EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGMOG00000007179 (Gene tree)
Gene ID: -
Gene Symbol: cirbpb
Alias: cirbp|wu:fb12c11|wu:fi20g12|zgc:136559
Full Name: cold inducible RNA binding protein b
Gene Type: protein_coding
Species: Gadus_morhua
Status: putative
Strand: Plus strand
Length: 3999 bases
Position: chrGeneScaffold_1983:22560-26558
Accession: ZDB-GENE-030131-5841
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGMOP00000007659	RRM_1	PF00076.22	1.2e-22	1	1
ENSGMOP00000007649	RRM_1	PF00076.22	1.7e-22	1	1
ENSGMOP00000007655	RRM_1	PF00076.22	1.8e-22	1	1
ENSGMOP00000007657	RRM_1	PF00076.22	1.9e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGMOT00000007871	-	603	-	ENSGMOP00000007649	201 (aa)	-	UPI00023F101A
ENSGMOT00000007878	-	636	-	ENSGMOP00000007657	212 (aa)	-	UPI00023F101C
ENSGMOT00000007880	-	516	-	ENSGMOP00000007659	172 (aa)	-	UPI00023F101D
ENSGMOT00000007876	-	624	-	ENSGMOP00000007655	208 (aa)	-	UPI00023F101B

Gene Model

Click here to download ENSGMOG00000007179's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGMOG00000007179's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGMOG00000007179	cirbpb	52	40.323	ENSGMOG00000003760	elavl3	65	40.323
ENSGMOG00000007179	cirbpb	77	38.889	ENSGMOG00000014835	elavl1a	78	38.889
ENSGMOG00000007179	cirbpb	52	41.935	ENSGMOG00000006515	elavl4	65	41.935
ENSGMOG00000007179	cirbpb	51	37.500	ENSGMOG00000020353	-	86	37.079
ENSGMOG00000007179	cirbpb	67	32.500	ENSGMOG00000018657	ncbp2	55	31.868
ENSGMOG00000007179	cirbpb	52	40.323	ENSGMOG00000011182	ELAVL2	65	40.323

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGMOG00000007179	cirbpb	76	56.818	ENSAPOG00000004458	cirbpa	80	58.278	Acanthochromis_polyacanthus
ENSGMOG00000007179	cirbpb	98	53.807	ENSATEG00000014985	cirbpa	99	55.051	Anabas_testudineus
ENSGMOG00000007179	cirbpb	98	49.239	ENSACLG00000002094	-	99	50.495	Astatotilapia_calliptera
ENSGMOG00000007179	cirbpb	98	45.614	ENSCSEG00000014344	cirbpa	99	50.000	Cynoglossus_semilaevis
ENSGMOG00000007179	cirbpb	98	54.315	ENSCVAG00000004853	cirbpa	99	53.368	Cyprinodon_variegatus
ENSGMOG00000007179	cirbpb	80	46.715	ENSELUG00000004675	-	97	54.930	Esox_lucius
ENSGMOG00000007179	cirbpb	98	48.731	ENSFHEG00000002580	cirbpa	100	55.440	Fundulus_heteroclitus
ENSGMOG00000007179	cirbpb	98	51.232	ENSGAFG00000008654	cirbpa	99	56.122	Gambusia_affinis
ENSGMOG00000007179	cirbpb	97	51.000	ENSGACG00000015206	cirbpa	98	53.234	Gasterosteus_aculeatus
ENSGMOG00000007179	cirbpb	97	51.000	ENSKMAG00000005905	cirbpa	99	49.261	Kryptolebias_marmoratus
ENSGMOG00000007179	cirbpb	97	53.801	ENSLBEG00000000292	cirbpa	99	54.167	Labrus_bergylta
ENSGMOG00000007179	cirbpb	98	51.000	ENSMAMG00000010168	cirbpa	99	53.731	Mastacembelus_armatus
ENSGMOG00000007179	cirbpb	97	51.546	ENSMALG00000020092	cirbpa	99	53.886	Monopterus_albus
ENSGMOG00000007179	cirbpb	98	49.746	ENSONIG00000010169	cirbpa	98	50.746	Oreochromis_niloticus
ENSGMOG00000007179	cirbpb	98	51.269	ENSORLG00000015433	cirbpa	99	50.000	Oryzias_latipes
ENSGMOG00000007179	cirbpb	98	51.269	ENSORLG00020016909	cirbpa	99	50.000	Oryzias_latipes_hni
ENSGMOG00000007179	cirbpb	98	51.269	ENSORLG00015016636	cirbpa	99	50.000	Oryzias_latipes_hsok
ENSGMOG00000007179	cirbpb	98	54.315	ENSOMEG00000021469	cirbpa	76	50.244	Oryzias_melastigma
ENSGMOG00000007179	cirbpb	98	53.807	ENSPMGG00000017342	cirbpa	95	57.071	Periophthalmus_magnuspinnatus
ENSGMOG00000007179	cirbpb	98	49.020	ENSPFOG00000015653	cirbpa	100	58.673	Poecilia_formosa
ENSGMOG00000007179	cirbpb	98	50.246	ENSPLAG00000011125	cirbpa	100	58.673	Poecilia_latipinna
ENSGMOG00000007179	cirbpb	98	49.261	ENSPMEG00000013878	cirbpa	100	58.673	Poecilia_mexicana
ENSGMOG00000007179	cirbpb	98	52.709	ENSPREG00000018042	cirbpa	97	57.653	Poecilia_reticulata
ENSGMOG00000007179	cirbpb	98	55.502	ENSPNAG00000019997	cirbpb	98	58.738	Pygocentrus_nattereri
ENSGMOG00000007179	cirbpb	93	58.247	ENSSFOG00015005346	cirbpb	98	60.622	Scleropages_formosus
ENSGMOG00000007179	cirbpb	98	46.919	ENSSMAG00000002412	cirbpa	99	52.941	Scophthalmus_maximus
ENSGMOG00000007179	cirbpb	98	45.000	ENSSDUG00000016099	cirbpa	99	44.670	Seriola_dumerili
ENSGMOG00000007179	cirbpb	56	63.918	ENSSLDG00000011320	cirbpa	50	59.223	Seriola_lalandi_dorsalis
ENSGMOG00000007179	cirbpb	95	53.374	ENSSPAG00000023037	cirbpa	99	50.254	Stegastes_partitus
ENSGMOG00000007179	cirbpb	98	49.746	ENSTRUG00000010187	cirbpa	99	51.562	Takifugu_rubripes
ENSGMOG00000007179	cirbpb	98	50.481	ENSTNIG00000000450	cirbpa	99	53.202	Tetraodon_nigroviridis
ENSGMOG00000007179	cirbpb	98	52.217	ENSXCOG00000008262	cirbpa	92	63.014	Xiphophorus_couchianus
ENSGMOG00000007179	cirbpb	98	51.724	ENSXMAG00000019336	cirbpa	99	55.612	Xiphophorus_maculatus