EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGMOG00000006773 (Gene tree)
Gene ID: -
Gene Symbol: sf3b1
Alias: tst|wu:fb99f09
Full Name: splicing factor 3b%2C subunit 1
Gene Type: protein_coding
Species: Gadus_morhua
Status: putative
Strand: Minus strand
Length: 13727 bases
Position: chrGeneScaffold_2237:36182-49908
Accession: ZDB-GENE-040827-3
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGMOP00000007216	SF3b1	PF08920.10	2e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGMOT00000007420	-	3939	-	ENSGMOP00000007216	1312 (aa)	-	UPI00023F0EB9

Gene Model

Click here to download ENSGMOG00000006773's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGMOG00000006773's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGMOG00000006773	sf3b1	100	93.531	ENSG00000115524	SF3B1	100	93.531	Homo_sapiens
ENSGMOG00000006773	sf3b1	100	96.434	ENSAPOG00000011894	sf3b1	100	96.434	Acanthochromis_polyacanthus
ENSGMOG00000006773	sf3b1	99	93.415	ENSAMEG00000013809	SF3B1	99	93.415	Ailuropoda_melanoleuca
ENSGMOG00000006773	sf3b1	100	95.506	ENSACIG00000020910	sf3b1	97	95.506	Amphilophus_citrinellus
ENSGMOG00000006773	sf3b1	100	96.434	ENSAOCG00000004478	sf3b1	100	96.434	Amphiprion_ocellaris
ENSGMOG00000006773	sf3b1	100	96.434	ENSAPEG00000012937	sf3b1	100	96.434	Amphiprion_percula
ENSGMOG00000006773	sf3b1	100	96.735	ENSATEG00000020435	sf3b1	100	96.735	Anabas_testudineus
ENSGMOG00000006773	sf3b1	99	93.477	ENSAPLG00000003993	SF3B1	99	93.477	Anas_platyrhynchos
ENSGMOG00000006773	sf3b1	100	93.526	ENSACAG00000009612	SF3B1	100	93.526	Anolis_carolinensis
ENSGMOG00000006773	sf3b1	100	93.531	ENSANAG00000021577	SF3B1	100	94.597	Aotus_nancymaae
ENSGMOG00000006773	sf3b1	100	94.989	ENSACLG00000023470	sf3b1	100	94.989	Astatotilapia_calliptera
ENSGMOG00000006773	sf3b1	100	95.982	ENSAMXG00000002219	sf3b1	100	95.679	Astyanax_mexicanus
ENSGMOG00000006773	sf3b1	100	93.531	ENSBTAG00000008915	SF3B1	100	93.531	Bos_taurus
ENSGMOG00000006773	sf3b1	99	64.413	WBGene00011605	sftb-1	99	64.238	Caenorhabditis_elegans
ENSGMOG00000006773	sf3b1	100	93.531	ENSCJAG00000003902	SF3B1	100	93.531	Callithrix_jacchus
ENSGMOG00000006773	sf3b1	100	93.531	ENSCAFG00000010826	SF3B1	100	93.531	Canis_familiaris
ENSGMOG00000006773	sf3b1	100	93.531	ENSCAFG00020004750	SF3B1	100	93.531	Canis_lupus_dingo
ENSGMOG00000006773	sf3b1	100	93.531	ENSCHIG00000015226	SF3B1	100	93.531	Capra_hircus
ENSGMOG00000006773	sf3b1	100	93.455	ENSTSYG00000009214	SF3B1	100	93.455	Carlito_syrichta
ENSGMOG00000006773	sf3b1	99	93.359	ENSCAPG00000006547	SF3B1	99	93.359	Cavia_aperea
ENSGMOG00000006773	sf3b1	99	93.482	ENSCPOG00000009353	SF3B1	100	93.482	Cavia_porcellus
ENSGMOG00000006773	sf3b1	100	93.531	ENSCCAG00000020506	SF3B1	100	93.531	Cebus_capucinus
