EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGMOG00000004881 (Gene tree)
Gene ID: -
Gene Symbol: snrnp200
Alias: fb63a09|si:ch211-251j10.5|wu:fb63a09
Full Name: small nuclear ribonucleoprotein 200 (U5)
Gene Type: protein_coding
Species: Gadus_morhua
Status: putative
Strand: Minus strand
Length: 29272 bases
Position: chrGeneScaffold_3253:127585-156856
Accession: ZDB-GENE-081105-64
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGMOP00000005227	ResIII	PF04851.15	6.4e-26	1	2
ENSGMOP00000005227	ResIII	PF04851.15	6.4e-26	2	2
ENSGMOP00000005227	DEAD	PF00270.29	3.3e-53	1	2
ENSGMOP00000005227	DEAD	PF00270.29	3.3e-53	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGMOT00000005385	-	6423	-	ENSGMOP00000005227	2140 (aa)	-	UPI00023F0718

Gene Model

Click here to download ENSGMOG00000004881's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGMOG00000004881's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGMOG00000004881	snrnp200	57	33.070	ENSGMOG00000017436	hfm1	69	33.070
ENSGMOG00000004881	snrnp200	87	44.234	ENSGMOG00000018158	ascc3	75	47.423

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGMOG00000004881	snrnp200	99	89.626	ENSG00000144028	SNRNP200	100	89.673	Homo_sapiens
ENSGMOG00000004881	snrnp200	99	95.026	ENSAPOG00000010223	snrnp200	100	95.140	Acanthochromis_polyacanthus
ENSGMOG00000004881	snrnp200	99	89.673	ENSAMEG00000008996	SNRNP200	100	89.720	Ailuropoda_melanoleuca
ENSGMOG00000004881	snrnp200	97	94.433	ENSACIG00000001764	snrnp200	98	94.593	Amphilophus_citrinellus
ENSGMOG00000004881	snrnp200	99	94.791	ENSAOCG00000024593	snrnp200	100	94.907	Amphiprion_ocellaris
ENSGMOG00000004881	snrnp200	97	94.483	ENSAPEG00000012554	snrnp200	100	94.644	Amphiprion_percula
ENSGMOG00000004881	snrnp200	99	94.885	ENSATEG00000022522	snrnp200	100	95.000	Anabas_testudineus
ENSGMOG00000004881	snrnp200	99	89.600	ENSAPLG00000004313	SNRNP200	100	89.647	Anas_platyrhynchos
ENSGMOG00000004881	snrnp200	99	88.953	ENSACAG00000000434	SNRNP200	100	89.012	Anolis_carolinensis
ENSGMOG00000004881	snrnp200	99	86.853	ENSANAG00000036625	SNRNP200	100	86.900	Aotus_nancymaae
ENSGMOG00000004881	snrnp200	99	94.510	ENSACLG00000011188	snrnp200	100	94.626	Astatotilapia_calliptera
ENSGMOG00000004881	snrnp200	99	93.712	ENSAMXG00000005684	snrnp200	100	93.692	Astyanax_mexicanus
ENSGMOG00000004881	snrnp200	99	89.439	ENSBTAG00000000848	SNRNP200	100	89.486	Bos_taurus
ENSGMOG00000004881	snrnp200	99	89.626	ENSCJAG00000007514	SNRNP200	100	89.673	Callithrix_jacchus
ENSGMOG00000004881	snrnp200	99	88.920	ENSCAFG00020019979	SNRNP200	100	90.507	Canis_lupus_dingo
ENSGMOG00000004881	snrnp200	99	89.393	ENSCHIG00000020611	SNRNP200	100	89.439	Capra_hircus
ENSGMOG00000004881	snrnp200	99	89.673	ENSTSYG00000010467	SNRNP200	100	89.720	Carlito_syrichta
ENSGMOG00000004881	snrnp200	99	89.254	ENSCAPG00000017234	SNRNP200	99	89.301	Cavia_aperea
