EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGMOG00000007310 (Gene tree)
Gene ID: -
Gene Symbol: smg5
Alias: zgc:113841
Full Name: SMG5 nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Gadus_morhua
Status: putative
Strand: Plus strand
Length: 17253 bases
Position: chrGeneScaffold_2525:700508-717760
Accession: ZDB-GENE-050913-144
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGMOP00000007822	EST1	PF10374.9	7.1e-25	1	1
ENSGMOP00000007822	EST1_DNA_bind	PF10373.9	3.4e-39	1	1
ENSGMOP00000007822	PIN_4	PF13638.6	1.7e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGMOT00000008051	-	3378	-	ENSGMOP00000007822	1125 (aa)	-	UPI00023F180D

Gene Model

Click here to download ENSGMOG00000007310's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGMOG00000007310's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGMOG00000007310	smg5	92	76.376	ENSG00000198952	SMG5	99	60.931	Homo_sapiens
ENSGMOG00000007310	smg5	100	79.476	ENSAPOG00000019690	smg5	100	79.738	Acanthochromis_polyacanthus
ENSGMOG00000007310	smg5	100	77.285	ENSACIG00000001353	smg5	99	76.064	Amphilophus_citrinellus
ENSGMOG00000007310	smg5	100	79.581	ENSAOCG00000019483	smg5	100	78.690	Amphiprion_ocellaris
ENSGMOG00000007310	smg5	100	79.494	ENSAPEG00000022949	smg5	100	78.865	Amphiprion_percula
ENSGMOG00000007310	smg5	100	78.136	ENSATEG00000005348	smg5	100	77.778	Anabas_testudineus
ENSGMOG00000007310	smg5	98	63.139	ENSAPLG00000010263	SMG5	100	61.973	Anas_platyrhynchos
ENSGMOG00000007310	smg5	92	76.376	ENSANAG00000032899	SMG5	99	61.879	Aotus_nancymaae
ENSGMOG00000007310	smg5	100	78.378	ENSACLG00000009311	smg5	100	78.253	Astatotilapia_calliptera
ENSGMOG00000007310	smg5	100	76.279	ENSAMXG00000024616	smg5	100	75.552	Astyanax_mexicanus
ENSGMOG00000007310	smg5	93	76.364	ENSBTAG00000009435	SMG5	99	61.224	Bos_taurus
ENSGMOG00000007310	smg5	98	37.489	ENSBTAG00000021747	-	87	47.875	Bos_taurus
ENSGMOG00000007310	smg5	92	76.376	ENSCJAG00000005684	SMG5	99	61.879	Callithrix_jacchus
ENSGMOG00000007310	smg5	92	75.751	ENSCAFG00000016839	SMG5	99	60.545	Canis_familiaris
ENSGMOG00000007310	smg5	92	75.751	ENSCAFG00020006061	SMG5	99	60.545	Canis_lupus_dingo
ENSGMOG00000007310	smg5	93	76.765	ENSCHIG00000007709	SMG5	99	61.160	Capra_hircus
ENSGMOG00000007310	smg5	98	37.489	ENSCHIG00000006323	-	88	47.875	Capra_hircus
ENSGMOG00000007310	smg5	93	76.310	ENSTSYG00000004099	SMG5	99	62.145	Carlito_syrichta
ENSGMOG00000007310	smg5	90	52.475	ENSCAPG00000003631	SMG5	100	46.481	Cavia_aperea
ENSGMOG00000007310	smg5	92	75.342	ENSCPOG00000015696	SMG5	99	61.511	Cavia_porcellus
ENSGMOG00000007310	smg5	92	76.376	ENSCCAG00000027409	SMG5	99	61.302	Cebus_capucinus