ENSGMOG00000006773	sf3b1	100	93.531	ENSCATG00000035735	SF3B1	100	93.531	Cercocebus_atys
ENSGMOG00000006773	sf3b1	99	93.487	ENSCLAG00000014767	SF3B1	99	93.487	Chinchilla_lanigera
ENSGMOG00000006773	sf3b1	100	93.531	ENSCSAG00000011505	SF3B1	100	93.531	Chlorocebus_sabaeus
ENSGMOG00000006773	sf3b1	76	92.588	ENSCHOG00000009860	SF3B1	76	92.588	Choloepus_hoffmanni
ENSGMOG00000006773	sf3b1	100	93.750	ENSCPBG00000021902	SF3B1	99	94.937	Chrysemys_picta_bellii
ENSGMOG00000006773	sf3b1	68	77.790	ENSCING00000002558	-	99	78.256	Ciona_intestinalis
ENSGMOG00000006773	sf3b1	99	80.120	ENSCSAVG00000002559	-	99	79.729	Ciona_savignyi
ENSGMOG00000006773	sf3b1	100	93.531	ENSCANG00000029415	SF3B1	100	93.531	Colobus_angolensis_palliatus
ENSGMOG00000006773	sf3b1	100	93.531	ENSCGRG00001016990	Sf3b1	100	93.531	Cricetulus_griseus_chok1gshd
ENSGMOG00000006773	sf3b1	100	93.531	ENSCGRG00000005301	Sf3b1	100	93.531	Cricetulus_griseus_crigri
ENSGMOG00000006773	sf3b1	100	92.308	ENSCSEG00000003860	sf3b1	100	92.003	Cynoglossus_semilaevis
ENSGMOG00000006773	sf3b1	96	95.893	ENSCVAG00000003680	sf3b1	99	95.498	Cyprinodon_variegatus
ENSGMOG00000006773	sf3b1	100	95.144	ENSDARG00000056138	sf3b1	100	94.765	Danio_rerio
ENSGMOG00000006773	sf3b1	100	93.460	ENSDNOG00000011754	SF3B1	100	93.460	Dasypus_novemcinctus
ENSGMOG00000006773	sf3b1	99	91.341	ENSDORG00000002399	Sf3b1	100	91.264	Dipodomys_ordii
ENSGMOG00000006773	sf3b1	100	75.642	FBgn0031266	Sf3b1	100	75.642	Drosophila_melanogaster
ENSGMOG00000006773	sf3b1	83	92.463	ENSETEG00000009188	SF3B1	100	92.463	Echinops_telfairi
ENSGMOG00000006773	sf3b1	99	85.856	ENSEBUG00000004325	sf3b1	100	88.668	Eptatretus_burgeri
ENSGMOG00000006773	sf3b1	100	93.531	ENSEASG00005020159	SF3B1	98	93.531	Equus_asinus_asinus
ENSGMOG00000006773	sf3b1	100	93.531	ENSECAG00000021657	SF3B1	98	93.531	Equus_caballus
ENSGMOG00000006773	sf3b1	87	100.000	ENSEEUG00000000836	SF3B1	81	100.000	Erinaceus_europaeus
ENSGMOG00000006773	sf3b1	100	96.453	ENSELUG00000005977	sf3b1	98	96.453	Esox_lucius
ENSGMOG00000006773	sf3b1	100	93.531	ENSFCAG00000005038	SF3B1	100	93.531	Felis_catus
ENSGMOG00000006773	sf3b1	99	93.400	ENSFALG00000004281	SF3B1	99	93.400	Ficedula_albicollis
ENSGMOG00000006773	sf3b1	100	93.531	ENSFDAG00000017510	SF3B1	100	93.531	Fukomys_damarensis
ENSGMOG00000006773	sf3b1	100	95.144	ENSFHEG00000014333	sf3b1	100	94.765	Fundulus_heteroclitus
ENSGMOG00000006773	sf3b1	100	93.521	ENSGALG00000008038	SF3B1	100	93.521	Gallus_gallus
ENSGMOG00000006773	sf3b1	100	94.368	ENSGAFG00000000704	sf3b1	100	95.378	Gambusia_affinis
ENSGMOG00000006773	sf3b1	100	97.108	ENSGACG00000008839	sf3b1	100	97.108	Gasterosteus_aculeatus
