EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGMOG00000007541 (Gene tree)
Gene ID: -
Gene Symbol: upf1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Gadus_morhua
Status: putative
Strand: Plus strand
Length: 12024 bases
Position: chrGeneScaffold_2819:19941-31964
Accession: ZDB-GENE-040426-2836
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGMOP00000008081	UPF1_Zn_bind	PF09416.10	4.6e-75	1	1
ENSGMOP00000008081	ResIII	PF04851.15	1.7e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGMOT00000008312	-	3324	-	ENSGMOP00000008081	1107 (aa)	-	UPI00023F1452

Gene Model

Click here to download ENSGMOG00000007541's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGMOG00000007541's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGMOG00000007541	upf1	100	91.696	ENSG00000005007	UPF1	100	91.254	Homo_sapiens
ENSGMOG00000007541	upf1	100	95.238	ENSAPOG00000010916	-	100	95.238	Acanthochromis_polyacanthus
ENSGMOG00000007541	upf1	100	92.004	ENSAPOG00000023773	upf1	100	92.093	Acanthochromis_polyacanthus
ENSGMOG00000007541	upf1	100	92.014	ENSAMEG00000011474	UPF1	100	91.571	Ailuropoda_melanoleuca
ENSGMOG00000007541	upf1	100	91.727	ENSACIG00000019949	upf1	100	91.457	Amphilophus_citrinellus
ENSGMOG00000007541	upf1	93	94.986	ENSACIG00000010985	-	100	94.986	Amphilophus_citrinellus
ENSGMOG00000007541	upf1	100	95.238	ENSAOCG00000006352	-	100	95.238	Amphiprion_ocellaris
ENSGMOG00000007541	upf1	100	91.516	ENSAOCG00000018519	upf1	100	91.223	Amphiprion_ocellaris
ENSGMOG00000007541	upf1	100	95.148	ENSAPEG00000006292	-	100	95.148	Amphiprion_percula
ENSGMOG00000007541	upf1	100	91.516	ENSAPEG00000016344	upf1	100	91.223	Amphiprion_percula
ENSGMOG00000007541	upf1	100	90.371	ENSATEG00000017867	upf1	100	90.796	Anabas_testudineus
ENSGMOG00000007541	upf1	100	95.058	ENSATEG00000016606	-	100	94.519	Anabas_testudineus
ENSGMOG00000007541	upf1	95	94.602	ENSAPLG00000009175	UPF1	100	94.034	Anas_platyrhynchos
ENSGMOG00000007541	upf1	95	92.162	ENSANAG00000024107	UPF1	96	91.596	Aotus_nancymaae
ENSGMOG00000007541	upf1	100	94.429	ENSACLG00000022630	-	100	94.519	Astatotilapia_calliptera
ENSGMOG00000007541	upf1	100	91.817	ENSACLG00000007181	upf1	100	91.547	Astatotilapia_calliptera
ENSGMOG00000007541	upf1	100	93.447	ENSAMXG00000042187	upf1	100	93.178	Astyanax_mexicanus
ENSGMOG00000007541	upf1	100	92.028	ENSBTAG00000020922	UPF1	100	91.585	Bos_taurus
ENSGMOG00000007541	upf1	82	53.712	WBGene00004880	smg-2	83	53.712	Caenorhabditis_elegans
ENSGMOG00000007541	upf1	100	91.696	ENSCJAG00000019627	UPF1	100	91.254	Callithrix_jacchus
