EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGMOG00000007639 (Gene tree)
Gene ID: -
Gene Symbol: ptcd1
Alias: wu:fi36d06
Full Name: pentatricopeptide repeat domain 1
Gene Type: protein_coding
Species: Gadus_morhua
Status: putative
Strand: Plus strand
Length: 2776 bases
Position: chrGeneScaffold_4029:81303-84078
Accession: ZDB-GENE-030131-6146
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGMOP00000008181	PPR	PF01535.20	1.6e-14	1	2
ENSGMOP00000008181	PPR	PF01535.20	1.6e-14	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGMOT00000008415	-	1851	-	ENSGMOP00000008181	617 (aa)	-	UPI00023F158A

Gene Model

Click here to download ENSGMOG00000007639's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGMOG00000007639's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGMOG00000007639	ptcd1	91	48.700	ENSG00000248919	ATP5MF-PTCD1	77	48.700	Homo_sapiens
ENSGMOG00000007639	ptcd1	91	48.700	ENSG00000106246	PTCD1	82	48.700	Homo_sapiens
ENSGMOG00000007639	ptcd1	87	60.512	ENSAPOG00000010679	ptcd1	84	60.512	Acanthochromis_polyacanthus
ENSGMOG00000007639	ptcd1	91	48.270	ENSAMEG00000006224	-	76	48.270	Ailuropoda_melanoleuca
ENSGMOG00000007639	ptcd1	92	64.249	ENSACIG00000017861	ptcd1	84	64.249	Amphilophus_citrinellus
ENSGMOG00000007639	ptcd1	87	61.922	ENSAOCG00000022617	ptcd1	81	61.922	Amphiprion_ocellaris
ENSGMOG00000007639	ptcd1	100	59.807	ENSAOCG00000020741	-	87	59.807	Amphiprion_ocellaris
ENSGMOG00000007639	ptcd1	100	59.646	ENSAPEG00000022632	ptcd1	87	59.646	Amphiprion_percula
ENSGMOG00000007639	ptcd1	97	65.442	ENSATEG00000007016	ptcd1	87	64.309	Anabas_testudineus
ENSGMOG00000007639	ptcd1	91	47.766	ENSAPLG00000006862	-	90	47.766	Anas_platyrhynchos
ENSGMOG00000007639	ptcd1	94	45.514	ENSACAG00000012871	-	80	45.514	Anolis_carolinensis
ENSGMOG00000007639	ptcd1	91	48.014	ENSANAG00000035790	-	85	48.014	Aotus_nancymaae
ENSGMOG00000007639	ptcd1	99	62.998	ENSACLG00000002824	ptcd1	87	62.998	Astatotilapia_calliptera
ENSGMOG00000007639	ptcd1	91	51.747	ENSAMXG00000037292	ptcd1	84	52.145	Astyanax_mexicanus
ENSGMOG00000007639	ptcd1	91	47.150	ENSBTAG00000020440	-	72	47.759	Bos_taurus
ENSGMOG00000007639	ptcd1	91	47.924	ENSCJAG00000015815	-	83	47.924	Callithrix_jacchus
ENSGMOG00000007639	ptcd1	91	48.877	ENSCAFG00000015055	-	77	48.877	Canis_familiaris
ENSGMOG00000007639	ptcd1	91	48.877	ENSCAFG00020014480	-	77	48.877	Canis_lupus_dingo
ENSGMOG00000007639	ptcd1	91	48.542	ENSCHIG00000027000	-	82	48.801	Capra_hircus
ENSGMOG00000007639	ptcd1	91	47.849	ENSTSYG00000029495	-	82	48.021	Carlito_syrichta
ENSGMOG00000007639	ptcd1	95	45.902	ENSCAPG00000014660	-	92	45.902	Cavia_aperea
ENSGMOG00000007639	ptcd1	95	46.393	ENSCPOG00000001780	-	86	46.393	Cavia_porcellus
ENSGMOG00000007639	ptcd1	95	46.787	ENSCCAG00000034025	-	86	46.787	Cebus_capucinus
