EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSGMOG00000004437 (Gene tree)
Gene ID
-
Gene Symbol
pabpc1l
Alias
fi20g03|wu:fi20g03|zgc:55855
Full Name
poly(A) binding protein%2C cytoplasmic 1-like
Gene Type
protein_coding
Species
Gadus_morhua
Status
putative
Strand
Plus strand
Length
6398 bases
Position
chrGeneScaffold_4582:270845-277242
Accession
ZDB-GENE-030131-5836
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSGMOP00000005006PABPPF00658.186.1e-3011
ENSGMOP00000004968PABPPF00658.187.7e-3011
ENSGMOP00000004964PABPPF00658.187.7e-3011
ENSGMOP00000004952PABPPF00658.187.7e-3011
ENSGMOP00000004964RRM_5PF13893.61.6e-1011
ENSGMOP00000004968RRM_5PF13893.61.6e-1011
ENSGMOP00000004952RRM_5PF13893.61.6e-1011
ENSGMOP00000005006RRM_5PF13893.69.3e-1011
ENSGMOP00000004964RRM_1PF00076.222.1e-8614
ENSGMOP00000004964RRM_1PF00076.222.1e-8624
ENSGMOP00000004964RRM_1PF00076.222.1e-8634
ENSGMOP00000004964RRM_1PF00076.222.1e-8644
ENSGMOP00000004968RRM_1PF00076.222.2e-8614
ENSGMOP00000004968RRM_1PF00076.222.2e-8624
ENSGMOP00000004968RRM_1PF00076.222.2e-8634
ENSGMOP00000004968RRM_1PF00076.222.2e-8644
ENSGMOP00000004952RRM_1PF00076.222.2e-8614
ENSGMOP00000004952RRM_1PF00076.222.2e-8624
ENSGMOP00000004952RRM_1PF00076.222.2e-8634
ENSGMOP00000004952RRM_1PF00076.222.2e-8644
ENSGMOP00000005006RRM_1PF00076.224.4e-6413
ENSGMOP00000005006RRM_1PF00076.224.4e-6423
ENSGMOP00000005006RRM_1PF00076.224.4e-6433
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSGMOT00000005112-1863-ENSGMOP00000004968621 (aa)-UPI00023F0C19
ENSGMOT00000005096-1869-ENSGMOP00000004952623 (aa)-UPI00023F0C17
ENSGMOT00000005151-1644-ENSGMOP00000005006548 (aa)-UPI00023F0C1A
ENSGMOT00000005108-1869-ENSGMOP00000004964623 (aa)-UPI00023F0C18
Gene Model
Click here to download ENSGMOG00000004437's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSGMOG00000004437's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSGMOG00000004437pabpc1l8679.551ENSGMOG00000002448-8579.551
ENSGMOG00000004437pabpc1l6031.429ENSGMOG00000008843tia18031.429
ENSGMOG00000004437pabpc1l6032.530ENSGMOG00000003760elavl39232.530
ENSGMOG00000004437pabpc1l5935.912ENSGMOG00000002519sf3b45340.659
ENSGMOG00000004437pabpc1l9865.428ENSGMOG00000019025pabpc49765.590
ENSGMOG00000004437pabpc1l6932.184ENSGMOG00000005612tial19532.184
ENSGMOG00000004437pabpc1l9966.823ENSGMOG00000013448pabpc1a9967.033
ENSGMOG00000004437pabpc1l5433.735ENSGMOG00000006515elavl49133.735
ENSGMOG00000004437pabpc1l5336.047ENSGMOG00000002937celf3a6336.047
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSGMOG00000004437pabpc1l9868.679ENSG00000101104PABPC1L9875.926Homo_sapiens
ENSGMOG00000004437pabpc1l9978.812ENSAPOG00000010842pabpc1l9979.032Acanthochromis_polyacanthus
ENSGMOG00000004437pabpc1l9864.198ENSAMEG00000004099PABPC1L10064.198Ailuropoda_melanoleuca
ENSGMOG00000004437pabpc1l9787.409ENSACIG00000021004-9987.409Amphilophus_citrinellus
ENSGMOG00000004437pabpc1l9980.032ENSAOCG00000006167-9980.032Amphiprion_ocellaris