ENSGMOG00000007541	upf1	100	91.784	ENSCAFG00000014578	UPF1	100	91.343	Canis_familiaris
ENSGMOG00000007541	upf1	100	91.608	ENSCAFG00020012347	UPF1	100	91.166	Canis_lupus_dingo
ENSGMOG00000007541	upf1	100	91.851	ENSCHIG00000011018	UPF1	100	91.408	Capra_hircus
ENSGMOG00000007541	upf1	95	93.922	ENSTSYG00000008877	UPF1	98	93.352	Carlito_syrichta
ENSGMOG00000007541	upf1	96	93.146	ENSCAPG00000005758	UPF1	96	92.113	Cavia_aperea
ENSGMOG00000007541	upf1	100	92.992	ENSCPOG00000025463	UPF1	100	92.004	Cavia_porcellus
ENSGMOG00000007541	upf1	100	92.349	ENSCCAG00000032175	UPF1	100	91.904	Cebus_capucinus
ENSGMOG00000007541	upf1	94	94.275	ENSCATG00000040306	UPF1	97	93.702	Cercocebus_atys
ENSGMOG00000007541	upf1	95	94.112	ENSCLAG00000004037	UPF1	99	93.162	Chinchilla_lanigera
ENSGMOG00000007541	upf1	100	91.519	ENSCSAG00000005276	UPF1	100	91.078	Chlorocebus_sabaeus
ENSGMOG00000007541	upf1	100	91.741	ENSCPBG00000012513	UPF1	100	91.474	Chrysemys_picta_bellii
ENSGMOG00000007541	upf1	78	78.176	ENSCING00000021399	-	99	78.136	Ciona_intestinalis
ENSGMOG00000007541	upf1	99	71.569	ENSCSAVG00000006533	-	99	71.733	Ciona_savignyi
ENSGMOG00000007541	upf1	95	94.017	ENSCANG00000029819	UPF1	97	93.447	Colobus_angolensis_palliatus
ENSGMOG00000007541	upf1	100	91.748	ENSCGRG00001021067	Upf1	100	90.949	Cricetulus_griseus_chok1gshd
ENSGMOG00000007541	upf1	95	93.827	ENSCGRG00000013480	Upf1	98	92.877	Cricetulus_griseus_crigri
ENSGMOG00000007541	upf1	100	87.196	ENSCSEG00000017239	upf1	100	86.745	Cynoglossus_semilaevis
ENSGMOG00000007541	upf1	100	94.419	ENSCSEG00000016159	-	100	94.059	Cynoglossus_semilaevis
ENSGMOG00000007541	upf1	100	93.980	ENSCVAG00000010561	upf1	100	93.441	Cyprinodon_variegatus
ENSGMOG00000007541	upf1	100	93.088	ENSDARG00000016302	upf1	100	92.819	Danio_rerio
ENSGMOG00000007541	upf1	95	91.738	ENSDORG00000009984	Upf1	95	90.788	Dipodomys_ordii
ENSGMOG00000007541	upf1	86	70.539	FBgn0030354	Upf1	81	70.113	Drosophila_melanogaster
ENSGMOG00000007541	upf1	54	85.691	ENSEBUG00000010069	upf1	96	86.020	Eptatretus_burgeri
ENSGMOG00000007541	upf1	100	91.851	ENSEASG00005006549	UPF1	100	91.408	Equus_asinus_asinus
ENSGMOG00000007541	upf1	100	91.851	ENSECAG00000010639	UPF1	100	91.408	Equus_caballus
ENSGMOG00000007541	upf1	100	94.107	ENSELUG00000012916	-	100	94.286	Esox_lucius
ENSGMOG00000007541	upf1	100	91.689	ENSELUG00000020917	upf1	100	91.510	Esox_lucius
ENSGMOG00000007541	upf1	100	91.696	ENSFCAG00000009757	UPF1	100	91.254	Felis_catus
ENSGMOG00000007541	upf1	95	93.585	ENSFALG00000009312	UPF1	96	93.019	Ficedula_albicollis