ENSGMOG00000006773	sf3b1	100	93.111	ENSGAGG00000017478	SF3B1	100	93.111	Gopherus_agassizii
ENSGMOG00000006773	sf3b1	99	88.497	ENSGGOG00000009264	SF3B1	99	88.123	Gorilla_gorilla
ENSGMOG00000006773	sf3b1	99	95.057	ENSHBUG00000007705	sf3b1	99	95.057	Haplochromis_burtoni
ENSGMOG00000006773	sf3b1	99	93.487	ENSHGLG00000008285	-	99	93.487	Heterocephalus_glaber_female
ENSGMOG00000006773	sf3b1	99	91.494	ENSHGLG00100005535	-	99	91.494	Heterocephalus_glaber_male
ENSGMOG00000006773	sf3b1	100	95.623	ENSHCOG00000016775	sf3b1	100	95.623	Hippocampus_comes
ENSGMOG00000006773	sf3b1	100	95.903	ENSIPUG00000013171	sf3b1	100	95.751	Ictalurus_punctatus
ENSGMOG00000006773	sf3b1	100	93.531	ENSSTOG00000011034	SF3B1	100	93.531	Ictidomys_tridecemlineatus
ENSGMOG00000006773	sf3b1	99	93.462	ENSJJAG00000010903	Sf3b1	99	93.462	Jaculus_jaculus
ENSGMOG00000006773	sf3b1	100	95.534	ENSKMAG00000004009	sf3b1	100	95.079	Kryptolebias_marmoratus
ENSGMOG00000006773	sf3b1	100	96.801	ENSLBEG00000022208	sf3b1	100	96.801	Labrus_bergylta
ENSGMOG00000006773	sf3b1	99	90.404	ENSLACG00000014832	SF3B1	99	90.099	Latimeria_chalumnae
ENSGMOG00000006773	sf3b1	100	95.296	ENSLOCG00000003899	sf3b1	100	94.917	Lepisosteus_oculatus
ENSGMOG00000006773	sf3b1	100	93.531	ENSLAFG00000001956	SF3B1	100	93.531	Loxodonta_africana
ENSGMOG00000006773	sf3b1	99	93.487	ENSMMUG00000022430	SF3B1	99	93.487	Macaca_mulatta
ENSGMOG00000006773	sf3b1	100	93.531	ENSMNEG00000042333	SF3B1	100	94.597	Macaca_nemestrina
ENSGMOG00000006773	sf3b1	94	88.691	ENSMLEG00000026141	SF3B1	98	88.880	Mandrillus_leucophaeus
ENSGMOG00000006773	sf3b1	100	96.583	ENSMAMG00000010241	sf3b1	100	96.583	Mastacembelus_armatus
ENSGMOG00000006773	sf3b1	100	94.989	ENSMZEG00005021254	sf3b1	100	94.989	Maylandia_zebra
ENSGMOG00000006773	sf3b1	99	92.863	ENSMGAG00000007017	SF3B1	99	92.863	Meleagris_gallopavo
ENSGMOG00000006773	sf3b1	99	89.272	ENSMAUG00000009071	Sf3b1	99	89.272	Mesocricetus_auratus
ENSGMOG00000006773	sf3b1	100	93.607	ENSMICG00000013879	SF3B1	100	93.607	Microcebus_murinus
ENSGMOG00000006773	sf3b1	99	89.051	ENSMOCG00000000455	Sf3b1	99	89.051	Microtus_ochrogaster
ENSGMOG00000006773	sf3b1	84	96.539	ENSMMOG00000000475	sf3b1	100	96.539	Mola_mola
ENSGMOG00000006773	sf3b1	100	93.069	ENSMODG00000012275	SF3B1	100	93.069	Monodelphis_domestica
ENSGMOG00000006773	sf3b1	100	96.507	ENSMALG00000017211	sf3b1	100	96.507	Monopterus_albus
ENSGMOG00000006773	sf3b1	100	93.531	MGP_CAROLIEiJ_G0014141	Sf3b1	100	93.531	Mus_caroli
ENSGMOG00000006773	sf3b1	100	93.531	ENSMUSG00000025982	Sf3b1	100	93.531	Mus_musculus
ENSGMOG00000006773	sf3b1	100	93.531	MGP_SPRETEiJ_G0014947	Sf3b1	100	93.531	Mus_spretus
ENSGMOG00000006773	sf3b1	100	93.531	ENSMPUG00000007799	SF3B1	100	93.531	Mustela_putorius_furo
