EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGMOG00000005557 (Gene tree)
Gene ID: -
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Gadus_morhua
Status: putative
Strand: Minus strand
Length: 17103 bases
Position: chrGeneScaffold_9:17737-34839
Accession: 17854
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGMOP00000005927	Upf2	PF04050.14	4.4e-32	1	1
ENSGMOP00000005927	MIF4G	PF02854.19	7.2e-73	1	3
ENSGMOP00000005927	MIF4G	PF02854.19	7.2e-73	2	3
ENSGMOP00000005927	MIF4G	PF02854.19	7.2e-73	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGMOT00000006100	UPF2-201	3810	-	ENSGMOP00000005927	1270 (aa)	-	UPI00023F093F

Gene Model

Click here to download ENSGMOG00000005557's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGMOG00000005557's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGMOG00000005557	UPF2	100	80.391	ENSG00000151461	UPF2	91	83.938	Homo_sapiens
ENSGMOG00000005557	UPF2	100	83.896	ENSAPOG00000015837	UPF2	90	85.391	Acanthochromis_polyacanthus
ENSGMOG00000005557	UPF2	91	83.549	ENSAMEG00000004586	UPF2	91	83.851	Ailuropoda_melanoleuca
ENSGMOG00000005557	UPF2	100	88.290	ENSACIG00000018078	UPF2	91	89.888	Amphilophus_citrinellus
ENSGMOG00000005557	UPF2	100	87.900	ENSAOCG00000016766	UPF2	91	89.465	Amphiprion_ocellaris
ENSGMOG00000005557	UPF2	100	87.978	ENSAPEG00000019084	UPF2	91	89.551	Amphiprion_percula
ENSGMOG00000005557	UPF2	100	88.171	ENSATEG00000021677	UPF2	90	89.301	Anabas_testudineus
ENSGMOG00000005557	UPF2	100	77.621	ENSAPLG00000010287	UPF2	90	82.317	Anas_platyrhynchos
ENSGMOG00000005557	UPF2	100	81.328	ENSACAG00000009259	UPF2	91	82.902	Anolis_carolinensis
ENSGMOG00000005557	UPF2	91	77.711	ENSANAG00000028451	UPF2	92	77.701	Aotus_nancymaae
ENSGMOG00000005557	UPF2	100	88.290	ENSACLG00000012696	UPF2	91	90.061	Astatotilapia_calliptera
ENSGMOG00000005557	UPF2	100	86.271	ENSAMXG00000013700	UPF2	90	88.591	Astyanax_mexicanus
ENSGMOG00000005557	UPF2	91	83.563	ENSBTAG00000000288	UPF2	91	83.851	Bos_taurus
ENSGMOG00000005557	UPF2	100	79.703	ENSCJAG00000020685	UPF2	91	83.938	Callithrix_jacchus
ENSGMOG00000005557	UPF2	91	83.549	ENSCAFG00000004839	UPF2	91	83.765	Canis_familiaris
ENSGMOG00000005557	UPF2	91	82.282	ENSCAFG00020005882	UPF2	88	86.096	Canis_lupus_dingo
ENSGMOG00000005557	UPF2	91	83.563	ENSCHIG00000020359	UPF2	91	83.851	Capra_hircus
ENSGMOG00000005557	UPF2	100	80.328	ENSTSYG00000000935	UPF2	91	83.765	Carlito_syrichta
ENSGMOG00000005557	UPF2	91	73.110	ENSCAPG00000016658	UPF2	94	72.318	Cavia_aperea