ENSGMOG00000004437pabpc1l9983.603ENSAPEG00000010558-9986.385Amphiprion_percula
ENSGMOG00000004437pabpc1l9982.770ENSATEG00000007428pabpc1l9982.931Anabas_testudineus
ENSGMOG00000004437pabpc1l9772.285ENSAPLG00000008415PABPC1L9972.303Anas_platyrhynchos
ENSGMOG00000004437pabpc1l10073.502ENSACAG00000011841PABPC1L9974.086Anolis_carolinensis
ENSGMOG00000004437pabpc1l9867.532ENSANAG00000026826PABPC1L9967.532Aotus_nancymaae
ENSGMOG00000004437pabpc1l9982.588ENSACLG00000024791pabpc1l9982.588Astatotilapia_calliptera
ENSGMOG00000004437pabpc1l9977.316ENSAMXG00000013552pabpc1l9977.316Astyanax_mexicanus
ENSGMOG00000004437pabpc1l6761.672ENSBTAG00000016849PABPC1L8761.672Bos_taurus
ENSGMOG00000004437pabpc1l5986.905ENSBTAG00000055300-10086.905Bos_taurus
ENSGMOG00000004437pabpc1l9868.019ENSCJAG00000017628PABPC1L9968.019Callithrix_jacchus
ENSGMOG00000004437pabpc1l5977.586ENSCJAG00000038506-9881.333Callithrix_jacchus
ENSGMOG00000004437pabpc1l9863.790ENSCAFG00000009573PABPC1L10063.790Canis_familiaris
ENSGMOG00000004437pabpc1l9969.032ENSCAFG00020013828PABPC1L10068.489Canis_lupus_dingo
ENSGMOG00000004437pabpc1l9768.317ENSCHIG00000025759PABPC1L9168.543Capra_hircus
ENSGMOG00000004437pabpc1l9867.208ENSTSYG00000006645PABPC1L9967.208Carlito_syrichta
ENSGMOG00000004437pabpc1l9763.787ENSCAPG00000014519PABPC1L9963.787Cavia_aperea
ENSGMOG00000004437pabpc1l9866.181ENSCPOG00000013633PABPC1L9966.181Cavia_porcellus
ENSGMOG00000004437pabpc1l9867.370ENSCCAG00000023338PABPC1L9968.019Cebus_capucinus
ENSGMOG00000004437pabpc1l9868.344ENSCATG00000034065PABPC1L9968.344Cercocebus_atys
ENSGMOG00000004437pabpc1l9865.484ENSCLAG00000005298PABPC1L9966.129Chinchilla_lanigera
ENSGMOG00000004437pabpc1l9868.618ENSCSAG00000014242PABPC1L9968.618Chlorocebus_sabaeus
ENSGMOG00000004437pabpc1l5380.597ENSCPBG00000007810-8380.597Chrysemys_picta_bellii
ENSGMOG00000004437pabpc1l7180.499ENSCPBG00000017755-9980.499Chrysemys_picta_bellii
ENSGMOG00000004437pabpc1l8278.824ENSCING00000002796-9950.895Ciona_intestinalis
ENSGMOG00000004437pabpc1l9857.911ENSCSAVG00000003102-10082.550Ciona_savignyi
ENSGMOG00000004437pabpc1l9860.000ENSCSAVG00000004246-9269.536Ciona_savignyi
ENSGMOG00000004437pabpc1l9865.280ENSCANG00000037530PABPC1L9965.287Colobus_angolensis_palliatus
ENSGMOG00000004437pabpc1l9961.685ENSCGRG00001021938Pabpc1l9961.685Cricetulus_griseus_chok1gshd
ENSGMOG00000004437pabpc1l9961.685ENSCGRG00000007946Pabpc1l9961.685Cricetulus_griseus_crigri
ENSGMOG00000004437pabpc1l9881.633ENSCSEG00000021295pabpc1l9981.633Cynoglossus_semilaevis
ENSGMOG00000004437pabpc1l9981.877ENSCVAG00000015943-9981.877Cyprinodon_variegatus
ENSGMOG00000004437pabpc1l9978.365ENSDARG00000002597pabpc1l8894.615Danio_rerio
ENSGMOG00000004437pabpc1l9870.921ENSDNOG00000048450PABPC1L9970.921Dasypus_novemcinctus
ENSGMOG00000004437pabpc1l9866.451ENSDORG00000001067Pabpc1l9966.451Dipodomys_ordii
ENSGMOG00000004437pabpc1l9676.016ENSETEG00000009969PABPC1L7276.016Echinops_telfairi
ENSGMOG00000004437pabpc1l5873.214ENSEASG00005023407-6873.214Equus_asinus_asinus