ENSGMOG00000004881	snrnp200	99	89.579	ENSCPOG00000006776	SNRNP200	100	89.626	Cavia_porcellus
ENSGMOG00000004881	snrnp200	99	89.626	ENSCCAG00000033962	SNRNP200	100	89.673	Cebus_capucinus
ENSGMOG00000004881	snrnp200	99	89.626	ENSCATG00000015790	SNRNP200	100	89.673	Cercocebus_atys
ENSGMOG00000004881	snrnp200	99	89.626	ENSCLAG00000004116	SNRNP200	100	89.673	Chinchilla_lanigera
ENSGMOG00000004881	snrnp200	99	89.673	ENSCSAG00000017369	SNRNP200	100	89.720	Chlorocebus_sabaeus
ENSGMOG00000004881	snrnp200	73	91.833	ENSCHOG00000012981	-	58	92.188	Choloepus_hoffmanni
ENSGMOG00000004881	snrnp200	99	89.687	ENSCPBG00000022571	SNRNP200	100	89.734	Chrysemys_picta_bellii
ENSGMOG00000004881	snrnp200	99	75.058	ENSCING00000005082	-	99	74.965	Ciona_intestinalis
ENSGMOG00000004881	snrnp200	94	89.414	ENSCANG00000033932	SNRNP200	100	89.414	Colobus_angolensis_palliatus
ENSGMOG00000004881	snrnp200	99	89.626	ENSCGRG00001022610	Snrnp200	100	89.673	Cricetulus_griseus_chok1gshd
ENSGMOG00000004881	snrnp200	99	89.127	ENSCGRG00000016472	Snrnp200	100	89.174	Cricetulus_griseus_crigri
ENSGMOG00000004881	snrnp200	99	93.779	ENSCSEG00000016399	snrnp200	100	93.779	Cynoglossus_semilaevis
ENSGMOG00000004881	snrnp200	99	89.299	ENSCVAG00000017631	snrnp200	100	89.439	Cyprinodon_variegatus
ENSGMOG00000004881	snrnp200	99	93.645	ENSDARG00000077536	snrnp200	100	93.645	Danio_rerio
ENSGMOG00000004881	snrnp200	99	88.318	ENSDNOG00000011227	SNRNP200	100	88.364	Dasypus_novemcinctus
ENSGMOG00000004881	snrnp200	99	87.127	ENSDORG00000005861	Snrnp200	100	87.174	Dipodomys_ordii
ENSGMOG00000004881	snrnp200	99	72.398	FBgn0263599	l(3)72Ab	100	72.305	Drosophila_melanogaster
ENSGMOG00000004881	snrnp200	95	88.650	ENSETEG00000000162	SNRNP200	74	88.736	Echinops_telfairi
ENSGMOG00000004881	snrnp200	83	79.301	ENSEBUG00000016524	snrnp200	95	79.301	Eptatretus_burgeri
ENSGMOG00000004881	snrnp200	99	88.879	ENSEASG00005001884	SNRNP200	100	88.739	Equus_asinus_asinus
ENSGMOG00000004881	snrnp200	99	89.766	ENSECAG00000019675	SNRNP200	100	89.813	Equus_caballus
ENSGMOG00000004881	snrnp200	88	100.000	ENSEEUG00000012178	SNRNP200	93	100.000	Erinaceus_europaeus
ENSGMOG00000004881	snrnp200	99	95.826	ENSELUG00000018948	snrnp200	100	95.796	Esox_lucius
ENSGMOG00000004881	snrnp200	99	89.720	ENSFCAG00000010699	SNRNP200	100	89.766	Felis_catus
ENSGMOG00000004881	snrnp200	94	84.071	ENSFALG00000001368	-	95	84.956	Ficedula_albicollis
ENSGMOG00000004881	snrnp200	99	89.439	ENSFDAG00000004683	SNRNP200	100	89.486	Fukomys_damarensis
ENSGMOG00000004881	snrnp200	99	91.916	ENSFHEG00000003786	snrnp200	100	92.056	Fundulus_heteroclitus
ENSGMOG00000004881	snrnp200	99	91.822	ENSGAFG00000010807	snrnp200	100	91.963	Gambusia_affinis
ENSGMOG00000004881	snrnp200	100	95.238	ENSGACG00000011474	snrnp200	99	95.425	Gasterosteus_aculeatus