ENSGMOG00000005557	UPF2	91	81.100	ENSCPOG00000008809	UPF2	91	81.347	Cavia_porcellus
ENSGMOG00000005557	UPF2	100	75.098	ENSCCAG00000035991	UPF2	90	78.325	Cebus_capucinus
ENSGMOG00000005557	UPF2	100	80.187	ENSCATG00000032679	UPF2	91	83.938	Cercocebus_atys
ENSGMOG00000005557	UPF2	100	79.499	ENSCLAG00000011434	UPF2	91	83.679	Chinchilla_lanigera
ENSGMOG00000005557	UPF2	100	80.187	ENSCSAG00000013372	UPF2	91	83.938	Chlorocebus_sabaeus
ENSGMOG00000005557	UPF2	77	90.141	ENSCHOG00000000422	UPF2	76	89.930	Choloepus_hoffmanni
ENSGMOG00000005557	UPF2	100	79.734	ENSCPBG00000027823	UPF2	92	83.765	Chrysemys_picta_bellii
ENSGMOG00000005557	UPF2	78	49.022	ENSCSAVG00000007772	-	70	50.714	Ciona_savignyi
ENSGMOG00000005557	UPF2	100	75.932	ENSCANG00000040396	UPF2	91	78.866	Colobus_angolensis_palliatus
ENSGMOG00000005557	UPF2	91	83.520	ENSCGRG00001019347	Upf2	91	83.910	Cricetulus_griseus_chok1gshd
ENSGMOG00000005557	UPF2	91	83.520	ENSCGRG00000017993	Upf2	91	83.910	Cricetulus_griseus_crigri
ENSGMOG00000005557	UPF2	99	85.377	ENSCVAG00000006167	UPF2	97	85.362	Cyprinodon_variegatus
ENSGMOG00000005557	UPF2	100	80.250	ENSDNOG00000018160	UPF2	91	83.592	Dasypus_novemcinctus
ENSGMOG00000005557	UPF2	100	77.952	ENSDORG00000002478	Upf2	91	83.578	Dipodomys_ordii
ENSGMOG00000005557	UPF2	73	91.971	ENSETEG00000011583	-	62	91.667	Echinops_telfairi
ENSGMOG00000005557	UPF2	64	73.333	ENSEBUG00000012448	-	87	73.333	Eptatretus_burgeri
ENSGMOG00000005557	UPF2	100	79.609	ENSEASG00005019274	UPF2	91	83.851	Equus_asinus_asinus
ENSGMOG00000005557	UPF2	100	79.609	ENSECAG00000017022	UPF2	91	83.851	Equus_caballus
ENSGMOG00000005557	UPF2	76	73.955	ENSEEUG00000007819	UPF2	68	86.096	Erinaceus_europaeus
ENSGMOG00000005557	UPF2	100	86.169	ENSELUG00000012014	UPF2	91	87.435	Esox_lucius
ENSGMOG00000005557	UPF2	91	84.358	ENSFCAG00000005785	UPF2	91	82.902	Felis_catus
ENSGMOG00000005557	UPF2	90	84.170	ENSFALG00000001889	UPF2	89	83.420	Ficedula_albicollis
ENSGMOG00000005557	UPF2	91	83.076	ENSFDAG00000014348	UPF2	91	83.463	Fukomys_damarensis
ENSGMOG00000005557	UPF2	99	86.185	ENSFHEG00000009826	UPF2	91	88.179	Fundulus_heteroclitus
ENSGMOG00000005557	UPF2	100	81.392	ENSGALG00000033772	UPF2	91	83.751	Gallus_gallus
ENSGMOG00000005557	UPF2	100	85.569	ENSGAFG00000020867	UPF2	91	88.266	Gambusia_affinis
ENSGMOG00000005557	UPF2	100	87.529	ENSGACG00000001080	UPF2	91	90.078	Gasterosteus_aculeatus
ENSGMOG00000005557	UPF2	100	80.986	ENSGAGG00000002700	UPF2	91	83.592	Gopherus_agassizii
ENSGMOG00000005557	UPF2	100	80.391	ENSGGOG00000001479	UPF2	91	83.938	Gorilla_gorilla
