EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGMOG00000004228 (Gene tree)
Gene ID: -
Gene Symbol: usb1
Alias: zgc:91896
Full Name: U6 snRNA biogenesis 1
Gene Type: protein_coding
Species: Gadus_morhua
Status: putative
Strand: Minus strand
Length: 3452 bases
Position: chrGeneScaffold_307:48722-52173
Accession: ZDB-GENE-040801-197
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGMOP00000004472	HVSL	PF09749.9	4.2e-60	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGMOT00000004608	-	666	-	ENSGMOP00000004472	222 (aa)	-	UPI00023F03BA

Gene Model

Click here to download ENSGMOG00000004228's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGMOG00000004228's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGMOG00000004228	usb1	99	51.570	ENSG00000103005	USB1	100	51.869	Homo_sapiens
ENSGMOG00000004228	usb1	100	71.749	ENSAPOG00000011942	usb1	80	71.749	Acanthochromis_polyacanthus
ENSGMOG00000004228	usb1	99	51.570	ENSAMEG00000017205	USB1	83	51.570	Ailuropoda_melanoleuca
ENSGMOG00000004228	usb1	100	72.197	ENSACIG00000012234	usb1	82	72.197	Amphilophus_citrinellus
ENSGMOG00000004228	usb1	99	73.423	ENSAOCG00000014831	usb1	79	73.423	Amphiprion_ocellaris
ENSGMOG00000004228	usb1	99	73.874	ENSAPEG00000000296	usb1	79	73.874	Amphiprion_percula
ENSGMOG00000004228	usb1	99	73.874	ENSATEG00000009348	usb1	79	73.874	Anabas_testudineus
ENSGMOG00000004228	usb1	99	55.111	ENSAPLG00000002756	USB1	99	55.111	Anas_platyrhynchos
ENSGMOG00000004228	usb1	99	51.556	ENSACAG00000015481	USB1	98	51.556	Anolis_carolinensis
ENSGMOG00000004228	usb1	99	49.776	ENSANAG00000035640	USB1	84	49.776	Aotus_nancymaae
ENSGMOG00000004228	usb1	100	71.749	ENSACLG00000020586	usb1	79	71.749	Astatotilapia_calliptera
ENSGMOG00000004228	usb1	99	63.063	ENSAMXG00000040146	usb1	74	63.063	Astyanax_mexicanus
ENSGMOG00000004228	usb1	99	50.673	ENSBTAG00000015758	USB1	84	50.673	Bos_taurus
ENSGMOG00000004228	usb1	99	51.121	ENSCJAG00000011733	USB1	84	51.121	Callithrix_jacchus
ENSGMOG00000004228	usb1	99	50.450	ENSCAFG00000008556	USB1	59	50.450	Canis_familiaris
ENSGMOG00000004228	usb1	99	50.450	ENSCAFG00020009263	USB1	83	50.450	Canis_lupus_dingo
ENSGMOG00000004228	usb1	99	50.224	ENSCHIG00000024290	USB1	84	50.224	Capra_hircus
ENSGMOG00000004228	usb1	99	50.673	ENSTSYG00000006997	USB1	84	50.673	Carlito_syrichta
ENSGMOG00000004228	usb1	99	40.991	ENSCAPG00000009057	USB1	95	40.991	Cavia_aperea
ENSGMOG00000004228	usb1	99	49.550	ENSCPOG00000014325	USB1	83	49.550	Cavia_porcellus
ENSGMOG00000004228	usb1	99	50.673	ENSCCAG00000022132	USB1	84	50.673	Cebus_capucinus
ENSGMOG00000004228	usb1	99	51.121	ENSCATG00000032174	USB1	84	51.121	Cercocebus_atys
ENSGMOG00000004228	usb1	77	48.555	ENSCLAG00000007363	USB1	87	50.327	Chinchilla_lanigera
ENSGMOG00000004228	usb1	99	51.121	ENSCSAG00000004783	USB1	84	51.121	Chlorocebus_sabaeus
ENSGMOG00000004228	usb1	99	54.709	ENSCPBG00000026943	USB1	80	54.709	Chrysemys_picta_bellii
ENSGMOG00000004228	usb1	99	32.314	ENSCING00000011490	-	86	32.314	Ciona_intestinalis
ENSGMOG00000004228	usb1	98	31.579	ENSCSAVG00000000894	-	82	30.531	Ciona_savignyi
