EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGMOG00000006396 (Gene tree)
Gene ID: -
Gene Symbol: xrn1
Alias: wu:fk92c07|zgc:63635
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Gadus_morhua
Status: putative
Strand: Plus strand
Length: 30025 bases
Position: chrGeneScaffold_2508:23678-53702
Accession: ZDB-GENE-040426-1203
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGMOP00000006840	XRN_N	PF03159.18	5.1e-95	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGMOT00000007038	-	5004	-	ENSGMOP00000006840	1667 (aa)	-	UPI00023F0D2F

Gene Model

Click here to download ENSGMOG00000006396's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGMOG00000006396's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGMOG00000006396	xrn1	83	68.201	ENSG00000114127	XRN1	96	94.175	Homo_sapiens
ENSGMOG00000006396	xrn1	88	75.885	ENSAPOG00000000622	xrn1	94	76.645	Acanthochromis_polyacanthus
ENSGMOG00000006396	xrn1	80	67.529	ENSAMEG00000012538	XRN1	82	68.030	Ailuropoda_melanoleuca
ENSGMOG00000006396	xrn1	84	74.753	ENSACIG00000001057	xrn1	93	74.013	Amphilophus_citrinellus
ENSGMOG00000006396	xrn1	88	75.433	ENSAOCG00000014097	xrn1	95	75.420	Amphiprion_ocellaris
ENSGMOG00000006396	xrn1	88	75.802	ENSAPEG00000006620	xrn1	90	75.473	Amphiprion_percula
ENSGMOG00000006396	xrn1	84	73.339	ENSATEG00000009752	xrn1	91	72.600	Anabas_testudineus
ENSGMOG00000006396	xrn1	82	68.136	ENSAPLG00000004905	XRN1	82	67.542	Anas_platyrhynchos
ENSGMOG00000006396	xrn1	83	68.456	ENSACAG00000004985	XRN1	81	67.494	Anolis_carolinensis
ENSGMOG00000006396	xrn1	83	68.368	ENSANAG00000029013	XRN1	99	69.700	Aotus_nancymaae
ENSGMOG00000006396	xrn1	88	74.795	ENSACLG00000004806	xrn1	90	74.138	Astatotilapia_calliptera
ENSGMOG00000006396	xrn1	88	71.370	ENSAMXG00000019370	xrn1	95	96.117	Astyanax_mexicanus
ENSGMOG00000006396	xrn1	83	67.504	ENSBTAG00000011524	XRN1	84	68.090	Bos_taurus
ENSGMOG00000006396	xrn1	69	38.051	WBGene00012730	xrn-1	79	36.504	Caenorhabditis_elegans
ENSGMOG00000006396	xrn1	83	68.368	ENSCJAG00000001872	XRN1	84	68.368	Callithrix_jacchus
ENSGMOG00000006396	xrn1	80	68.876	ENSCAFG00000007783	XRN1	84	68.399	Canis_familiaris
ENSGMOG00000006396	xrn1	80	68.117	ENSCAFG00020009120	XRN1	99	74.563	Canis_lupus_dingo
ENSGMOG00000006396	xrn1	83	67.588	ENSCHIG00000019192	XRN1	82	68.174	Capra_hircus
ENSGMOG00000006396	xrn1	83	67.726	ENSTSYG00000002705	XRN1	84	68.033	Carlito_syrichta
ENSGMOG00000006396	xrn1	55	58.456	ENSCAPG00000004604	-	99	59.539	Cavia_aperea
ENSGMOG00000006396	xrn1	83	68.368	ENSCCAG00000034800	XRN1	99	76.789	Cebus_capucinus
ENSGMOG00000006396	xrn1	80	68.452	ENSCATG00000041794	XRN1	84	68.452	Cercocebus_atys
ENSGMOG00000006396	xrn1	83	67.893	ENSCLAG00000001451	XRN1	99	76.789	Chinchilla_lanigera
ENSGMOG00000006396	xrn1	79	68.368	ENSCSAG00000011265	XRN1	84	68.368	Chlorocebus_sabaeus
ENSGMOG00000006396	xrn1	67	51.531	ENSCSAVG00000008584	-	92	51.277	Ciona_savignyi
ENSGMOG00000006396	xrn1	80	68.368	ENSCANG00000037495	XRN1	99	76.471	Colobus_angolensis_palliatus