ENSGMOG00000005557	UPF2	100	88.447	ENSHBUG00000004249	UPF2	91	90.147	Haplochromis_burtoni
ENSGMOG00000005557	UPF2	100	69.867	ENSHGLG00000003822	-	90	74.113	Heterocephalus_glaber_female
ENSGMOG00000005557	UPF2	100	79.186	ENSHGLG00000015176	-	91	83.333	Heterocephalus_glaber_female
ENSGMOG00000005557	UPF2	87	83.034	ENSHGLG00100010036	UPF2	93	80.394	Heterocephalus_glaber_male
ENSGMOG00000005557	UPF2	100	85.415	ENSHCOG00000004025	UPF2	90	86.713	Hippocampus_comes
ENSGMOG00000005557	UPF2	100	85.402	ENSIPUG00000015524	UPF2	90	87.716	Ictalurus_punctatus
ENSGMOG00000005557	UPF2	91	83.405	ENSSTOG00000013075	UPF2	91	83.578	Ictidomys_tridecemlineatus
ENSGMOG00000005557	UPF2	100	78.471	ENSJJAG00000004913	Upf2	91	83.492	Jaculus_jaculus
ENSGMOG00000005557	UPF2	99	85.714	ENSKMAG00000001071	UPF2	91	88.103	Kryptolebias_marmoratus
ENSGMOG00000005557	UPF2	100	87.782	ENSLBEG00000016394	-	90	89.042	Labrus_bergylta
ENSGMOG00000005557	UPF2	81	86.022	ENSLBEG00000000728	-	82	88.466	Labrus_bergylta
ENSGMOG00000005557	UPF2	90	77.358	ENSLACG00000015945	UPF2	91	76.415	Latimeria_chalumnae
ENSGMOG00000005557	UPF2	99	84.996	ENSLOCG00000015698	UPF2	91	87.122	Lepisosteus_oculatus
ENSGMOG00000005557	UPF2	100	80.187	ENSMFAG00000043865	UPF2	91	83.938	Macaca_fascicularis
ENSGMOG00000005557	UPF2	100	80.187	ENSMMUG00000008241	UPF2	91	83.938	Macaca_mulatta
ENSGMOG00000005557	UPF2	81	80.717	ENSMNEG00000008062	UPF2	88	84.751	Macaca_nemestrina
ENSGMOG00000005557	UPF2	100	78.555	ENSMLEG00000036120	UPF2	90	84.172	Mandrillus_leucophaeus
ENSGMOG00000005557	UPF2	100	87.938	ENSMAMG00000018276	UPF2	91	89.819	Mastacembelus_armatus
ENSGMOG00000005557	UPF2	100	88.290	ENSMZEG00005021595	UPF2	91	90.061	Maylandia_zebra
ENSGMOG00000005557	UPF2	99	81.113	ENSMGAG00000004573	UPF2	91	84.201	Meleagris_gallopavo
ENSGMOG00000005557	UPF2	100	78.499	ENSMAUG00000016512	Upf2	90	81.574	Mesocricetus_auratus
ENSGMOG00000005557	UPF2	95	84.694	ENSMICG00000001716	UPF2	90	85.427	Microcebus_murinus
ENSGMOG00000005557	UPF2	91	83.391	ENSMOCG00000008263	Upf2	91	83.391	Microtus_ochrogaster
ENSGMOG00000005557	UPF2	100	85.345	ENSMMOG00000006528	UPF2	91	86.922	Mola_mola
ENSGMOG00000005557	UPF2	91	83.563	ENSMODG00000016794	UPF2	91	84.024	Monodelphis_domestica
ENSGMOG00000005557	UPF2	100	87.959	ENSMALG00000002663	UPF2	91	88.648	Monopterus_albus
ENSGMOG00000005557	UPF2	100	80.423	MGP_CAROLIEiJ_G0023157	Upf2	99	83.479	Mus_caroli
ENSGMOG00000005557	UPF2	100	80.658	ENSMUSG00000043241	Upf2	99	83.365	Mus_musculus
ENSGMOG00000005557	UPF2	91	83.448	MGP_PahariEiJ_G0019217	Upf2	99	83.556	Mus_pahari