ENSGMOG00000007310	smg5	92	76.606	ENSCATG00000030539	SMG5	99	61.370	Cercocebus_atys
ENSGMOG00000007310	smg5	92	75.799	ENSCLAG00000003983	SMG5	99	61.566	Chinchilla_lanigera
ENSGMOG00000007310	smg5	92	76.606	ENSCSAG00000002120	SMG5	99	61.370	Chlorocebus_sabaeus
ENSGMOG00000007310	smg5	51	75.812	ENSCHOG00000008741	-	56	75.812	Choloepus_hoffmanni
ENSGMOG00000007310	smg5	94	61.453	ENSCPBG00000025848	SMG5	100	61.754	Chrysemys_picta_bellii
ENSGMOG00000007310	smg5	74	37.198	ENSCING00000008706	-	74	38.924	Ciona_intestinalis
ENSGMOG00000007310	smg5	93	76.136	ENSCANG00000029208	SMG5	99	59.175	Colobus_angolensis_palliatus
ENSGMOG00000007310	smg5	100	77.145	ENSCSEG00000014220	smg5	100	76.594	Cynoglossus_semilaevis
ENSGMOG00000007310	smg5	100	68.533	ENSCVAG00000000529	smg5	99	67.138	Cyprinodon_variegatus
ENSGMOG00000007310	smg5	100	74.847	ENSDARG00000041481	smg5	100	75.000	Danio_rerio
ENSGMOG00000007310	smg5	74	36.543	ENSDNOG00000039862	-	89	36.790	Dasypus_novemcinctus
ENSGMOG00000007310	smg5	99	61.053	ENSDORG00000010382	Smg5	99	60.439	Dipodomys_ordii
ENSGMOG00000007310	smg5	75	83.495	ENSETEG00000010336	SMG5	81	83.495	Echinops_telfairi
ENSGMOG00000007310	smg5	66	52.258	ENSEBUG00000003739	smg5	80	51.954	Eptatretus_burgeri
ENSGMOG00000007310	smg5	66	76.712	ENSEEUG00000012690	SMG5	75	75.068	Erinaceus_europaeus
ENSGMOG00000007310	smg5	100	77.836	ENSELUG00000012585	smg5	100	77.111	Esox_lucius
ENSGMOG00000007310	smg5	92	76.498	ENSFCAG00000011783	SMG5	99	61.511	Felis_catus
ENSGMOG00000007310	smg5	61	61.905	ENSFALG00000001166	-	95	61.859	Ficedula_albicollis
ENSGMOG00000007310	smg5	98	60.870	ENSFDAG00000017388	SMG5	100	60.811	Fukomys_damarensis
ENSGMOG00000007310	smg5	85	86.667	ENSFHEG00000013939	smg5	93	86.667	Fundulus_heteroclitus
ENSGMOG00000007310	smg5	99	63.167	ENSGALG00000029918	-	99	61.661	Gallus_gallus
ENSGMOG00000007310	smg5	93	83.591	ENSGAFG00000021691	smg5	100	83.591	Gambusia_affinis
ENSGMOG00000007310	smg5	100	78.100	ENSGACG00000013142	smg5	100	78.697	Gasterosteus_aculeatus
ENSGMOG00000007310	smg5	99	63.556	ENSGAGG00000016131	SMG5	99	62.467	Gopherus_agassizii
ENSGMOG00000007310	smg5	92	76.376	ENSGGOG00000010932	SMG5	99	61.404	Gorilla_gorilla
ENSGMOG00000007310	smg5	100	78.303	ENSHBUG00000008654	smg5	100	78.759	Haplochromis_burtoni
ENSGMOG00000007310	smg5	99	60.866	ENSHGLG00000019152	SMG5	99	60.774	Heterocephalus_glaber_female
ENSGMOG00000007310	smg5	91	61.127	ENSHGLG00100015948	SMG5	99	61.025	Heterocephalus_glaber_male
ENSGMOG00000007310	smg5	86	75.214	ENSHCOG00000010229	smg5	96	76.068	Hippocampus_comes