ENSGMOG00000004437pabpc1l5985.714ENSEASG00005023408-10085.714Equus_asinus_asinus
ENSGMOG00000004437pabpc1l6569.027ENSECAG00000040139-8566.807Equus_caballus
ENSGMOG00000004437pabpc1l9966.989ENSEEUG00000005978PABPC1L10066.989Erinaceus_europaeus
ENSGMOG00000004437pabpc1l9980.255ENSELUG00000001811pabpc1l9389.130Esox_lucius
ENSGMOG00000004437pabpc1l9969.481ENSFCAG00000011692PABPC1L10069.094Felis_catus
ENSGMOG00000004437pabpc1l8573.371ENSFALG00000005372PABPC1L9073.371Ficedula_albicollis
ENSGMOG00000004437pabpc1l9865.957ENSFDAG00000008291PABPC1L9966.124Fukomys_damarensis
ENSGMOG00000004437pabpc1l9983.226ENSFHEG00000003398pabpc1l9983.226Fundulus_heteroclitus
ENSGMOG00000004437pabpc1l8481.111ENSGALG00000004123PABPC1L9881.522Gallus_gallus
ENSGMOG00000004437pabpc1l9977.439ENSGAFG00000021057pabpc1l9977.439Gambusia_affinis
ENSGMOG00000004437pabpc1l9982.022ENSGACG00000002792pabpc1l10082.212Gasterosteus_aculeatus
ENSGMOG00000004437pabpc1l9974.840ENSGAGG00000000589PABPC1L9783.696Gopherus_agassizii
ENSGMOG00000004437pabpc1l9868.842ENSGGOG00000004584PABPC1L9968.842Gorilla_gorilla
ENSGMOG00000004437pabpc1l9982.588ENSHBUG00000006134pabpc1l9982.588Haplochromis_burtoni
ENSGMOG00000004437pabpc1l9866.990ENSHGLG00000008434PABPC1L9966.990Heterocephalus_glaber_female
ENSGMOG00000004437pabpc1l9866.990ENSHGLG00100012151PABPC1L9966.990Heterocephalus_glaber_male
ENSGMOG00000004437pabpc1l5983.708ENSHGLG00100019506-9887.342Heterocephalus_glaber_male
ENSGMOG00000004437pabpc1l9881.198ENSHCOG00000009270pabpc1l9981.198Hippocampus_comes
ENSGMOG00000004437pabpc1l5962.069ENSIPUG00000006780-8467.857Ictalurus_punctatus
ENSGMOG00000004437pabpc1l9977.440ENSIPUG00000012602pabpc1l9977.440Ictalurus_punctatus
ENSGMOG00000004437pabpc1l5962.069ENSIPUG00000006760-8767.857Ictalurus_punctatus
ENSGMOG00000004437pabpc1l9868.498ENSSTOG00000003739PABPC1L9968.498Ictidomys_tridecemlineatus
ENSGMOG00000004437pabpc1l9952.228ENSJJAG00000022406Pabpc1l9952.330Jaculus_jaculus
ENSGMOG00000004437pabpc1l9980.421ENSKMAG00000016847pabpc1l10080.421Kryptolebias_marmoratus
ENSGMOG00000004437pabpc1l9980.990ENSLBEG00000010084pabpc1l9980.990Labrus_bergylta
ENSGMOG00000004437pabpc1l9972.871ENSLACG00000005762PABPC1L9972.871Latimeria_chalumnae
ENSGMOG00000004437pabpc1l9980.861ENSLOCG00000007519pabpc1l9980.861Lepisosteus_oculatus
ENSGMOG00000004437pabpc1l9868.590ENSLAFG00000003553PABPC1L10068.590Loxodonta_africana
ENSGMOG00000004437pabpc1l9868.669ENSMFAG00000040365PABPC1L9968.669Macaca_fascicularis
ENSGMOG00000004437pabpc1l9868.019ENSMNEG00000032298PABPC1L9968.019Macaca_nemestrina
ENSGMOG00000004437pabpc1l9868.344ENSMLEG00000043139PABPC1L9968.344Mandrillus_leucophaeus
ENSGMOG00000004437pabpc1l9682.862ENSMAMG00000011854pabpc1l9782.862Mastacembelus_armatus
ENSGMOG00000004437pabpc1l9982.588ENSMZEG00005023713pabpc1l9982.588Maylandia_zebra
ENSGMOG00000004437pabpc1l9973.312ENSMGAG00000003674PABPC1L9973.312Meleagris_gallopavo
ENSGMOG00000004437pabpc1l9960.159ENSMOCG00000013186Pabpc1l9960.191Microtus_ochrogaster