ENSGMOG00000005557	UPF2	100	80.893	MGP_SPRETEiJ_G0024075	Upf2	99	83.365	Mus_spretus
ENSGMOG00000005557	UPF2	91	83.549	ENSMPUG00000001064	UPF2	91	83.851	Mustela_putorius_furo
ENSGMOG00000005557	UPF2	91	82.877	ENSMLUG00000000228	UPF2	91	82.414	Myotis_lucifugus
ENSGMOG00000005557	UPF2	100	88.447	ENSNBRG00000013629	UPF2	91	90.147	Neolamprologus_brichardi
ENSGMOG00000005557	UPF2	100	80.265	ENSNLEG00000012058	UPF2	91	84.024	Nomascus_leucogenys
ENSGMOG00000005557	UPF2	72	90.845	ENSOPRG00000006801	-	73	90.845	Ochotona_princeps
ENSGMOG00000005557	UPF2	100	79.703	ENSODEG00000001290	UPF2	91	82.699	Octodon_degus
ENSGMOG00000005557	UPF2	100	88.368	ENSONIG00000017991	UPF2	91	89.974	Oreochromis_niloticus
ENSGMOG00000005557	UPF2	100	79.581	ENSOCUG00000006230	UPF2	91	83.605	Oryctolagus_cuniculus
ENSGMOG00000005557	UPF2	100	86.906	ENSORLG00000017189	UPF2	91	88.707	Oryzias_latipes
ENSGMOG00000005557	UPF2	100	86.906	ENSORLG00020005969	UPF2	91	88.879	Oryzias_latipes_hni
ENSGMOG00000005557	UPF2	100	86.906	ENSORLG00015005713	UPF2	91	88.793	Oryzias_latipes_hsok
ENSGMOG00000005557	UPF2	100	83.255	ENSOMEG00000023420	UPF2	88	85.160	Oryzias_melastigma
ENSGMOG00000005557	UPF2	100	80.703	ENSOGAG00000005796	UPF2	91	83.851	Otolemur_garnettii
ENSGMOG00000005557	UPF2	91	83.419	ENSOARG00000014587	UPF2	91	83.707	Ovis_aries
ENSGMOG00000005557	UPF2	100	78.288	ENSPPAG00000037953	UPF2	91	81.255	Pan_paniscus
ENSGMOG00000005557	UPF2	91	83.635	ENSPPRG00000000690	UPF2	91	82.902	Panthera_pardus
ENSGMOG00000005557	UPF2	91	83.635	ENSPTIG00000008867	UPF2	91	82.902	Panthera_tigris_altaica
ENSGMOG00000005557	UPF2	100	80.391	ENSPTRG00000002291	UPF2	91	83.938	Pan_troglodytes
ENSGMOG00000005557	UPF2	100	80.109	ENSPANG00000023399	UPF2	91	83.938	Papio_anubis
ENSGMOG00000005557	UPF2	100	84.555	ENSPKIG00000025502	UPF2	90	87.133	Paramormyrops_kingsleyae
ENSGMOG00000005557	UPF2	60	79.659	ENSPSIG00000015158	UPF2	81	83.568	Pelodiscus_sinensis
ENSGMOG00000005557	UPF2	100	84.025	ENSPMGG00000005259	UPF2	91	86.828	Periophthalmus_magnuspinnatus
ENSGMOG00000005557	UPF2	100	64.286	ENSPEMG00000015731	Upf2	89	84.581	Peromyscus_maniculatus_bairdii
ENSGMOG00000005557	UPF2	90	83.651	ENSPCIG00000006656	UPF2	91	83.910	Phascolarctos_cinereus
ENSGMOG00000005557	UPF2	100	86.193	ENSPFOG00000017118	UPF2	99	86.271	Poecilia_formosa
ENSGMOG00000005557	UPF2	100	86.115	ENSPLAG00000005094	UPF2	99	86.193	Poecilia_latipinna
ENSGMOG00000005557	UPF2	100	86.037	ENSPMEG00000017009	UPF2	99	86.115	Poecilia_mexicana