ENSGMOG00000006396	xrn1	83	67.699	ENSCGRG00001019411	Xrn1	99	76.312	Cricetulus_griseus_chok1gshd
ENSGMOG00000006396	xrn1	83	67.699	ENSCGRG00000012464	Xrn1	99	76.312	Cricetulus_griseus_crigri
ENSGMOG00000006396	xrn1	84	71.323	ENSCSEG00000021285	xrn1	94	97.115	Cynoglossus_semilaevis
ENSGMOG00000006396	xrn1	66	79.476	ENSCVAG00000013089	xrn1	99	79.476	Cyprinodon_variegatus
ENSGMOG00000006396	xrn1	87	74.874	ENSDARG00000091652	xrn1	98	78.013	Danio_rerio
ENSGMOG00000006396	xrn1	82	67.833	ENSDORG00000013833	Xrn1	83	68.140	Dipodomys_ordii
ENSGMOG00000006396	xrn1	66	42.059	FBgn0020261	pcm	67	42.236	Drosophila_melanogaster
ENSGMOG00000006396	xrn1	66	72.973	ENSETEG00000003978	XRN1	70	72.973	Echinops_telfairi
ENSGMOG00000006396	xrn1	80	67.950	ENSEASG00005002687	XRN1	99	76.508	Equus_asinus_asinus
ENSGMOG00000006396	xrn1	80	68.033	ENSECAG00000008301	XRN1	84	68.395	Equus_caballus
ENSGMOG00000006396	xrn1	73	71.429	ENSEEUG00000011323	XRN1	75	63.014	Erinaceus_europaeus
ENSGMOG00000006396	xrn1	87	76.411	ENSELUG00000000169	xrn1	87	76.263	Esox_lucius
ENSGMOG00000006396	xrn1	80	63.180	ENSFCAG00000027589	XRN1	98	79.601	Felis_catus
ENSGMOG00000006396	xrn1	84	67.550	ENSFALG00000007021	XRN1	81	67.632	Ficedula_albicollis
ENSGMOG00000006396	xrn1	80	67.893	ENSFDAG00000020494	XRN1	99	76.948	Fukomys_damarensis
ENSGMOG00000006396	xrn1	84	68.600	ENSGALG00000002706	XRN1	81	68.295	Gallus_gallus
ENSGMOG00000006396	xrn1	88	75.452	ENSGACG00000014328	xrn1	88	74.713	Gasterosteus_aculeatus
ENSGMOG00000006396	xrn1	78	68.342	ENSGAGG00000017535	XRN1	80	68.368	Gopherus_agassizii
ENSGMOG00000006396	xrn1	83	68.368	ENSGGOG00000008047	XRN1	84	68.368	Gorilla_gorilla
ENSGMOG00000006396	xrn1	88	73.213	ENSHBUG00000005908	xrn1	98	73.292	Haplochromis_burtoni
ENSGMOG00000006396	xrn1	83	67.893	ENSHGLG00000014476	XRN1	99	76.630	Heterocephalus_glaber_female
ENSGMOG00000006396	xrn1	83	67.893	ENSHGLG00100015130	XRN1	99	76.630	Heterocephalus_glaber_male
ENSGMOG00000006396	xrn1	87	73.124	ENSHCOG00000014062	xrn1	94	72.712	Hippocampus_comes
ENSGMOG00000006396	xrn1	87	74.161	ENSIPUG00000015229	xrn1	88	74.245	Ictalurus_punctatus
ENSGMOG00000006396	xrn1	80	68.117	ENSSTOG00000013552	XRN1	99	76.630	Ictidomys_tridecemlineatus
ENSGMOG00000006396	xrn1	81	67.181	ENSJJAG00000010863	Xrn1	99	74.834	Jaculus_jaculus
ENSGMOG00000006396	xrn1	88	74.374	ENSKMAG00000021356	xrn1	95	81.156	Kryptolebias_marmoratus
ENSGMOG00000006396	xrn1	84	75.997	ENSLBEG00000018656	xrn1	97	98.058	Labrus_bergylta
ENSGMOG00000006396	xrn1	83	69.270	ENSLACG00000009020	XRN1	81	68.850	Latimeria_chalumnae
ENSGMOG00000006396	xrn1	87	72.597	ENSLOCG00000007944	xrn1	87	72.367	Lepisosteus_oculatus
ENSGMOG00000006396	xrn1	62	69.347	ENSLAFG00000015426	XRN1	100	69.841	Loxodonta_africana
ENSGMOG00000006396	xrn1	80	68.452	ENSMFAG00000032599	XRN1	84	68.452	Macaca_fascicularis
ENSGMOG00000006396	xrn1	80	68.452	ENSMMUG00000014038	XRN1	84	68.452	Macaca_mulatta
ENSGMOG00000006396	xrn1	80	68.368	ENSMNEG00000034217	XRN1	84	68.368	Macaca_nemestrina