ENSGMOG00000006773	sf3b1	100	92.390	ENSMLUG00000000840	SF3B1	100	92.390	Myotis_lucifugus
ENSGMOG00000006773	sf3b1	99	93.206	ENSNGAG00000021884	-	100	93.206	Nannospalax_galili
ENSGMOG00000006773	sf3b1	100	91.172	ENSNBRG00000015816	sf3b1	100	91.172	Neolamprologus_brichardi
ENSGMOG00000006773	sf3b1	100	93.531	ENSNLEG00000006861	SF3B1	100	93.531	Nomascus_leucogenys
ENSGMOG00000006773	sf3b1	69	99.717	ENSMEUG00000015848	-	66	99.717	Notamacropus_eugenii
ENSGMOG00000006773	sf3b1	100	80.864	ENSOPRG00000008596	SF3B1	100	80.938	Ochotona_princeps
ENSGMOG00000006773	sf3b1	100	93.531	ENSODEG00000011153	-	100	93.531	Octodon_degus
ENSGMOG00000006773	sf3b1	100	94.989	ENSONIG00000013758	sf3b1	100	94.989	Oreochromis_niloticus
ENSGMOG00000006773	sf3b1	83	95.941	ENSOCUG00000012722	-	96	95.941	Oryctolagus_cuniculus
ENSGMOG00000006773	sf3b1	100	95.140	ENSORLG00000020219	sf3b1	100	94.837	Oryzias_latipes
ENSGMOG00000006773	sf3b1	100	95.140	ENSORLG00020001746	sf3b1	100	94.837	Oryzias_latipes_hni
ENSGMOG00000006773	sf3b1	64	93.230	ENSORLG00015001759	sf3b1	98	93.230	Oryzias_latipes_hsok
ENSGMOG00000006773	sf3b1	100	95.296	ENSOMEG00000019231	sf3b1	100	94.917	Oryzias_melastigma
ENSGMOG00000006773	sf3b1	100	93.531	ENSOARG00000015374	SF3B1	100	93.531	Ovis_aries
ENSGMOG00000006773	sf3b1	100	93.531	ENSPPAG00000035007	SF3B1	100	93.531	Pan_paniscus
ENSGMOG00000006773	sf3b1	100	93.531	ENSPPRG00000009090	SF3B1	100	93.531	Panthera_pardus
ENSGMOG00000006773	sf3b1	100	93.531	ENSPTIG00000021557	SF3B1	100	93.531	Panthera_tigris_altaica
ENSGMOG00000006773	sf3b1	99	86.162	ENSPTRG00000012771	SF3B1	99	86.162	Pan_troglodytes
ENSGMOG00000006773	sf3b1	100	93.531	ENSPANG00000013417	SF3B1	100	93.531	Papio_anubis
ENSGMOG00000006773	sf3b1	100	95.593	ENSPKIG00000000784	sf3b1	100	95.289	Paramormyrops_kingsleyae
ENSGMOG00000006773	sf3b1	99	92.550	ENSPSIG00000017222	SF3B1	98	92.396	Pelodiscus_sinensis
ENSGMOG00000006773	sf3b1	91	96.134	ENSPMGG00000004330	sf3b1	99	96.134	Periophthalmus_magnuspinnatus
ENSGMOG00000006773	sf3b1	99	93.487	ENSPEMG00000010699	Sf3b1	100	93.487	Peromyscus_maniculatus_bairdii
ENSGMOG00000006773	sf3b1	100	89.538	ENSPMAG00000001311	sf3b1	100	89.462	Petromyzon_marinus
ENSGMOG00000006773	sf3b1	100	93.069	ENSPCIG00000010642	SF3B1	100	93.069	Phascolarctos_cinereus
ENSGMOG00000006773	sf3b1	100	95.830	ENSPFOG00000000073	sf3b1	100	95.451	Poecilia_formosa
ENSGMOG00000006773	sf3b1	100	95.903	ENSPLAG00000002293	sf3b1	100	95.524	Poecilia_latipinna
ENSGMOG00000006773	sf3b1	100	95.903	ENSPMEG00000000446	sf3b1	98	95.524	Poecilia_mexicana
ENSGMOG00000006773	sf3b1	100	95.979	ENSPREG00000019652	sf3b1	100	95.599	Poecilia_reticulata