ENSGMOG00000007639	ptcd1	96	47.611	ENSCATG00000040859	-	86	47.611	Cercocebus_atys
ENSGMOG00000007639	ptcd1	91	47.232	ENSCLAG00000006354	-	86	46.129	Chinchilla_lanigera
ENSGMOG00000007639	ptcd1	87	47.541	ENSCSAG00000017794	-	81	47.541	Chlorocebus_sabaeus
ENSGMOG00000007639	ptcd1	91	45.738	ENSCPBG00000020866	-	81	45.738	Chrysemys_picta_bellii
ENSGMOG00000007639	ptcd1	91	48.438	ENSCANG00000023441	-	82	48.438	Colobus_angolensis_palliatus
ENSGMOG00000007639	ptcd1	93	46.747	ENSCGRG00001023686	Ptcd1	83	46.404	Cricetulus_griseus_chok1gshd
ENSGMOG00000007639	ptcd1	93	46.747	ENSCGRG00000015031	Ptcd1	83	46.404	Cricetulus_griseus_crigri
ENSGMOG00000007639	ptcd1	93	58.733	ENSCSEG00000002378	ptcd1	81	59.075	Cynoglossus_semilaevis
ENSGMOG00000007639	ptcd1	93	63.419	ENSCVAG00000003621	ptcd1	87	63.419	Cyprinodon_variegatus
ENSGMOG00000007639	ptcd1	99	62.420	ENSCVAG00000015826	ptcd1	88	62.420	Cyprinodon_variegatus
ENSGMOG00000007639	ptcd1	91	50.515	ENSDARG00000076176	ptcd1	83	50.515	Danio_rerio
ENSGMOG00000007639	ptcd1	91	47.586	ENSDNOG00000009957	-	82	47.414	Dasypus_novemcinctus
ENSGMOG00000007639	ptcd1	91	47.432	ENSDORG00000000740	Ptcd1	84	47.521	Dipodomys_ordii
ENSGMOG00000007639	ptcd1	87	39.460	ENSEBUG00000014515	ptcd1	93	39.318	Eptatretus_burgeri
ENSGMOG00000007639	ptcd1	91	48.034	ENSEASG00005002480	-	82	48.805	Equus_asinus_asinus
ENSGMOG00000007639	ptcd1	91	48.034	ENSECAG00000016617	-	82	48.805	Equus_caballus
ENSGMOG00000007639	ptcd1	98	54.134	ENSELUG00000016517	ptcd1	85	54.134	Esox_lucius
ENSGMOG00000007639	ptcd1	91	47.279	ENSFCAG00000015069	-	82	47.931	Felis_catus
ENSGMOG00000007639	ptcd1	84	47.731	ENSFALG00000013803	-	82	46.362	Ficedula_albicollis
ENSGMOG00000007639	ptcd1	91	46.907	ENSFDAG00000006393	-	82	47.423	Fukomys_damarensis
ENSGMOG00000007639	ptcd1	89	63.423	ENSFHEG00000012491	ptcd1	95	63.423	Fundulus_heteroclitus
ENSGMOG00000007639	ptcd1	84	47.645	ENSGALG00000004711	-	82	46.374	Gallus_gallus
ENSGMOG00000007639	ptcd1	96	62.810	ENSGAFG00000013175	ptcd1	88	62.903	Gambusia_affinis
ENSGMOG00000007639	ptcd1	99	63.124	ENSGACG00000016607	ptcd1	96	63.124	Gasterosteus_aculeatus
ENSGMOG00000007639	ptcd1	87	47.834	ENSGAGG00000021832	-	82	47.834	Gopherus_agassizii
ENSGMOG00000007639	ptcd1	96	47.136	ENSGGOG00000015123	-	87	47.136	Gorilla_gorilla
ENSGMOG00000007639	ptcd1	99	63.057	ENSHBUG00000018275	ptcd1	87	63.057	Haplochromis_burtoni
ENSGMOG00000007639	ptcd1	95	46.787	ENSHGLG00000017621	-	86	46.787	Heterocephalus_glaber_female
ENSGMOG00000007639	ptcd1	95	46.787	ENSHGLG00100007218	-	86	46.787	Heterocephalus_glaber_male
ENSGMOG00000007639	ptcd1	98	56.322	ENSHCOG00000010784	ptcd1	87	56.721	Hippocampus_comes
ENSGMOG00000007639	ptcd1	91	48.199	ENSSTOG00000001682	-	82	48.630	Ictidomys_tridecemlineatus
ENSGMOG00000007639	ptcd1	94	46.040	ENSJJAG00000000319	Ptcd1	87	46.040	Jaculus_jaculus