ENSGMOG00000006396	xrn1	84	75.082	ENSMAMG00000013219	xrn1	94	80.550	Mastacembelus_armatus
ENSGMOG00000006396	xrn1	88	74.795	ENSMZEG00005015099	xrn1	90	74.220	Maylandia_zebra
ENSGMOG00000006396	xrn1	82	66.780	ENSMGAG00000006333	XRN1	81	66.468	Meleagris_gallopavo
ENSGMOG00000006396	xrn1	83	67.923	ENSMICG00000048948	XRN1	96	94.175	Microcebus_murinus
ENSGMOG00000006396	xrn1	57	75.994	ENSMOCG00000008665	Xrn1	99	75.040	Microtus_ochrogaster
ENSGMOG00000006396	xrn1	83	68.818	ENSMODG00000021236	XRN1	84	67.713	Monodelphis_domestica
ENSGMOG00000006396	xrn1	87	73.495	ENSMALG00000004098	xrn1	89	73.579	Monopterus_albus
ENSGMOG00000006396	xrn1	84	62.023	MGP_CAROLIEiJ_G0032535	Xrn1	100	95.000	Mus_caroli
ENSGMOG00000006396	xrn1	84	67.185	ENSMUSG00000032410	Xrn1	100	95.000	Mus_musculus
ENSGMOG00000006396	xrn1	84	67.438	MGP_PahariEiJ_G0015404	Xrn1	100	95.000	Mus_pahari
ENSGMOG00000006396	xrn1	84	67.630	MGP_SPRETEiJ_G0033678	Xrn1	100	95.000	Mus_spretus
ENSGMOG00000006396	xrn1	80	68.033	ENSMPUG00000012040	XRN1	84	68.509	Mustela_putorius_furo
ENSGMOG00000006396	xrn1	84	67.657	ENSMLUG00000016885	XRN1	83	67.657	Myotis_lucifugus
ENSGMOG00000006396	xrn1	56	71.429	ENSNGAG00000023964	Xrn1	99	72.611	Nannospalax_galili
ENSGMOG00000006396	xrn1	80	68.117	ENSNLEG00000004726	XRN1	84	68.117	Nomascus_leucogenys
ENSGMOG00000006396	xrn1	61	94.845	ENSMEUG00000014473	-	61	95.146	Notamacropus_eugenii
ENSGMOG00000006396	xrn1	61	65.385	ENSOPRG00000007337	-	61	66.346	Ochotona_princeps
ENSGMOG00000006396	xrn1	88	74.445	ENSONIG00000016673	xrn1	89	74.281	Oreochromis_niloticus
ENSGMOG00000006396	xrn1	74	65.443	ENSOANG00000006735	XRN1	82	65.217	Ornithorhynchus_anatinus
ENSGMOG00000006396	xrn1	83	68.338	ENSOCUG00000001861	XRN1	82	68.839	Oryctolagus_cuniculus
ENSGMOG00000006396	xrn1	88	74.959	ENSORLG00000013005	xrn1	89	74.795	Oryzias_latipes
ENSGMOG00000006396	xrn1	88	75.123	ENSORLG00020005559	xrn1	90	74.877	Oryzias_latipes_hni
ENSGMOG00000006396	xrn1	88	74.877	ENSORLG00015022523	xrn1	90	74.631	Oryzias_latipes_hsok
ENSGMOG00000006396	xrn1	88	75.247	ENSOMEG00000015397	xrn1	93	74.671	Oryzias_melastigma
ENSGMOG00000006396	xrn1	83	66.109	ENSOGAG00000000170	XRN1	84	66.583	Otolemur_garnettii
ENSGMOG00000006396	xrn1	84	66.997	ENSOARG00000006343	XRN1	84	67.574	Ovis_aries
ENSGMOG00000006396	xrn1	83	68.285	ENSPPAG00000010180	XRN1	84	68.285	Pan_paniscus
ENSGMOG00000006396	xrn1	80	68.144	ENSPPRG00000007125	XRN1	84	68.729	Panthera_pardus
ENSGMOG00000006396	xrn1	80	68.144	ENSPTIG00000021081	XRN1	84	68.729	Panthera_tigris_altaica
ENSGMOG00000006396	xrn1	83	68.285	ENSPTRG00000015482	XRN1	84	68.285	Pan_troglodytes
ENSGMOG00000006396	xrn1	83	68.452	ENSPANG00000010638	XRN1	84	68.452	Papio_anubis
ENSGMOG00000006396	xrn1	83	67.780	ENSPSIG00000018050	XRN1	82	67.446	Pelodiscus_sinensis
ENSGMOG00000006396	xrn1	57	80.868	ENSPMGG00000002648	xrn1	99	82.476	Periophthalmus_magnuspinnatus
ENSGMOG00000006396	xrn1	57	76.312	ENSPEMG00000020610	Xrn1	99	76.312	Peromyscus_maniculatus_bairdii