ENSGMOG00000007541	upf1	95	94.017	ENSFDAG00000014816	UPF1	99	93.067	Fukomys_damarensis
ENSGMOG00000007541	upf1	87	95.644	ENSFHEG00000016276	-	96	95.644	Fundulus_heteroclitus
ENSGMOG00000007541	upf1	100	88.475	ENSFHEG00000006428	upf1	100	88.121	Fundulus_heteroclitus
ENSGMOG00000007541	upf1	100	91.681	ENSGALG00000003220	UPF1	100	91.416	Gallus_gallus
ENSGMOG00000007541	upf1	65	91.084	ENSGAFG00000015443	-	88	91.084	Gambusia_affinis
ENSGMOG00000007541	upf1	100	94.775	ENSGAFG00000004831	upf1	100	94.590	Gambusia_affinis
ENSGMOG00000007541	upf1	100	92.239	ENSGAGG00000022217	UPF1	100	91.971	Gopherus_agassizii
ENSGMOG00000007541	upf1	95	93.827	ENSGGOG00000002608	UPF1	99	93.257	Gorilla_gorilla
ENSGMOG00000007541	upf1	87	97.436	ENSHBUG00000008939	upf1	95	97.436	Haplochromis_burtoni
ENSGMOG00000007541	upf1	90	93.671	ENSHBUG00000014694	upf1	100	93.671	Haplochromis_burtoni
ENSGMOG00000007541	upf1	100	91.608	ENSHGLG00000010900	UPF1	100	91.254	Heterocephalus_glaber_female
ENSGMOG00000007541	upf1	95	92.213	ENSHGLG00100005904	UPF1	96	91.738	Heterocephalus_glaber_male
ENSGMOG00000007541	upf1	100	93.705	ENSHCOG00000008918	upf1	100	94.245	Hippocampus_comes
ENSGMOG00000007541	upf1	100	93.447	ENSIPUG00000005108	UPF1	100	93.178	Ictalurus_punctatus
ENSGMOG00000007541	upf1	100	92.103	ENSSTOG00000009196	UPF1	100	91.304	Ictidomys_tridecemlineatus
ENSGMOG00000007541	upf1	100	91.911	ENSJJAG00000023151	Upf1	100	91.111	Jaculus_jaculus
ENSGMOG00000007541	upf1	100	94.519	ENSKMAG00000004962	upf1	100	94.519	Kryptolebias_marmoratus
ENSGMOG00000007541	upf1	100	94.609	ENSLBEG00000027848	-	100	94.609	Labrus_bergylta
ENSGMOG00000007541	upf1	100	90.691	ENSLBEG00000014862	upf1	100	90.957	Labrus_bergylta
ENSGMOG00000007541	upf1	63	94.269	ENSLACG00000008482	UPF1	100	93.840	Latimeria_chalumnae
ENSGMOG00000007541	upf1	100	93.801	ENSLOCG00000002072	upf1	100	93.351	Lepisosteus_oculatus
ENSGMOG00000007541	upf1	100	91.504	ENSLAFG00000014963	UPF1	100	91.062	Loxodonta_africana
ENSGMOG00000007541	upf1	100	92.349	ENSMFAG00000037748	UPF1	100	91.904	Macaca_fascicularis
ENSGMOG00000007541	upf1	100	92.103	ENSMMUG00000023286	UPF1	100	91.659	Macaca_mulatta
ENSGMOG00000007541	upf1	100	92.349	ENSMNEG00000000046	UPF1	100	91.904	Macaca_nemestrina
ENSGMOG00000007541	upf1	95	94.017	ENSMLEG00000028404	UPF1	99	93.447	Mandrillus_leucophaeus
ENSGMOG00000007541	upf1	100	90.619	ENSMAMG00000006229	upf1	100	90.885	Mastacembelus_armatus
ENSGMOG00000007541	upf1	100	94.519	ENSMAMG00000006231	-	100	94.519	Mastacembelus_armatus