ENSGMOG00000004881	snrnp200	95	92.800	ENSGAGG00000016069	SNRNP200	99	89.682	Gopherus_agassizii
ENSGMOG00000004881	snrnp200	99	89.626	ENSGGOG00000005174	SNRNP200	100	89.673	Gorilla_gorilla
ENSGMOG00000004881	snrnp200	97	91.889	ENSHBUG00000011322	snrnp200	99	92.098	Haplochromis_burtoni
ENSGMOG00000004881	snrnp200	99	89.486	ENSHGLG00000006654	SNRNP200	100	89.533	Heterocephalus_glaber_female
ENSGMOG00000004881	snrnp200	99	89.486	ENSHGLG00100018594	SNRNP200	100	89.533	Heterocephalus_glaber_male
ENSGMOG00000004881	snrnp200	99	89.673	ENSSTOG00000016351	SNRNP200	100	89.720	Ictidomys_tridecemlineatus
ENSGMOG00000004881	snrnp200	99	89.533	ENSJJAG00000023659	Snrnp200	100	89.579	Jaculus_jaculus
ENSGMOG00000004881	snrnp200	99	91.803	ENSKMAG00000003665	snrnp200	100	91.942	Kryptolebias_marmoratus
ENSGMOG00000004881	snrnp200	99	95.187	ENSLBEG00000021585	snrnp200	100	95.327	Labrus_bergylta
ENSGMOG00000004881	snrnp200	82	90.961	ENSLACG00000000226	SNRNP200	100	90.961	Latimeria_chalumnae
ENSGMOG00000004881	snrnp200	99	93.511	ENSLOCG00000015198	snrnp200	100	93.511	Lepisosteus_oculatus
ENSGMOG00000004881	snrnp200	99	89.626	ENSLAFG00000015626	SNRNP200	100	89.673	Loxodonta_africana
ENSGMOG00000004881	snrnp200	99	89.579	ENSMFAG00000040174	SNRNP200	99	91.279	Macaca_fascicularis
ENSGMOG00000004881	snrnp200	99	89.579	ENSMMUG00000023261	SNRNP200	100	89.626	Macaca_mulatta
ENSGMOG00000004881	snrnp200	99	89.533	ENSMNEG00000032398	SNRNP200	100	89.579	Macaca_nemestrina
ENSGMOG00000004881	snrnp200	99	89.626	ENSMLEG00000019083	SNRNP200	99	91.279	Mandrillus_leucophaeus
ENSGMOG00000004881	snrnp200	99	94.115	ENSMAMG00000007851	snrnp200	100	94.115	Mastacembelus_armatus
ENSGMOG00000004881	snrnp200	97	91.889	ENSMZEG00005010787	snrnp200	99	92.098	Maylandia_zebra
ENSGMOG00000004881	snrnp200	97	89.420	ENSMGAG00000001831	SNRNP200	99	89.395	Meleagris_gallopavo
ENSGMOG00000004881	snrnp200	99	89.673	ENSMAUG00000011825	Snrnp200	100	89.720	Mesocricetus_auratus
ENSGMOG00000004881	snrnp200	99	89.579	ENSMICG00000004710	SNRNP200	100	89.626	Microcebus_murinus
ENSGMOG00000004881	snrnp200	99	87.798	ENSMOCG00000011814	Snrnp200	100	87.845	Microtus_ochrogaster
ENSGMOG00000004881	snrnp200	99	93.008	ENSMMOG00000014167	snrnp200	100	93.131	Mola_mola
ENSGMOG00000004881	snrnp200	99	89.626	ENSMODG00000008475	SNRNP200	100	89.673	Monodelphis_domestica
ENSGMOG00000004881	snrnp200	99	95.026	ENSMALG00000001973	snrnp200	100	95.280	Monopterus_albus
ENSGMOG00000004881	snrnp200	99	89.626	MGP_CAROLIEiJ_G0024250	Snrnp200	100	89.673	Mus_caroli
ENSGMOG00000004881	snrnp200	99	89.673	ENSMUSG00000003660	Snrnp200	100	89.720	Mus_musculus
ENSGMOG00000004881	snrnp200	99	89.673	MGP_PahariEiJ_G0025695	Snrnp200	100	89.720	Mus_pahari
ENSGMOG00000004881	snrnp200	99	89.673	MGP_SPRETEiJ_G0025170	Snrnp200	100	90.659	Mus_spretus