ENSGMOG00000007639	ptcd1	99	60.254	ENSKMAG00000008708	ptcd1	88	60.572	Kryptolebias_marmoratus
ENSGMOG00000007639	ptcd1	99	61.356	ENSLBEG00000008061	ptcd1	86	61.490	Labrus_bergylta
ENSGMOG00000007639	ptcd1	92	49.228	ENSLACG00000011172	ptcd1	81	49.228	Latimeria_chalumnae
ENSGMOG00000007639	ptcd1	94	48.428	ENSLOCG00000004833	ptcd1	95	48.355	Lepisosteus_oculatus
ENSGMOG00000007639	ptcd1	91	46.128	ENSLAFG00000002588	-	82	46.128	Loxodonta_africana
ENSGMOG00000007639	ptcd1	96	47.611	ENSMFAG00000041324	-	86	47.611	Macaca_fascicularis
ENSGMOG00000007639	ptcd1	96	47.611	ENSMMUG00000030408	-	86	47.611	Macaca_mulatta
ENSGMOG00000007639	ptcd1	96	47.611	ENSMNEG00000043786	-	86	47.611	Macaca_nemestrina
ENSGMOG00000007639	ptcd1	96	34.615	ENSMLEG00000031179	-	85	34.950	Mandrillus_leucophaeus
ENSGMOG00000007639	ptcd1	100	62.179	ENSMAMG00000007623	ptcd1	86	62.179	Mastacembelus_armatus
ENSGMOG00000007639	ptcd1	99	62.839	ENSMZEG00005012722	ptcd1	87	62.839	Maylandia_zebra
ENSGMOG00000007639	ptcd1	84	48.704	ENSMGAG00000004211	-	76	46.816	Meleagris_gallopavo
ENSGMOG00000007639	ptcd1	94	45.813	ENSMICG00000017428	-	86	45.977	Microcebus_murinus
ENSGMOG00000007639	ptcd1	100	60.377	ENSMMOG00000020243	ptcd1	89	61.993	Mola_mola
ENSGMOG00000007639	ptcd1	91	46.555	ENSMODG00000001350	-	80	46.555	Monodelphis_domestica
ENSGMOG00000007639	ptcd1	97	64.851	ENSMALG00000018442	ptcd1	86	64.331	Monopterus_albus
ENSGMOG00000007639	ptcd1	93	46.325	MGP_CAROLIEiJ_G0028011	Ptcd1	84	46.325	Mus_caroli
ENSGMOG00000007639	ptcd1	93	46.062	ENSMUSG00000029624	Ptcd1	84	46.154	Mus_musculus
ENSGMOG00000007639	ptcd1	93	46.747	MGP_PahariEiJ_G0024580	Ptcd1	84	46.747	Mus_pahari
ENSGMOG00000007639	ptcd1	93	46.062	MGP_SPRETEiJ_G0029012	Ptcd1	84	46.154	Mus_spretus
ENSGMOG00000007639	ptcd1	91	48.276	ENSMPUG00000016518	-	82	48.793	Mustela_putorius_furo
ENSGMOG00000007639	ptcd1	85	50.000	ENSMLUG00000010994	-	77	48.359	Myotis_lucifugus
ENSGMOG00000007639	ptcd1	95	63.228	ENSNBRG00000010079	ptcd1	82	65.794	Neolamprologus_brichardi
ENSGMOG00000007639	ptcd1	84	47.339	ENSNLEG00000011060	-	92	47.339	Nomascus_leucogenys
ENSGMOG00000007639	ptcd1	91	45.470	ENSMEUG00000006930	-	83	45.470	Notamacropus_eugenii
ENSGMOG00000007639	ptcd1	79	54.206	ENSOPRG00000013647	-	72	54.206	Ochotona_princeps
ENSGMOG00000007639	ptcd1	96	60.531	ENSONIG00000003168	ptcd1	99	60.531	Oreochromis_niloticus
ENSGMOG00000007639	ptcd1	87	43.806	ENSOANG00000007728	-	72	43.806	Ornithorhynchus_anatinus
ENSGMOG00000007639	ptcd1	91	47.660	ENSOCUG00000010584	-	80	47.660	Oryctolagus_cuniculus
ENSGMOG00000007639	ptcd1	95	63.131	ENSORLG00000009275	ptcd1	86	63.131	Oryzias_latipes
ENSGMOG00000007639	ptcd1	94	62.906	ENSORLG00020000988	ptcd1	86	62.906	Oryzias_latipes_hni
ENSGMOG00000007639	ptcd1	94	62.925	ENSORLG00015010557	ptcd1	86	62.925	Oryzias_latipes_hsok