ENSGMOG00000007541	upf1	100	94.429	ENSMZEG00005016386	-	100	94.519	Maylandia_zebra
ENSGMOG00000007541	upf1	100	90.780	ENSMZEG00005003489	upf1	100	90.844	Maylandia_zebra
ENSGMOG00000007541	upf1	95	93.833	ENSMGAG00000004745	UPF1	100	93.264	Meleagris_gallopavo
ENSGMOG00000007541	upf1	95	93.827	ENSMAUG00000011398	Upf1	95	92.877	Mesocricetus_auratus
ENSGMOG00000007541	upf1	100	91.608	ENSMICG00000001659	UPF1	100	91.166	Microcebus_murinus
ENSGMOG00000007541	upf1	100	91.925	ENSMOCG00000005699	Upf1	100	91.216	Microtus_ochrogaster
ENSGMOG00000007541	upf1	95	92.337	ENSMMOG00000007537	-	99	92.337	Mola_mola
ENSGMOG00000007541	upf1	100	91.697	ENSMMOG00000007881	upf1	100	91.982	Mola_mola
ENSGMOG00000007541	upf1	100	91.454	ENSMODG00000003689	UPF1	100	91.101	Monodelphis_domestica
ENSGMOG00000007541	upf1	100	92.748	ENSMALG00000018100	-	100	92.844	Monopterus_albus
ENSGMOG00000007541	upf1	100	91.606	ENSMALG00000000144	upf1	100	91.441	Monopterus_albus
ENSGMOG00000007541	upf1	100	91.837	MGP_CAROLIEiJ_G0031142	Upf1	100	91.038	Mus_caroli
ENSGMOG00000007541	upf1	100	91.837	ENSMUSG00000058301	Upf1	100	91.038	Mus_musculus
ENSGMOG00000007541	upf1	100	91.837	MGP_PahariEiJ_G0021607	Upf1	100	91.038	Mus_pahari
ENSGMOG00000007541	upf1	100	91.837	MGP_SPRETEiJ_G0032260	Upf1	100	91.038	Mus_spretus
ENSGMOG00000007541	upf1	100	91.608	ENSMPUG00000015516	UPF1	100	91.166	Mustela_putorius_furo
ENSGMOG00000007541	upf1	99	91.489	ENSMLUG00000012122	UPF1	99	91.046	Myotis_lucifugus
ENSGMOG00000007541	upf1	100	91.504	ENSNGAG00000024107	Upf1	100	90.708	Nannospalax_galili
ENSGMOG00000007541	upf1	100	92.126	ENSNBRG00000022069	-	100	93.378	Neolamprologus_brichardi
ENSGMOG00000007541	upf1	100	90.108	ENSNBRG00000000670	upf1	100	89.838	Neolamprologus_brichardi
ENSGMOG00000007541	upf1	95	88.224	ENSNLEG00000006062	UPF1	99	87.654	Nomascus_leucogenys
ENSGMOG00000007541	upf1	83	88.454	ENSMEUG00000014146	-	83	87.280	Notamacropus_eugenii
ENSGMOG00000007541	upf1	95	87.643	ENSOPRG00000014018	UPF1	99	85.446	Ochotona_princeps
ENSGMOG00000007541	upf1	100	92.986	ENSODEG00000012426	UPF1	100	92.086	Octodon_degus
ENSGMOG00000007541	upf1	100	94.519	ENSONIG00000012729	-	100	94.519	Oreochromis_niloticus
ENSGMOG00000007541	upf1	100	90.957	ENSONIG00000010452	upf1	100	91.022	Oreochromis_niloticus
ENSGMOG00000007541	upf1	100	91.674	ENSOANG00000004568	UPF1	100	91.408	Ornithorhynchus_anatinus
ENSGMOG00000007541	upf1	100	94.070	ENSORLG00000008453	upf1	100	93.801	Oryzias_latipes
ENSGMOG00000007541	upf1	100	93.986	ENSORLG00020014758	upf1	100	93.716	Oryzias_latipes_hni