ENSGMOG00000004881	snrnp200	99	89.720	ENSMPUG00000008949	SNRNP200	100	89.766	Mustela_putorius_furo
ENSGMOG00000004881	snrnp200	99	86.449	ENSMLUG00000027511	-	100	86.495	Myotis_lucifugus
ENSGMOG00000004881	snrnp200	99	89.267	ENSMLUG00000010493	SNRNP200	100	89.314	Myotis_lucifugus
ENSGMOG00000004881	snrnp200	99	89.626	ENSNGAG00000021993	Snrnp200	100	89.673	Nannospalax_galili
ENSGMOG00000004881	snrnp200	90	94.896	ENSNBRG00000017960	snrnp200	98	94.896	Neolamprologus_brichardi
ENSGMOG00000004881	snrnp200	99	85.336	ENSNLEG00000000025	SNRNP200	100	85.429	Nomascus_leucogenys
ENSGMOG00000004881	snrnp200	99	91.667	ENSMEUG00000010532	SNRNP200	79	91.667	Notamacropus_eugenii
ENSGMOG00000004881	snrnp200	96	88.587	ENSOPRG00000015464	SNRNP200	97	88.620	Ochotona_princeps
ENSGMOG00000004881	snrnp200	99	89.579	ENSODEG00000008366	SNRNP200	100	89.626	Octodon_degus
ENSGMOG00000004881	snrnp200	99	94.510	ENSONIG00000010714	snrnp200	100	94.626	Oreochromis_niloticus
ENSGMOG00000004881	snrnp200	99	89.533	ENSOCUG00000009864	SNRNP200	100	89.579	Oryctolagus_cuniculus
ENSGMOG00000004881	snrnp200	99	93.826	ENSORLG00000012286	snrnp200	100	94.060	Oryzias_latipes
ENSGMOG00000004881	snrnp200	99	93.779	ENSORLG00020004648	snrnp200	100	93.826	Oryzias_latipes_hni
ENSGMOG00000004881	snrnp200	99	93.826	ENSORLG00015019114	snrnp200	100	94.042	Oryzias_latipes_hsok
ENSGMOG00000004881	snrnp200	99	94.040	ENSOMEG00000011834	snrnp200	100	94.065	Oryzias_melastigma
ENSGMOG00000004881	snrnp200	99	89.673	ENSOGAG00000006879	SNRNP200	100	89.720	Otolemur_garnettii
ENSGMOG00000004881	snrnp200	99	88.603	ENSOARG00000013949	SNRNP200	100	88.650	Ovis_aries
ENSGMOG00000004881	snrnp200	99	89.626	ENSPPAG00000041559	SNRNP200	100	89.673	Pan_paniscus
ENSGMOG00000004881	snrnp200	99	89.720	ENSPPRG00000004435	SNRNP200	100	89.766	Panthera_pardus
ENSGMOG00000004881	snrnp200	99	89.299	ENSPTIG00000006380	SNRNP200	100	89.346	Panthera_tigris_altaica
ENSGMOG00000004881	snrnp200	99	89.626	ENSPTRG00000012230	SNRNP200	100	89.673	Pan_troglodytes
ENSGMOG00000004881	snrnp200	99	89.579	ENSPANG00000006017	SNRNP200	100	89.626	Papio_anubis
ENSGMOG00000004881	snrnp200	99	94.255	ENSPKIG00000014762	snrnp200	100	94.312	Paramormyrops_kingsleyae
ENSGMOG00000004881	snrnp200	99	88.744	ENSPSIG00000008580	SNRNP200	100	88.790	Pelodiscus_sinensis
ENSGMOG00000004881	snrnp200	99	89.579	ENSPCIG00000023050	SNRNP200	100	89.626	Phascolarctos_cinereus
ENSGMOG00000004881	snrnp200	99	94.302	ENSPFOG00000015110	snrnp200	100	94.442	Poecilia_formosa
ENSGMOG00000004881	snrnp200	97	94.560	ENSPLAG00000006711	snrnp200	99	94.725	Poecilia_latipinna
ENSGMOG00000004881	snrnp200	97	94.396	ENSPMEG00000021166	snrnp200	99	94.560	Poecilia_mexicana
ENSGMOG00000004881	snrnp200	99	94.486	ENSPREG00000008875	snrnp200	100	94.626	Poecilia_reticulata