ENSGMOG00000005557	UPF2	100	85.290	ENSPREG00000021880	UPF2	91	87.792	Poecilia_reticulata
ENSGMOG00000005557	UPF2	65	83.254	ENSPPYG00000002089	-	99	83.433	Pongo_abelii
ENSGMOG00000005557	UPF2	85	74.244	ENSPCAG00000000684	UPF2	85	74.176	Procavia_capensis
ENSGMOG00000005557	UPF2	100	79.232	ENSPCOG00000021656	UPF2	91	81.369	Propithecus_coquereli
ENSGMOG00000005557	UPF2	91	76.137	ENSPVAG00000017286	UPF2	91	75.669	Pteropus_vampyrus
ENSGMOG00000005557	UPF2	100	85.870	ENSPNYG00000017096	UPF2	91	87.727	Pundamilia_nyererei
ENSGMOG00000005557	UPF2	100	86.193	ENSPNAG00000009357	UPF2	90	87.554	Pygocentrus_nattereri
ENSGMOG00000005557	UPF2	100	76.923	ENSRNOG00000023593	Upf2	98	95.455	Rattus_norvegicus
ENSGMOG00000005557	UPF2	100	79.141	ENSRBIG00000037780	UPF2	91	83.060	Rhinopithecus_bieti
ENSGMOG00000005557	UPF2	100	80.094	ENSRROG00000043547	UPF2	91	84.010	Rhinopithecus_roxellana
ENSGMOG00000005557	UPF2	100	79.688	ENSSBOG00000020012	UPF2	91	83.838	Saimiri_boliviensis_boliviensis
ENSGMOG00000005557	UPF2	100	82.697	ENSSFOG00015023788	upf2	91	87.241	Scleropages_formosus
ENSGMOG00000005557	UPF2	90	88.465	ENSSMAG00000007637	UPF2	90	88.286	Scophthalmus_maximus
ENSGMOG00000005557	UPF2	100	88.638	ENSSDUG00000017244	UPF2	90	89.301	Seriola_dumerili
ENSGMOG00000005557	UPF2	100	87.392	ENSSLDG00000016866	UPF2	90	87.750	Seriola_lalandi_dorsalis
ENSGMOG00000005557	UPF2	100	76.887	ENSSARG00000008615	UPF2	91	82.124	Sorex_araneus
ENSGMOG00000005557	UPF2	100	78.890	ENSSPUG00000014544	UPF2	89	80.656	Sphenodon_punctatus
ENSGMOG00000005557	UPF2	68	83.295	ENSSSCG00000011117	-	99	83.238	Sus_scrofa
ENSGMOG00000005557	UPF2	90	84.229	ENSTGUG00000002163	-	91	83.492	Taeniopygia_guttata
ENSGMOG00000005557	UPF2	100	86.781	ENSTRUG00000007519	UPF2	90	88.352	Takifugu_rubripes
ENSGMOG00000005557	UPF2	93	72.819	ENSTBEG00000012679	UPF2	84	75.843	Tupaia_belangeri
ENSGMOG00000005557	UPF2	91	83.333	ENSTTRG00000016388	UPF2	91	83.679	Tursiops_truncatus
ENSGMOG00000005557	UPF2	78	95.506	ENSUAMG00000023560	UPF2	85	95.506	Ursus_americanus
ENSGMOG00000005557	UPF2	91	83.635	ENSUMAG00000012953	UPF2	86	83.938	Ursus_maritimus
ENSGMOG00000005557	UPF2	74	96.774	ENSVPAG00000006763	UPF2	74	96.774	Vicugna_pacos
ENSGMOG00000005557	UPF2	91	83.549	ENSVVUG00000006166	UPF2	91	83.765	Vulpes_vulpes
ENSGMOG00000005557	UPF2	100	75.307	ENSXETG00000033103	UPF2	91	79.795	Xenopus_tropicalis
ENSGMOG00000005557	UPF2	100	85.725	ENSXCOG00000011604	UPF2	91	88.438	Xiphophorus_couchianus
ENSGMOG00000005557	UPF2	100	85.725	ENSXMAG00000017209	UPF2	91	88.438	Xiphophorus_maculatus