ENSGMOG00000004228	usb1	99	51.570	ENSCANG00000037135	USB1	84	51.570	Colobus_angolensis_palliatus
ENSGMOG00000004228	usb1	99	51.570	ENSCGRG00001011243	USB1	83	51.570	Cricetulus_griseus_chok1gshd
ENSGMOG00000004228	usb1	99	51.570	ENSCGRG00000013252	USB1	83	51.570	Cricetulus_griseus_crigri
ENSGMOG00000004228	usb1	99	64.865	ENSCSEG00000013881	usb1	80	64.865	Cynoglossus_semilaevis
ENSGMOG00000004228	usb1	99	69.027	ENSCVAG00000009252	usb1	97	69.469	Cyprinodon_variegatus
ENSGMOG00000004228	usb1	99	59.641	ENSDARG00000003841	usb1	81	59.641	Danio_rerio
ENSGMOG00000004228	usb1	99	52.466	ENSDORG00000001888	Usb1	84	52.466	Dipodomys_ordii
ENSGMOG00000004228	usb1	95	42.130	FBgn0037713	CG16790	81	40.845	Drosophila_melanogaster
ENSGMOG00000004228	usb1	99	43.049	ENSETEG00000019682	USB1	84	43.049	Echinops_telfairi
ENSGMOG00000004228	usb1	99	46.188	ENSEBUG00000005889	usb1	78	46.188	Eptatretus_burgeri
ENSGMOG00000004228	usb1	99	52.018	ENSEASG00005005484	USB1	84	52.018	Equus_asinus_asinus
ENSGMOG00000004228	usb1	99	52.018	ENSECAG00000019493	USB1	77	52.018	Equus_caballus
ENSGMOG00000004228	usb1	77	46.821	ENSEEUG00000000154	USB1	58	47.712	Erinaceus_europaeus
ENSGMOG00000004228	usb1	99	64.286	ENSELUG00000010974	usb1	82	64.286	Esox_lucius
ENSGMOG00000004228	usb1	99	49.776	ENSFCAG00000002693	USB1	84	49.776	Felis_catus
ENSGMOG00000004228	usb1	99	52.703	ENSFALG00000006876	USB1	83	52.703	Ficedula_albicollis
ENSGMOG00000004228	usb1	99	49.776	ENSFDAG00000010052	USB1	84	49.776	Fukomys_damarensis
ENSGMOG00000004228	usb1	86	66.495	ENSFHEG00000012334	usb1	78	67.010	Fundulus_heteroclitus
ENSGMOG00000004228	usb1	99	53.571	ENSGALG00000035604	USB1	88	53.571	Gallus_gallus
ENSGMOG00000004228	usb1	100	70.536	ENSGAFG00000021890	usb1	81	70.536	Gambusia_affinis
ENSGMOG00000004228	usb1	99	69.369	ENSGACG00000003257	usb1	80	69.369	Gasterosteus_aculeatus
ENSGMOG00000004228	usb1	99	55.605	ENSGAGG00000022572	USB1	82	55.605	Gopherus_agassizii
ENSGMOG00000004228	usb1	99	51.570	ENSGGOG00000017147	USB1	84	51.570	Gorilla_gorilla
ENSGMOG00000004228	usb1	100	72.646	ENSHBUG00000009823	usb1	80	72.646	Haplochromis_burtoni
ENSGMOG00000004228	usb1	99	50.673	ENSHGLG00000016078	USB1	82	50.673	Heterocephalus_glaber_female
ENSGMOG00000004228	usb1	99	50.673	ENSHGLG00100005562	USB1	82	50.673	Heterocephalus_glaber_male
ENSGMOG00000004228	usb1	98	71.689	ENSHCOG00000015633	usb1	86	71.749	Hippocampus_comes
ENSGMOG00000004228	usb1	99	60.987	ENSIPUG00000008601	usb1	77	60.987	Ictalurus_punctatus
ENSGMOG00000004228	usb1	99	50.673	ENSSTOG00000007548	USB1	82	50.673	Ictidomys_tridecemlineatus
ENSGMOG00000004228	usb1	99	51.802	ENSJJAG00000021859	Usb1	83	51.802	Jaculus_jaculus
ENSGMOG00000004228	usb1	99	69.369	ENSKMAG00000007200	usb1	78	69.369	Kryptolebias_marmoratus
ENSGMOG00000004228	usb1	97	68.056	ENSLBEG00000008452	usb1	68	68.056	Labrus_bergylta
ENSGMOG00000004228	usb1	84	56.842	ENSLACG00000000105	USB1	66	57.368	Latimeria_chalumnae
ENSGMOG00000004228	usb1	99	59.193	ENSLOCG00000000465	usb1	79	59.193	Lepisosteus_oculatus
ENSGMOG00000004228	usb1	99	42.174	ENSLAFG00000002267	USB1	83	42.174	Loxodonta_africana