ENSGMOG00000006396	xrn1	63	78.161	ENSPMAG00000002975	xrn1	90	78.161	Petromyzon_marinus
ENSGMOG00000006396	xrn1	83	68.781	ENSPCIG00000028735	XRN1	99	75.955	Phascolarctos_cinereus
ENSGMOG00000006396	xrn1	80	74.755	ENSPFOG00000013932	xrn1	88	74.510	Poecilia_formosa
ENSGMOG00000006396	xrn1	80	74.979	ENSPLAG00000021653	xrn1	88	74.733	Poecilia_latipinna
ENSGMOG00000006396	xrn1	78	75.041	ENSPMEG00000003076	xrn1	84	74.386	Poecilia_mexicana
ENSGMOG00000006396	xrn1	88	74.489	ENSPREG00000021147	xrn1	92	74.053	Poecilia_reticulata
ENSGMOG00000006396	xrn1	83	68.452	ENSPPYG00000014172	XRN1	84	68.452	Pongo_abelii
ENSGMOG00000006396	xrn1	71	67.568	ENSPCAG00000005638	XRN1	79	67.568	Procavia_capensis
ENSGMOG00000006396	xrn1	83	67.699	ENSPCOG00000013089	XRN1	99	76.312	Propithecus_coquereli
ENSGMOG00000006396	xrn1	76	66.432	ENSPVAG00000016265	XRN1	75	85.260	Pteropus_vampyrus
ENSGMOG00000006396	xrn1	88	74.692	ENSPNYG00000010570	xrn1	91	75.082	Pundamilia_nyererei
ENSGMOG00000006396	xrn1	84	71.885	ENSPNAG00000023531	xrn1	90	71.581	Pygocentrus_nattereri
ENSGMOG00000006396	xrn1	83	67.950	ENSRNOG00000042951	Xrn1	82	67.950	Rattus_norvegicus
ENSGMOG00000006396	xrn1	80	68.201	ENSRBIG00000041227	XRN1	84	68.201	Rhinopithecus_bieti
ENSGMOG00000006396	xrn1	65	53.533	YGL173C	XRN1	69	53.533	Saccharomyces_cerevisiae
ENSGMOG00000006396	xrn1	83	68.536	ENSSBOG00000029561	XRN1	84	68.536	Saimiri_boliviensis_boliviensis
ENSGMOG00000006396	xrn1	82	68.116	ENSSHAG00000016207	XRN1	84	67.519	Sarcophilus_harrisii
ENSGMOG00000006396	xrn1	84	73.185	ENSSFOG00015024211	xrn1	86	72.915	Scleropages_formosus
ENSGMOG00000006396	xrn1	88	76.437	ENSSMAG00000016534	xrn1	89	75.944	Scophthalmus_maximus
ENSGMOG00000006396	xrn1	84	75.473	ENSSDUG00000010306	xrn1	93	74.733	Seriola_dumerili
ENSGMOG00000006396	xrn1	87	74.486	ENSSLDG00000021543	xrn1	91	74.938	Seriola_lalandi_dorsalis
ENSGMOG00000006396	xrn1	60	64.840	ENSSARG00000007741	-	75	64.219	Sorex_araneus
ENSGMOG00000006396	xrn1	84	67.910	ENSTGUG00000008498	XRN1	84	67.993	Taeniopygia_guttata
ENSGMOG00000006396	xrn1	84	74.353	ENSTRUG00000004895	xrn1	97	78.571	Takifugu_rubripes
ENSGMOG00000006396	xrn1	88	71.217	ENSTNIG00000017615	xrn1	89	71.217	Tetraodon_nigroviridis
ENSGMOG00000006396	xrn1	66	85.484	ENSTBEG00000003256	XRN1	75	84.399	Tupaia_belangeri
ENSGMOG00000006396	xrn1	81	65.105	ENSTTRG00000012914	XRN1	82	65.690	Tursiops_truncatus
ENSGMOG00000006396	xrn1	80	66.276	ENSUAMG00000001608	XRN1	99	73.768	Ursus_americanus
ENSGMOG00000006396	xrn1	80	67.950	ENSUMAG00000013625	XRN1	84	68.452	Ursus_maritimus
ENSGMOG00000006396	xrn1	83	64.740	ENSVPAG00000004690	XRN1	84	65.410	Vicugna_pacos
ENSGMOG00000006396	xrn1	80	68.117	ENSVVUG00000024461	XRN1	99	76.948	Vulpes_vulpes
ENSGMOG00000006396	xrn1	83	68.231	ENSXETG00000000619	xrn1	99	85.302	Xenopus_tropicalis
ENSGMOG00000006396	xrn1	87	75.897	ENSXCOG00000007917	xrn1	90	75.563	Xiphophorus_couchianus
ENSGMOG00000006396	xrn1	84	76.023	ENSXMAG00000018320	xrn1	92	76.190	Xiphophorus_maculatus