ENSGMOG00000007310	smg5	100	74.388	ENSIPUG00000006624	Smg5	100	73.951	Ictalurus_punctatus
ENSGMOG00000007310	smg5	100	78.640	ENSKMAG00000014586	smg5	100	78.250	Kryptolebias_marmoratus
ENSGMOG00000007310	smg5	100	79.021	ENSLBEG00000002145	smg5	100	78.934	Labrus_bergylta
ENSGMOG00000007310	smg5	99	56.676	ENSLACG00000010521	SMG5	99	56.294	Latimeria_chalumnae
ENSGMOG00000007310	smg5	93	74.715	ENSLAFG00000006241	SMG5	99	60.730	Loxodonta_africana
ENSGMOG00000007310	smg5	92	76.606	ENSMFAG00000045357	SMG5	99	61.370	Macaca_fascicularis
ENSGMOG00000007310	smg5	92	76.606	ENSMMUG00000000090	SMG5	99	61.282	Macaca_mulatta
ENSGMOG00000007310	smg5	92	76.606	ENSMNEG00000044425	SMG5	99	61.282	Macaca_nemestrina
ENSGMOG00000007310	smg5	92	66.972	ENSMLEG00000041192	SMG5	99	56.780	Mandrillus_leucophaeus
ENSGMOG00000007310	smg5	100	77.145	ENSMAMG00000010683	smg5	100	77.320	Mastacembelus_armatus
ENSGMOG00000007310	smg5	100	72.937	ENSMZEG00005015815	smg5	99	72.081	Maylandia_zebra
ENSGMOG00000007310	smg5	65	69.452	ENSMZEG00005016543	smg5	100	68.733	Maylandia_zebra
ENSGMOG00000007310	smg5	92	76.905	ENSMICG00000002257	SMG5	99	61.867	Microcebus_murinus
ENSGMOG00000007310	smg5	99	60.635	ENSMOCG00000016590	Smg5	99	60.724	Microtus_ochrogaster
ENSGMOG00000007310	smg5	100	74.607	ENSMMOG00000017199	smg5	100	73.160	Mola_mola
ENSGMOG00000007310	smg5	70	33.770	ENSMODG00000004735	-	87	33.770	Monodelphis_domestica
ENSGMOG00000007310	smg5	69	35.106	ENSMODG00000004511	-	76	35.106	Monodelphis_domestica
ENSGMOG00000007310	smg5	73	32.319	ENSMODG00000010675	-	89	32.388	Monodelphis_domestica
ENSGMOG00000007310	smg5	72	33.573	ENSMODG00000004532	-	86	33.333	Monodelphis_domestica
ENSGMOG00000007310	smg5	100	76.091	ENSMALG00000010375	smg5	100	75.000	Monopterus_albus
ENSGMOG00000007310	smg5	99	61.038	MGP_CAROLIEiJ_G0025163	Smg5	100	88.827	Mus_caroli
ENSGMOG00000007310	smg5	99	61.180	ENSMUSG00000001415	Smg5	99	88.827	Mus_musculus
ENSGMOG00000007310	smg5	99	60.862	MGP_PahariEiJ_G0026606	Smg5	100	89.385	Mus_pahari
ENSGMOG00000007310	smg5	99	61.092	MGP_SPRETEiJ_G0026104	Smg5	100	88.827	Mus_spretus
ENSGMOG00000007310	smg5	87	75.538	ENSMPUG00000004546	SMG5	100	60.000	Mustela_putorius_furo
ENSGMOG00000007310	smg5	99	61.757	ENSMLUG00000008518	SMG5	99	61.681	Myotis_lucifugus
ENSGMOG00000007310	smg5	80	48.681	ENSNGAG00000012101	-	86	48.201	Nannospalax_galili
ENSGMOG00000007310	smg5	99	61.498	ENSNGAG00000020706	Smg5	99	61.259	Nannospalax_galili
ENSGMOG00000007310	smg5	97	71.324	ENSNBRG00000004332	smg5	98	69.810	Neolamprologus_brichardi
ENSGMOG00000007310	smg5	92	76.606	ENSNLEG00000012439	SMG5	99	61.224	Nomascus_leucogenys