ENSGMOG00000004228	usb1	99	51.121	ENSMFAG00000003926	USB1	84	51.121	Macaca_fascicularis
ENSGMOG00000004228	usb1	99	51.121	ENSMMUG00000022669	USB1	84	51.121	Macaca_mulatta
ENSGMOG00000004228	usb1	99	50.673	ENSMNEG00000042487	USB1	84	50.673	Macaca_nemestrina
ENSGMOG00000004228	usb1	99	51.121	ENSMLEG00000028756	USB1	84	51.121	Mandrillus_leucophaeus
ENSGMOG00000004228	usb1	99	73.874	ENSMAMG00000015092	usb1	80	73.874	Mastacembelus_armatus
ENSGMOG00000004228	usb1	100	71.749	ENSMZEG00005010008	usb1	80	71.749	Maylandia_zebra
ENSGMOG00000004228	usb1	99	52.018	ENSMAUG00000007832	Usb1	84	52.018	Mesocricetus_auratus
ENSGMOG00000004228	usb1	99	51.570	ENSMICG00000004900	USB1	84	51.570	Microcebus_murinus
ENSGMOG00000004228	usb1	99	53.363	ENSMOCG00000022647	Usb1	84	53.363	Microtus_ochrogaster
ENSGMOG00000004228	usb1	99	70.721	ENSMMOG00000000490	usb1	86	70.721	Mola_mola
ENSGMOG00000004228	usb1	97	52.055	ENSMODG00000014067	USB1	83	52.000	Monodelphis_domestica
ENSGMOG00000004228	usb1	100	70.404	ENSMALG00000005930	usb1	79	70.404	Monopterus_albus
ENSGMOG00000004228	usb1	99	52.915	MGP_CAROLIEiJ_G0031421	Usb1	99	50.000	Mus_caroli
ENSGMOG00000004228	usb1	99	52.915	ENSMUSG00000031792	Usb1	99	50.000	Mus_musculus
ENSGMOG00000004228	usb1	99	53.363	MGP_PahariEiJ_G0023019	Usb1	100	51.282	Mus_pahari
ENSGMOG00000004228	usb1	99	52.915	MGP_SPRETEiJ_G0032540	Usb1	84	52.915	Mus_spretus
ENSGMOG00000004228	usb1	99	50.673	ENSMPUG00000004684	USB1	80	50.673	Mustela_putorius_furo
ENSGMOG00000004228	usb1	99	52.018	ENSMLUG00000007400	USB1	97	52.018	Myotis_lucifugus
ENSGMOG00000004228	usb1	99	52.018	ENSNGAG00000009703	Usb1	83	52.018	Nannospalax_galili
ENSGMOG00000004228	usb1	96	68.692	ENSNBRG00000008747	usb1	100	68.692	Neolamprologus_brichardi
ENSGMOG00000004228	usb1	93	50.962	ENSNLEG00000003340	USB1	83	50.962	Nomascus_leucogenys
ENSGMOG00000004228	usb1	56	50.400	ENSOPRG00000011803	USB1	54	50.400	Ochotona_princeps
ENSGMOG00000004228	usb1	99	50.000	ENSODEG00000016214	USB1	83	50.000	Octodon_degus
ENSGMOG00000004228	usb1	99	73.423	ENSONIG00000011063	usb1	80	73.423	Oreochromis_niloticus
ENSGMOG00000004228	usb1	99	50.000	ENSOANG00000012118	USB1	94	50.000	Ornithorhynchus_anatinus
ENSGMOG00000004228	usb1	100	70.404	ENSORLG00000012479	usb1	82	70.404	Oryzias_latipes
ENSGMOG00000004228	usb1	100	69.955	ENSORLG00020018671	usb1	82	69.955	Oryzias_latipes_hni
ENSGMOG00000004228	usb1	100	69.955	ENSORLG00015009679	usb1	83	69.955	Oryzias_latipes_hsok
ENSGMOG00000004228	usb1	100	70.852	ENSOMEG00000012930	usb1	81	70.852	Oryzias_melastigma
ENSGMOG00000004228	usb1	99	48.430	ENSOGAG00000003273	USB1	83	48.430	Otolemur_garnettii
ENSGMOG00000004228	usb1	99	50.673	ENSOARG00000001107	USB1	85	50.673	Ovis_aries
ENSGMOG00000004228	usb1	99	51.121	ENSPPAG00000042137	USB1	84	51.121	Pan_paniscus
ENSGMOG00000004228	usb1	99	49.327	ENSPPRG00000024797	USB1	84	49.327	Panthera_pardus
ENSGMOG00000004228	usb1	99	48.879	ENSPTIG00000007506	USB1	84	48.879	Panthera_tigris_altaica
ENSGMOG00000004228	usb1	99	48.430	ENSPTRG00000008172	USB1	100	51.869	Pan_troglodytes
ENSGMOG00000004228	usb1	99	51.121	ENSPANG00000025138	USB1	84	51.121	Papio_anubis