ENSGMOG00000004437pabpc1l9981.583ENSMMOG00000020574-10081.583Mola_mola
ENSGMOG00000004437pabpc1l9671.664ENSMODG00000016198PABPC1L9971.901Monodelphis_domestica
ENSGMOG00000004437pabpc1l9681.983ENSMALG00000021622pabpc1l10081.983Monopterus_albus
ENSGMOG00000004437pabpc1l9961.093MGP_CAROLIEiJ_G0024627Pabpc1l10060.835Mus_caroli
ENSGMOG00000004437pabpc1l9961.415ENSMUSG00000054582Pabpc1l10060.968Mus_musculus
ENSGMOG00000004437pabpc1l9961.228MGP_PahariEiJ_G0026071Pabpc1l9961.254Mus_pahari
ENSGMOG00000004437pabpc1l9961.093MGP_SPRETEiJ_G0025549Pabpc1l10060.835Mus_spretus
ENSGMOG00000004437pabpc1l9968.760ENSMPUG00000017646PABPC1L10068.489Mustela_putorius_furo
ENSGMOG00000004437pabpc1l9766.453ENSMLUG00000006324PABPC1L9866.453Myotis_lucifugus
ENSGMOG00000004437pabpc1l9863.548ENSNGAG00000010458Pabpc1l9963.548Nannospalax_galili
ENSGMOG00000004437pabpc1l9787.740ENSNBRG00000016633pabpc1l9987.740Neolamprologus_brichardi
ENSGMOG00000004437pabpc1l8967.029ENSMEUG00000007905-8967.514Notamacropus_eugenii
ENSGMOG00000004437pabpc1l9868.608ENSOPRG00000011846PABPC1L9968.608Ochotona_princeps
ENSGMOG00000004437pabpc1l5779.375ENSODEG00000002920-9779.375Octodon_degus
ENSGMOG00000004437pabpc1l9862.029ENSODEG00000015482PABPC1L9962.029Octodon_degus
ENSGMOG00000004437pabpc1l9983.067ENSONIG00000017314pabpc1l9983.067Oreochromis_niloticus
ENSGMOG00000004437pabpc1l8962.857ENSOANG00000015793-10062.857Ornithorhynchus_anatinus
ENSGMOG00000004437pabpc1l9865.635ENSOCUG00000003005PABPC1L9965.794Oryctolagus_cuniculus
ENSGMOG00000004437pabpc1l9783.916ENSORLG00000010322pabpc1l9985.714Oryzias_latipes
ENSGMOG00000004437pabpc1l9783.916ENSORLG00020021193pabpc1l9985.714Oryzias_latipes_hni
ENSGMOG00000004437pabpc1l9783.916ENSORLG00015017018pabpc1l9984.524Oryzias_latipes_hsok
ENSGMOG00000004437pabpc1l9976.641ENSOMEG00000010789pabpc1l9976.641Oryzias_melastigma
ENSGMOG00000004437pabpc1l9967.834ENSOGAG00000032999PABPC1L9968.051Otolemur_garnettii
ENSGMOG00000004437pabpc1l9868.618ENSOARG00000004578PABPC1L9968.618Ovis_aries
ENSGMOG00000004437pabpc1l9868.842ENSPPAG00000039677PABPC1L9968.842Pan_paniscus
ENSGMOG00000004437pabpc1l6267.593ENSPPRG00000019327-9867.593Panthera_pardus
ENSGMOG00000004437pabpc1l9869.344ENSPTIG00000006524PABPC1L9969.357Panthera_tigris_altaica
ENSGMOG00000004437pabpc1l6676.235ENSPTRG00000013531PABPC1L9876.235Pan_troglodytes
ENSGMOG00000004437pabpc1l9868.344ENSPANG00000018788PABPC1L9968.344Papio_anubis
ENSGMOG00000004437pabpc1l5382.443ENSPKIG00000016810-9382.443Paramormyrops_kingsleyae
ENSGMOG00000004437pabpc1l9979.388ENSPKIG00000007322pabpc1l9979.388Paramormyrops_kingsleyae
ENSGMOG00000004437pabpc1l6781.055ENSPSIG00000013289PABPC1L9981.055Pelodiscus_sinensis
ENSGMOG00000004437pabpc1l7080.612ENSPMGG00000023121-9180.612Periophthalmus_magnuspinnatus
ENSGMOG00000004437pabpc1l6291.667ENSPMGG00000023117pabpc1l9991.667Periophthalmus_magnuspinnatus
ENSGMOG00000004437pabpc1l9959.459ENSPEMG00000020671Pabpc1l9960.417Peromyscus_maniculatus_bairdii