ENSGMOG00000007541	upf1	100	93.986	ENSORLG00015010165	upf1	100	93.716	Oryzias_latipes_hsok
ENSGMOG00000007541	upf1	100	94.429	ENSOMEG00000003665	upf1	100	94.160	Oryzias_melastigma
ENSGMOG00000007541	upf1	100	91.608	ENSOGAG00000012866	UPF1	100	91.166	Otolemur_garnettii
ENSGMOG00000007541	upf1	96	90.901	ENSOARG00000010739	UPF1	100	90.349	Ovis_aries
ENSGMOG00000007541	upf1	95	94.017	ENSPPAG00000043884	UPF1	96	93.447	Pan_paniscus
ENSGMOG00000007541	upf1	100	91.696	ENSPPRG00000023470	UPF1	100	91.254	Panthera_pardus
ENSGMOG00000007541	upf1	95	91.659	ENSPTIG00000010159	UPF1	99	91.090	Panthera_tigris_altaica
ENSGMOG00000007541	upf1	100	92.349	ENSPTRG00000010721	UPF1	100	91.904	Pan_troglodytes
ENSGMOG00000007541	upf1	100	92.349	ENSPANG00000008847	UPF1	100	91.904	Papio_anubis
ENSGMOG00000007541	upf1	92	93.398	ENSPKIG00000006069	upf1	95	95.300	Paramormyrops_kingsleyae
ENSGMOG00000007541	upf1	69	93.473	ENSPSIG00000009491	UPF1	100	92.689	Pelodiscus_sinensis
ENSGMOG00000007541	upf1	100	89.705	ENSPMGG00000017327	upf1	100	89.812	Periophthalmus_magnuspinnatus
ENSGMOG00000007541	upf1	100	91.925	ENSPEMG00000001085	Upf1	100	91.127	Peromyscus_maniculatus_bairdii
ENSGMOG00000007541	upf1	100	87.623	ENSPMAG00000001206	upf1	100	87.534	Petromyzon_marinus
ENSGMOG00000007541	upf1	100	91.777	ENSPCIG00000006156	UPF1	100	91.335	Phascolarctos_cinereus
ENSGMOG00000007541	upf1	100	90.116	ENSPLAG00000018155	-	100	89.403	Poecilia_latipinna
ENSGMOG00000007541	upf1	100	94.865	ENSPLAG00000016232	-	100	94.590	Poecilia_latipinna
ENSGMOG00000007541	upf1	100	90.754	ENSPMEG00000011443	-	100	90.541	Poecilia_mexicana
ENSGMOG00000007541	upf1	100	94.955	ENSPMEG00000016319	-	100	94.680	Poecilia_mexicana
ENSGMOG00000007541	upf1	100	90.667	ENSPREG00000009940	upf1	100	90.044	Poecilia_reticulata
ENSGMOG00000007541	upf1	100	94.775	ENSPREG00000011247	-	100	94.500	Poecilia_reticulata
ENSGMOG00000007541	upf1	100	86.991	ENSPPYG00000009752	UPF1	100	86.637	Pongo_abelii
ENSGMOG00000007541	upf1	75	98.316	ENSPCAG00000012962	UPF1	76	98.316	Procavia_capensis
ENSGMOG00000007541	upf1	100	92.274	ENSPCOG00000023813	UPF1	100	91.829	Propithecus_coquereli
ENSGMOG00000007541	upf1	69	97.436	ENSPVAG00000003183	UPF1	69	97.436	Pteropus_vampyrus
ENSGMOG00000007541	upf1	100	94.429	ENSPNYG00000016731	-	100	94.519	Pundamilia_nyererei
ENSGMOG00000007541	upf1	100	90.780	ENSPNYG00000003694	upf1	100	90.844	Pundamilia_nyererei
ENSGMOG00000007541	upf1	100	93.357	ENSPNAG00000025614	upf1	100	93.088	Pygocentrus_nattereri