ENSGMOG00000004228	usb1	99	61.086	ENSPKIG00000015109	usb1	75	61.086	Paramormyrops_kingsleyae
ENSGMOG00000004228	usb1	99	44.196	ENSPSIG00000004305	USB1	99	44.196	Pelodiscus_sinensis
ENSGMOG00000004228	usb1	99	61.991	ENSPMGG00000017725	usb1	85	61.991	Periophthalmus_magnuspinnatus
ENSGMOG00000004228	usb1	99	52.018	ENSPEMG00000016183	Usb1	82	52.018	Peromyscus_maniculatus_bairdii
ENSGMOG00000004228	usb1	99	46.222	ENSPMAG00000000462	usb1	95	46.222	Petromyzon_marinus
ENSGMOG00000004228	usb1	100	70.982	ENSPFOG00000011130	usb1	81	70.982	Poecilia_formosa
ENSGMOG00000004228	usb1	100	70.089	ENSPLAG00000009820	usb1	81	70.089	Poecilia_latipinna
ENSGMOG00000004228	usb1	100	70.982	ENSPMEG00000006402	usb1	81	70.982	Poecilia_mexicana
ENSGMOG00000004228	usb1	85	70.157	ENSPREG00000001047	usb1	77	70.681	Poecilia_reticulata
ENSGMOG00000004228	usb1	93	48.571	ENSPPYG00000007401	USB1	83	48.571	Pongo_abelii
ENSGMOG00000004228	usb1	99	51.121	ENSPCOG00000022612	USB1	84	51.121	Propithecus_coquereli
ENSGMOG00000004228	usb1	99	49.327	ENSPVAG00000004613	USB1	86	49.327	Pteropus_vampyrus
ENSGMOG00000004228	usb1	100	72.646	ENSPNYG00000022262	usb1	80	72.646	Pundamilia_nyererei
ENSGMOG00000004228	usb1	99	64.126	ENSPNAG00000011736	usb1	76	64.126	Pygocentrus_nattereri
ENSGMOG00000004228	usb1	99	52.466	ENSRNOG00000013216	Usb1	84	52.466	Rattus_norvegicus
ENSGMOG00000004228	usb1	99	47.982	ENSRBIG00000044466	USB1	100	51.402	Rhinopithecus_bieti
ENSGMOG00000004228	usb1	99	51.121	ENSRROG00000029211	USB1	84	51.121	Rhinopithecus_roxellana
ENSGMOG00000004228	usb1	99	51.121	ENSSBOG00000029362	USB1	84	51.121	Saimiri_boliviensis_boliviensis
ENSGMOG00000004228	usb1	97	49.541	ENSSHAG00000006993	USB1	88	49.776	Sarcophilus_harrisii
ENSGMOG00000004228	usb1	99	64.253	ENSSFOG00015023663	usb1	70	64.253	Scleropages_formosus
ENSGMOG00000004228	usb1	100	68.354	ENSSMAG00000015834	usb1	80	68.354	Scophthalmus_maximus
ENSGMOG00000004228	usb1	100	71.749	ENSSDUG00000002949	usb1	83	71.749	Seriola_dumerili
ENSGMOG00000004228	usb1	100	72.197	ENSSLDG00000014174	usb1	80	72.197	Seriola_lalandi_dorsalis
ENSGMOG00000004228	usb1	94	52.857	ENSSPUG00000006741	USB1	98	52.857	Sphenodon_punctatus
ENSGMOG00000004228	usb1	99	71.622	ENSSPAG00000007484	usb1	78	71.622	Stegastes_partitus
ENSGMOG00000004228	usb1	99	52.018	ENSSSCG00000002807	USB1	83	52.018	Sus_scrofa
ENSGMOG00000004228	usb1	95	54.717	ENSTGUG00000004792	USB1	87	52.915	Taeniopygia_guttata
ENSGMOG00000004228	usb1	99	70.721	ENSTRUG00000021069	usb1	83	70.721	Takifugu_rubripes
ENSGMOG00000004228	usb1	99	61.712	ENSTNIG00000000626	usb1	83	61.712	Tetraodon_nigroviridis
ENSGMOG00000004228	usb1	99	37.668	ENSTBEG00000001507	USB1	96	37.668	Tupaia_belangeri
ENSGMOG00000004228	usb1	99	52.018	ENSUAMG00000016823	USB1	83	52.018	Ursus_americanus
ENSGMOG00000004228	usb1	94	52.153	ENSUMAG00000021369	USB1	98	52.153	Ursus_maritimus
ENSGMOG00000004228	usb1	99	50.450	ENSVVUG00000023700	USB1	86	50.450	Vulpes_vulpes
ENSGMOG00000004228	usb1	96	53.917	ENSXETG00000013795	usb1	89	53.812	Xenopus_tropicalis
ENSGMOG00000004228	usb1	100	70.982	ENSXMAG00000024687	usb1	66	70.982	Xiphophorus_maculatus