003517	rif1	79	55.714	ENSPPRG00000003618	RIF1	52	55.714	Panthera_pardus
ENSGMOG00000003517	rif1	81	49.797	ENSPTIG00000020652	RIF1	53	49.630	Panthera_tigris_altaica
ENSGMOG00000003517	rif1	80	52.747	ENSPTRG00000012534	RIF1	53	52.747	Pan_troglodytes
ENSGMOG00000003517	rif1	82	50.000	ENSPANG00000008525	RIF1	54	50.082	Papio_anubis
ENSGMOG00000003517	rif1	96	62.222	ENSPKIG00000004267	rif1	65	62.222	Paramormyrops_kingsleyae
ENSGMOG00000003517	rif1	60	52.037	ENSPSIG00000012517	RIF1	94	52.037	Pelodiscus_sinensis
ENSGMOG00000003517	rif1	99	64.444	ENSPMGG00000016141	rif1	78	64.444	Periophthalmus_magnuspinnatus
ENSGMOG00000003517	rif1	87	50.000	ENSPEMG00000000446	Rif1	56	49.917	Peromyscus_maniculatus_bairdii
ENSGMOG00000003517	rif1	86	60.000	ENSPCIG00000009185	RIF1	60	60.000	Phascolarctos_cinereus
ENSGMOG00000003517	rif1	89	58.503	ENSPFOG00000000554	-	68	58.503	Poecilia_formosa
ENSGMOG00000003517	rif1	100	60.331	ENSPFOG00000017804	rif1	70	59.920	Poecilia_formosa
ENSGMOG00000003517	rif1	99	63.636	ENSPLAG00000017945	rif1	67	63.636	Poecilia_latipinna
ENSGMOG00000003517	rif1	84	59.184	ENSPMEG00000006897	-	65	59.184	Poecilia_mexicana
ENSGMOG00000003517	rif1	99	60.714	ENSPREG00000018052	rif1	69	60.916	Poecilia_reticulata
ENSGMOG00000003517	rif1	81	51.261	ENSPPYG00000012846	RIF1	54	51.261	Pongo_abelii
ENSGMOG00000003517	rif1	81	53.782	ENSPCOG00000027888	RIF1	54	53.782	Propithecus_coquereli
ENSGMOG00000003517	rif1	75	57.056	ENSPVAG00000014276	RIF1	51	56.907	Pteropus_vampyrus
ENSGMOG00000003517	rif1	99	64.394	ENSPNYG00000012940	rif1	66	64.394	Pundamilia_nyererei
ENSGMOG00000003517	rif1	90	59.327	ENSPNAG00000016685	rif1	65	58.667	Pygocentrus_nattereri
ENSGMOG00000003517	rif1	82	49.194	ENSRNOG00000054901	Rif1	57	50.350	Rattus_norvegicus
ENSGMOG00000003517	rif1	89	51.261	ENSRBIG00000003704	RIF1	58	52.747	Rhinopithecus_bieti
ENSGMOG00000003517	rif1	81	52.747	ENSRROG00000028206	RIF1	54	52.747	Rhinopithecus_roxellana
ENSGMOG00000003517	rif1	77	55.172	ENSSBOG00000029530	RIF1	52	52.747	Saimiri_boliviensis_boliviensis
ENSGMOG00000003517	rif1	83	49.315	ENSSHAG00000018552	RIF1	56	49.315	Sarcophilus_harrisii
ENSGMOG00000003517	rif1	90	62.500	ENSSFOG00015021539	rif1	67	62.500	Scleropages_formosus
ENSGMOG00000003517	rif1	99	69.355	ENSSMAG00000011704	rif1	63	69.697	Scophthalmus_maximus
ENSGMOG00000003517	rif1	97	70.229	ENSSDUG00000015632	rif1	69	70.229	Seriola_dumerili
ENSGMOG00000003517	rif1	99	70.229	ENSSLDG00000019531	rif1	66	70.229	Seriola_lalandi_dorsalis
ENSGMOG00000003517	rif1	83	49.455	ENSSPUG00000003062	RIF1	58	50.215	Sphenodon_punctatus
ENSGMOG00000003517	rif1	82	68.367	ENSSPAG00000018359	rif1	86	68.367	Stegastes_partitus
ENSGMOG00000003517	rif1	83	52.703	ENSSSCG00000016395	RIF1	55	48.859	Sus_scrofa
ENSGMOG00000003517	rif1	68	52.941	ENSTGUG00000016761	RIF1	100	53.654	Taeniopygia_guttata
ENSGMOG00000003517	rif1	98	62.963	ENSTRUG00000015808	rif1	71	62.963	Takifugu_rubripes
ENSGMOG00000003517	rif1	94	63.846	ENSTNIG00000011538	rif1	70	63.846	Tetraodon_nigroviridis
ENSGMOG00000003517	rif1	82	49.756	ENSTTRG00000011190	RIF1	54	49.630	Tursiops_truncatus
ENSGMOG00000003517	rif1	79	55.714	ENSUMAG00000000337	RIF1	52	55.714	Ursus_maritimus
ENSGMOG00000003517	rif1	81	49.580	ENSVPAG00000002162	RIF1	53	49.580	Vicugna_pacos
ENSGMOG00000003517	rif1	89	50.420	ENSVVUG00000011293	RIF1	59	50.420	Vulpes_vulpes
ENSGMOG00000003517	rif1	97	44.444	ENSXETG00000004530	rif1	65	44.444	Xenopus_tropicalis
ENSGMOG00000003517	rif1	98	58.252	ENSXMAG00000000506	rif1	69	57.692	Xiphophorus_maculatus