ENSGMOG00000007310	smg5	99	61.858	ENSOPRG00000009152	SMG5	99	61.293	Ochotona_princeps
ENSGMOG00000007310	smg5	99	60.771	ENSODEG00000012237	SMG5	99	61.402	Octodon_degus
ENSGMOG00000007310	smg5	100	78.497	ENSONIG00000008632	smg5	100	78.497	Oreochromis_niloticus
ENSGMOG00000007310	smg5	91	34.012	ENSOCUG00000023338	-	79	42.444	Oryctolagus_cuniculus
ENSGMOG00000007310	smg5	90	77.295	ENSOCUG00000012886	SMG5	100	61.448	Oryctolagus_cuniculus
ENSGMOG00000007310	smg5	100	76.316	ENSORLG00000016239	smg5	100	76.687	Oryzias_latipes
ENSGMOG00000007310	smg5	100	76.754	ENSORLG00020013127	smg5	100	76.842	Oryzias_latipes_hni
ENSGMOG00000007310	smg5	100	76.754	ENSORLG00015019014	smg5	100	76.754	Oryzias_latipes_hsok
ENSGMOG00000007310	smg5	84	75.156	ENSOMEG00000021330	smg5	92	80.048	Oryzias_melastigma
ENSGMOG00000007310	smg5	92	74.769	ENSOGAG00000004966	SMG5	99	60.889	Otolemur_garnettii
ENSGMOG00000007310	smg5	93	76.765	ENSOARG00000005778	SMG5	99	60.774	Ovis_aries
ENSGMOG00000007310	smg5	99	37.688	ENSOARG00000011963	-	89	47.742	Ovis_aries
ENSGMOG00000007310	smg5	92	76.376	ENSPPAG00000011996	SMG5	99	61.702	Pan_paniscus
ENSGMOG00000007310	smg5	90	76.329	ENSPPRG00000011901	SMG5	100	61.121	Panthera_pardus
ENSGMOG00000007310	smg5	89	74.092	ENSPTIG00000007892	SMG5	96	58.851	Panthera_tigris_altaica
ENSGMOG00000007310	smg5	92	76.376	ENSPTRG00000049282	-	88	74.728	Pan_troglodytes
ENSGMOG00000007310	smg5	92	76.376	ENSPTRG00000023925	SMG5	99	61.702	Pan_troglodytes
ENSGMOG00000007310	smg5	92	76.606	ENSPANG00000011201	SMG5	99	61.370	Papio_anubis
ENSGMOG00000007310	smg5	100	75.242	ENSPKIG00000009402	smg5	100	74.626	Paramormyrops_kingsleyae
ENSGMOG00000007310	smg5	99	63.256	ENSPSIG00000015198	SMG5	100	62.206	Pelodiscus_sinensis
ENSGMOG00000007310	smg5	100	69.886	ENSPMGG00000010465	smg5	100	69.386	Periophthalmus_magnuspinnatus
ENSGMOG00000007310	smg5	99	60.827	ENSPEMG00000001819	Smg5	99	61.327	Peromyscus_maniculatus_bairdii
ENSGMOG00000007310	smg5	87	61.072	ENSPMAG00000000410	smg5	99	47.392	Petromyzon_marinus
ENSGMOG00000007310	smg5	100	76.990	ENSPFOG00000010191	smg5	100	76.404	Poecilia_formosa
ENSGMOG00000007310	smg5	100	76.930	ENSPLAG00000009332	smg5	100	76.491	Poecilia_latipinna
ENSGMOG00000007310	smg5	100	77.078	ENSPMEG00000014105	smg5	100	76.491	Poecilia_mexicana
ENSGMOG00000007310	smg5	100	77.105	ENSPREG00000017713	smg5	100	76.754	Poecilia_reticulata
ENSGMOG00000007310	smg5	92	76.376	ENSPPYG00000000723	SMG5	99	61.194	Pongo_abelii
ENSGMOG00000007310	smg5	69	81.111	ENSPCAG00000008412	SMG5	81	81.111	Procavia_capensis
ENSGMOG00000007310	smg5	93	63.514	ENSPVAG00000016748	SMG5	99	55.869	Pteropus_vampyrus