ENSGMOG00000004437pabpc1l9983.117ENSPFOG00000013241pabpc1l9983.117Poecilia_formosa
ENSGMOG00000004437pabpc1l9982.212ENSPLAG00000017490-9982.212Poecilia_latipinna
ENSGMOG00000004437pabpc1l6294.615ENSPLAG00000023686-9294.615Poecilia_latipinna
ENSGMOG00000004437pabpc1l9982.476ENSPMEG00000007677pabpc1l9982.476Poecilia_mexicana
ENSGMOG00000004437pabpc1l6294.615ENSPMEG00000009185-8894.615Poecilia_mexicana
ENSGMOG00000004437pabpc1l6689.806ENSPREG00000015886pabpc1l9989.806Poecilia_reticulata
ENSGMOG00000004437pabpc1l9868.506ENSPPYG00000011042PABPC1L9968.506Pongo_abelii
ENSGMOG00000004437pabpc1l6185.938ENSPCAG00000011787-7585.938Procavia_capensis
ENSGMOG00000004437pabpc1l9869.494ENSPCOG00000020630PABPC1L9969.494Propithecus_coquereli
ENSGMOG00000004437pabpc1l9968.344ENSPVAG00000012663PABPC1L9968.567Pteropus_vampyrus
ENSGMOG00000004437pabpc1l9787.740ENSPNYG00000004101pabpc1l9987.740Pundamilia_nyererei
ENSGMOG00000004437pabpc1l9972.364ENSPNAG00000021248pabpc1l9972.364Pygocentrus_nattereri
ENSGMOG00000004437pabpc1l9961.290ENSRNOG00000012750Pabpc1l9960.737Rattus_norvegicus
ENSGMOG00000004437pabpc1l9868.344ENSRBIG00000035381PABPC1L9968.344Rhinopithecus_bieti
ENSGMOG00000004437pabpc1l9868.182ENSRROG00000044498PABPC1L9968.182Rhinopithecus_roxellana
ENSGMOG00000004437pabpc1l9867.857ENSSBOG00000009532-9967.857Saimiri_boliviensis_boliviensis
ENSGMOG00000004437pabpc1l9767.423ENSSHAG00000011446PABPC1L10067.423Sarcophilus_harrisii
ENSGMOG00000004437pabpc1l9978.526ENSSFOG00015017304pabpc1l9978.526Scleropages_formosus
ENSGMOG00000004437pabpc1l9983.065ENSSMAG00000010516pabpc1l9893.798Scophthalmus_maximus
ENSGMOG00000004437pabpc1l9981.731ENSSDUG00000014743pabpc1l9981.994Seriola_dumerili
ENSGMOG00000004437pabpc1l10085.673ENSSLDG00000006981pabpc1l9893.780Seriola_lalandi_dorsalis
ENSGMOG00000004437pabpc1l9973.248ENSSPUG00000004233PABPC1L9973.248Sphenodon_punctatus
ENSGMOG00000004437pabpc1l9873.039ENSSPAG00000017137pabpc1l9483.090Stegastes_partitus
ENSGMOG00000004437pabpc1l9869.467ENSSSCG00000007382PABPC1L9969.467Sus_scrofa
ENSGMOG00000004437pabpc1l9972.170ENSTGUG00000005114PABPC1L10072.170Taeniopygia_guttata
ENSGMOG00000004437pabpc1l9681.549ENSTRUG00000011085pabpc1l9781.549Takifugu_rubripes
ENSGMOG00000004437pabpc1l9879.100ENSTNIG00000017903pabpc1l9879.100Tetraodon_nigroviridis
ENSGMOG00000004437pabpc1l9376.712ENSTBEG00000002851PABPC1L7976.712Tupaia_belangeri
ENSGMOG00000004437pabpc1l9367.119ENSTTRG00000007618PABPC1L10067.327Tursiops_truncatus
ENSGMOG00000004437pabpc1l9967.590ENSUAMG00000017682PABPC1L10067.532Ursus_americanus
ENSGMOG00000004437pabpc1l6673.554ENSUMAG00000025436PABPC1L9373.554Ursus_maritimus
ENSGMOG00000004437pabpc1l9875.099ENSVVUG00000018939PABPC1L10075.099Vulpes_vulpes
ENSGMOG00000004437pabpc1l10070.932ENSXETG00000022831pabpc1l10070.932Xenopus_tropicalis
ENSGMOG00000004437pabpc1l9886.842ENSXCOG00000005459pabpc1l9989.362Xiphophorus_couchianus
ENSGMOG00000004437pabpc1l9981.571ENSXMAG00000017135pabpc1l9981.571Xiphophorus_maculatus

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