ENSGMOG00000006773	sf3b1	87	92.576	ENSPPYG00000013044	SF3B1	100	92.576	Pongo_abelii
ENSGMOG00000006773	sf3b1	100	93.379	ENSPCAG00000009292	SF3B1	100	93.379	Procavia_capensis
ENSGMOG00000006773	sf3b1	100	93.607	ENSPCOG00000024074	SF3B1	100	93.607	Propithecus_coquereli
ENSGMOG00000006773	sf3b1	100	93.531	ENSPVAG00000008302	SF3B1	100	93.531	Pteropus_vampyrus
ENSGMOG00000006773	sf3b1	100	94.913	ENSPNYG00000014939	sf3b1	100	94.913	Pundamilia_nyererei
ENSGMOG00000006773	sf3b1	100	95.754	ENSPNAG00000008288	sf3b1	100	95.603	Pygocentrus_nattereri
ENSGMOG00000006773	sf3b1	100	93.531	ENSRNOG00000013516	Sf3b1	100	93.531	Rattus_norvegicus
ENSGMOG00000006773	sf3b1	99	89.787	ENSRBIG00000026096	SF3B1	100	89.787	Rhinopithecus_bieti
ENSGMOG00000006773	sf3b1	100	93.531	ENSRROG00000031308	SF3B1	100	93.531	Rhinopithecus_roxellana
ENSGMOG00000006773	sf3b1	100	93.531	ENSSBOG00000020080	SF3B1	100	93.531	Saimiri_boliviensis_boliviensis
ENSGMOG00000006773	sf3b1	100	93.069	ENSSHAG00000017564	SF3B1	100	93.069	Sarcophilus_harrisii
ENSGMOG00000006773	sf3b1	100	95.372	ENSSFOG00015021535	sf3b1	100	95.372	Scleropages_formosus
ENSGMOG00000006773	sf3b1	99	96.288	ENSSMAG00000013977	sf3b1	99	96.288	Scophthalmus_maximus
ENSGMOG00000006773	sf3b1	100	96.583	ENSSDUG00000017422	sf3b1	100	96.583	Seriola_dumerili
ENSGMOG00000006773	sf3b1	100	96.507	ENSSLDG00000019495	sf3b1	100	96.507	Seriola_lalandi_dorsalis
ENSGMOG00000006773	sf3b1	75	98.415	ENSSARG00000007016	SF3B1	76	98.415	Sorex_araneus
ENSGMOG00000006773	sf3b1	100	93.445	ENSSPUG00000000410	SF3B1	100	93.445	Sphenodon_punctatus
ENSGMOG00000006773	sf3b1	100	96.431	ENSSPAG00000010451	sf3b1	99	96.431	Stegastes_partitus
ENSGMOG00000006773	sf3b1	91	93.244	ENSSSCG00000016075	SF3B1	100	94.597	Sus_scrofa
ENSGMOG00000006773	sf3b1	100	93.445	ENSTGUG00000010553	SF3B1	100	93.445	Taeniopygia_guttata
ENSGMOG00000006773	sf3b1	100	96.279	ENSTRUG00000015534	sf3b1	100	96.279	Takifugu_rubripes
ENSGMOG00000006773	sf3b1	84	97.211	ENSTBEG00000008714	SF3B1	93	97.211	Tupaia_belangeri
ENSGMOG00000006773	sf3b1	92	93.047	ENSTTRG00000003414	SF3B1	92	93.047	Tursiops_truncatus
ENSGMOG00000006773	sf3b1	94	84.013	ENSUAMG00000018506	SF3B1	99	97.368	Ursus_americanus
ENSGMOG00000006773	sf3b1	100	93.531	ENSUMAG00000020945	SF3B1	100	93.531	Ursus_maritimus
ENSGMOG00000006773	sf3b1	95	93.366	ENSVPAG00000005798	SF3B1	96	93.366	Vicugna_pacos
ENSGMOG00000006773	sf3b1	100	93.531	ENSVVUG00000025948	SF3B1	95	93.531	Vulpes_vulpes
ENSGMOG00000006773	sf3b1	100	91.787	ENSXETG00000013339	sf3b1	100	91.787	Xenopus_tropicalis
ENSGMOG00000006773	sf3b1	100	91.933	ENSXCOG00000018086	sf3b1	100	91.781	Xiphophorus_couchianus
ENSGMOG00000006773	sf3b1	100	95.979	ENSXMAG00000007369	sf3b1	100	95.696	Xiphophorus_maculatus