ENSGMOG00000007310	smg5	100	78.378	ENSPNYG00000013397	smg5	100	78.223	Pundamilia_nyererei
ENSGMOG00000007310	smg5	100	75.993	ENSPNAG00000028363	smg5	100	74.716	Pygocentrus_nattereri
ENSGMOG00000007310	smg5	99	60.510	ENSRNOG00000019590	Smg5	99	61.062	Rattus_norvegicus
ENSGMOG00000007310	smg5	92	76.606	ENSRBIG00000027428	SMG5	99	61.302	Rhinopithecus_bieti
ENSGMOG00000007310	smg5	92	76.606	ENSRROG00000030035	SMG5	99	61.214	Rhinopithecus_roxellana
ENSGMOG00000007310	smg5	92	76.606	ENSSBOG00000033339	SMG5	99	61.791	Saimiri_boliviensis_boliviensis
ENSGMOG00000007310	smg5	74	39.640	ENSSHAG00000009572	-	82	39.189	Sarcophilus_harrisii
ENSGMOG00000007310	smg5	52	35.024	ENSSHAG00000000935	-	82	35.266	Sarcophilus_harrisii
ENSGMOG00000007310	smg5	70	34.783	ENSSHAG00000000561	-	85	34.856	Sarcophilus_harrisii
ENSGMOG00000007310	smg5	100	74.433	ENSSFOG00015024175	smg5	100	73.776	Scleropages_formosus
ENSGMOG00000007310	smg5	100	77.778	ENSSMAG00000013059	smg5	100	77.408	Scophthalmus_maximus
ENSGMOG00000007310	smg5	100	78.428	ENSSDUG00000007122	smg5	100	78.740	Seriola_dumerili
ENSGMOG00000007310	smg5	100	77.817	ENSSLDG00000011418	smg5	100	78.478	Seriola_lalandi_dorsalis
ENSGMOG00000007310	smg5	64	70.251	ENSSARG00000012484	SMG5	94	70.251	Sorex_araneus
ENSGMOG00000007310	smg5	94	60.890	ENSSPUG00000002260	SMG5	100	60.187	Sphenodon_punctatus
ENSGMOG00000007310	smg5	100	78.727	ENSSPAG00000014266	smg5	100	79.773	Stegastes_partitus
ENSGMOG00000007310	smg5	99	48.046	ENSSSCG00000039308	-	99	47.737	Sus_scrofa
ENSGMOG00000007310	smg5	93	70.615	ENSSSCG00000006490	-	100	60.960	Sus_scrofa
ENSGMOG00000007310	smg5	99	63.313	ENSTGUG00000003748	-	99	62.289	Taeniopygia_guttata
ENSGMOG00000007310	smg5	100	75.044	ENSTRUG00000012580	smg5	100	73.890	Takifugu_rubripes
ENSGMOG00000007310	smg5	100	75.548	ENSTNIG00000010303	smg5	100	74.019	Tetraodon_nigroviridis
ENSGMOG00000007310	smg5	52	84.236	ENSTBEG00000002777	SMG5	58	84.236	Tupaia_belangeri
ENSGMOG00000007310	smg5	99	57.872	ENSTTRG00000001401	SMG5	99	57.801	Tursiops_truncatus
ENSGMOG00000007310	smg5	92	75.000	ENSUAMG00000013721	SMG5	99	60.498	Ursus_americanus
ENSGMOG00000007310	smg5	94	71.759	ENSUMAG00000018041	SMG5	95	70.814	Ursus_maritimus
ENSGMOG00000007310	smg5	85	71.782	ENSVPAG00000009446	SMG5	99	53.986	Vicugna_pacos
ENSGMOG00000007310	smg5	99	60.510	ENSVVUG00000005887	SMG5	99	60.633	Vulpes_vulpes
ENSGMOG00000007310	smg5	79	54.860	ENSXETG00000033791	SMG5	99	51.659	Xenopus_tropicalis
ENSGMOG00000007310	smg5	92	87.027	ENSXCOG00000004379	smg5	99	87.912	Xiphophorus_couchianus
ENSGMOG00000007310	smg5	100	76.316	ENSXMAG00000013499	smg5	100	76.228	Xiphophorus_maculatus