ENSGMOG00000007541	upf1	100	91.837	ENSRNOG00000020134	Upf1	100	91.038	Rattus_norvegicus
ENSGMOG00000007541	upf1	95	91.643	ENSRBIG00000013894	UPF1	98	92.765	Rhinopithecus_bieti
ENSGMOG00000007541	upf1	95	94.017	ENSRROG00000040935	UPF1	98	92.765	Rhinopithecus_roxellana
ENSGMOG00000007541	upf1	73	56.667	YMR080C	NAM7	82	56.667	Saccharomyces_cerevisiae
ENSGMOG00000007541	upf1	94	94.275	ENSSBOG00000023632	UPF1	96	93.702	Saimiri_boliviensis_boliviensis
ENSGMOG00000007541	upf1	95	93.934	ENSSHAG00000010499	UPF1	100	93.365	Sarcophilus_harrisii
ENSGMOG00000007541	upf1	100	93.801	ENSSFOG00015021095	upf1	100	94.070	Scleropages_formosus
ENSGMOG00000007541	upf1	100	95.328	ENSSMAG00000021018	-	100	95.328	Scophthalmus_maximus
ENSGMOG00000007541	upf1	100	89.539	ENSSMAG00000005055	upf1	100	90.071	Scophthalmus_maximus
ENSGMOG00000007541	upf1	100	90.531	ENSSDUG00000013320	upf1	100	90.973	Seriola_dumerili
ENSGMOG00000007541	upf1	100	95.328	ENSSDUG00000009629	-	100	95.328	Seriola_dumerili
ENSGMOG00000007541	upf1	100	91.339	ENSSLDG00000020868	upf1	100	91.339	Seriola_lalandi_dorsalis
ENSGMOG00000007541	upf1	100	95.328	ENSSLDG00000006878	-	100	95.328	Seriola_lalandi_dorsalis
ENSGMOG00000007541	upf1	100	92.075	ENSSPUG00000010538	UPF1	100	91.808	Sphenodon_punctatus
ENSGMOG00000007541	upf1	100	94.424	ENSSPAG00000011521	-	100	94.424	Stegastes_partitus
ENSGMOG00000007541	upf1	100	89.829	ENSSPAG00000000003	upf1	100	89.829	Stegastes_partitus
ENSGMOG00000007541	upf1	100	91.940	ENSSSCG00000039301	UPF1	99	93.175	Sus_scrofa
ENSGMOG00000007541	upf1	83	87.553	ENSTGUG00000001057	UPF1	100	92.319	Taeniopygia_guttata
ENSGMOG00000007541	upf1	100	94.065	ENSTRUG00000005131	-	100	93.609	Takifugu_rubripes
ENSGMOG00000007541	upf1	100	91.787	ENSTRUG00000000150	upf1	100	91.712	Takifugu_rubripes
ENSGMOG00000007541	upf1	100	88.220	ENSTTRG00000011544	UPF1	100	87.688	Tursiops_truncatus
ENSGMOG00000007541	upf1	100	91.519	ENSUAMG00000007093	UPF1	100	91.078	Ursus_americanus
ENSGMOG00000007541	upf1	95	93.934	ENSUMAG00000006652	UPF1	99	93.449	Ursus_maritimus
ENSGMOG00000007541	upf1	100	91.608	ENSVVUG00000007797	UPF1	100	91.166	Vulpes_vulpes
ENSGMOG00000007541	upf1	100	79.577	ENSXETG00000013602	upf1	100	79.137	Xenopus_tropicalis
ENSGMOG00000007541	upf1	97	90.756	ENSXCOG00000015275	-	96	90.663	Xiphophorus_couchianus
ENSGMOG00000007541	upf1	94	94.909	ENSXCOG00000005764	-	100	94.712	Xiphophorus_couchianus
ENSGMOG00000007541	upf1	100	94.775	ENSXMAG00000002540	-	100	94.590	Xiphophorus_maculatus
ENSGMOG00000007541	upf1	100	90.975	ENSXMAG00000001703	-	100	90.884	Xiphophorus_maculatus