ENSGMOG00000004881	snrnp200	99	89.626	ENSPPYG00000012068	SNRNP200	100	89.673	Pongo_abelii
ENSGMOG00000004881	snrnp200	97	95.513	ENSPCAG00000008536	SNRNP200	86	95.513	Procavia_capensis
ENSGMOG00000004881	snrnp200	99	89.626	ENSPCOG00000024608	SNRNP200	100	89.673	Propithecus_coquereli
ENSGMOG00000004881	snrnp200	95	90.194	ENSPVAG00000005860	SNRNP200	92	90.194	Pteropus_vampyrus
ENSGMOG00000004881	snrnp200	99	89.705	ENSPNYG00000017476	snrnp200	100	89.842	Pundamilia_nyererei
ENSGMOG00000004881	snrnp200	99	89.724	ENSPNAG00000010998	snrnp200	100	89.724	Pygocentrus_nattereri
ENSGMOG00000004881	snrnp200	99	89.673	ENSRNOG00000012157	Snrnp200	100	89.720	Rattus_norvegicus
ENSGMOG00000004881	snrnp200	99	89.626	ENSRBIG00000044690	-	100	89.673	Rhinopithecus_bieti
ENSGMOG00000004881	snrnp200	99	89.626	ENSRROG00000037952	-	100	89.673	Rhinopithecus_roxellana
ENSGMOG00000004881	snrnp200	99	89.626	ENSSBOG00000035471	SNRNP200	100	89.673	Saimiri_boliviensis_boliviensis
ENSGMOG00000004881	snrnp200	97	89.614	ENSSHAG00000000758	SNRNP200	99	89.588	Sarcophilus_harrisii
ENSGMOG00000004881	snrnp200	99	94.090	ENSSFOG00015018826	snrnp200	100	94.068	Scleropages_formosus
ENSGMOG00000004881	snrnp200	99	95.167	ENSSMAG00000005463	snrnp200	100	95.280	Scophthalmus_maximus
ENSGMOG00000004881	snrnp200	99	95.214	ENSSDUG00000021410	snrnp200	100	95.327	Seriola_dumerili
ENSGMOG00000004881	snrnp200	99	95.167	ENSSLDG00000010884	snrnp200	100	95.280	Seriola_lalandi_dorsalis
ENSGMOG00000004881	snrnp200	95	88.235	ENSSARG00000010728	SNRNP200	96	88.472	Sorex_araneus
ENSGMOG00000004881	snrnp200	99	89.813	ENSSPUG00000003726	-	100	89.907	Sphenodon_punctatus
ENSGMOG00000004881	snrnp200	99	95.167	ENSSPAG00000001842	snrnp200	100	95.280	Stegastes_partitus
ENSGMOG00000004881	snrnp200	99	89.766	ENSSSCG00000008127	SNRNP200	100	89.813	Sus_scrofa
ENSGMOG00000004881	snrnp200	99	81.005	ENSTGUG00000014475	-	100	81.066	Taeniopygia_guttata
ENSGMOG00000004881	snrnp200	99	94.369	ENSTRUG00000001307	snrnp200	100	94.486	Takifugu_rubripes
ENSGMOG00000004881	snrnp200	99	89.283	ENSTNIG00000004320	snrnp200	100	82.268	Tetraodon_nigroviridis
ENSGMOG00000004881	snrnp200	85	89.899	ENSTBEG00000003329	-	67	89.899	Tupaia_belangeri
ENSGMOG00000004881	snrnp200	99	89.486	ENSTTRG00000004983	SNRNP200	100	89.533	Tursiops_truncatus
ENSGMOG00000004881	snrnp200	75	83.366	ENSUAMG00000008395	-	95	83.656	Ursus_americanus
ENSGMOG00000004881	snrnp200	99	89.720	ENSUMAG00000012385	SNRNP200	100	89.766	Ursus_maritimus
ENSGMOG00000004881	snrnp200	87	94.643	ENSVPAG00000006434	SNRNP200	66	94.643	Vicugna_pacos
ENSGMOG00000004881	snrnp200	99	89.510	ENSVVUG00000026247	SNRNP200	100	89.557	Vulpes_vulpes
ENSGMOG00000004881	snrnp200	99	89.309	ENSXETG00000001243	snrnp200	100	89.309	Xenopus_tropicalis
ENSGMOG00000004881	snrnp200	97	94.647	ENSXMAG00000002058	snrnp200	98	94.807	Xiphophorus_maculatus