ENSGMOG00000007639	ptcd1	95	61.824	ENSOMEG00000020627	ptcd1	88	61.824	Oryzias_melastigma
ENSGMOG00000007639	ptcd1	91	46.735	ENSOGAG00000010877	-	83	46.735	Otolemur_garnettii
ENSGMOG00000007639	ptcd1	91	43.688	ENSOARG00000018676	-	82	43.947	Ovis_aries
ENSGMOG00000007639	ptcd1	91	48.354	ENSPPAG00000036024	-	82	48.354	Pan_paniscus
ENSGMOG00000007639	ptcd1	91	47.521	ENSPPRG00000003478	-	83	47.521	Panthera_pardus
ENSGMOG00000007639	ptcd1	91	48.527	ENSPTRG00000019452	-	82	48.527	Pan_troglodytes
ENSGMOG00000007639	ptcd1	96	47.611	ENSPANG00000016730	-	86	47.611	Papio_anubis
ENSGMOG00000007639	ptcd1	91	49.913	ENSPKIG00000014215	ptcd1	83	50.259	Paramormyrops_kingsleyae
ENSGMOG00000007639	ptcd1	91	45.563	ENSPSIG00000011184	-	97	45.826	Pelodiscus_sinensis
ENSGMOG00000007639	ptcd1	81	40.076	ENSPMAG00000009667	ptcd1	99	40.076	Petromyzon_marinus
ENSGMOG00000007639	ptcd1	91	44.538	ENSPCIG00000024778	-	80	44.538	Phascolarctos_cinereus
ENSGMOG00000007639	ptcd1	98	61.353	ENSPFOG00000004458	ptcd1	87	62.058	Poecilia_formosa
ENSGMOG00000007639	ptcd1	98	61.650	ENSPLAG00000011051	ptcd1	87	62.298	Poecilia_latipinna
ENSGMOG00000007639	ptcd1	98	61.637	ENSPMEG00000020547	ptcd1	87	61.798	Poecilia_mexicana
ENSGMOG00000007639	ptcd1	99	61.146	ENSPREG00000000059	ptcd1	88	61.465	Poecilia_reticulata
ENSGMOG00000007639	ptcd1	91	48.354	ENSPPYG00000017377	-	87	48.354	Pongo_abelii
ENSGMOG00000007639	ptcd1	79	54.545	ENSPCAG00000001852	-	79	54.545	Procavia_capensis
ENSGMOG00000007639	ptcd1	91	48.187	ENSPCOG00000018596	-	82	48.532	Propithecus_coquereli
ENSGMOG00000007639	ptcd1	54	58.120	ENSPVAG00000007529	-	54	58.120	Pteropus_vampyrus
ENSGMOG00000007639	ptcd1	99	62.739	ENSPNYG00000019993	ptcd1	87	62.739	Pundamilia_nyererei
ENSGMOG00000007639	ptcd1	91	51.458	ENSPNAG00000014931	ptcd1	86	50.495	Pygocentrus_nattereri
ENSGMOG00000007639	ptcd1	91	47.668	ENSRNOG00000000987	Ptcd1	84	47.668	Rattus_norvegicus
ENSGMOG00000007639	ptcd1	96	47.117	ENSRBIG00000043393	-	87	47.117	Rhinopithecus_bieti
ENSGMOG00000007639	ptcd1	96	47.117	ENSRROG00000036420	-	87	47.117	Rhinopithecus_roxellana
ENSGMOG00000007639	ptcd1	95	47.438	ENSSBOG00000024114	-	86	47.438	Saimiri_boliviensis_boliviensis
ENSGMOG00000007639	ptcd1	95	45.320	ENSSHAG00000011376	-	92	45.320	Sarcophilus_harrisii
ENSGMOG00000007639	ptcd1	91	50.673	ENSSFOG00015007909	ptcd1	79	51.178	Scleropages_formosus
ENSGMOG00000007639	ptcd1	99	57.302	ENSSMAG00000000218	ptcd1	98	57.937	Scophthalmus_maximus
ENSGMOG00000007639	ptcd1	94	64.874	ENSSDUG00000015671	ptcd1	85	64.874	Seriola_dumerili
ENSGMOG00000007639	ptcd1	94	63.105	ENSSLDG00000014261	ptcd1	84	63.105	Seriola_lalandi_dorsalis
ENSGMOG00000007639	ptcd1	91	45.561	ENSSPUG00000003540	-	80	46.566	Sphenodon_punctatus
ENSGMOG00000007639	ptcd1	99	60.664	ENSSPAG00000011049	ptcd1	87	61.137	Stegastes_partitus
ENSGMOG00000007639	ptcd1	91	48.714	ENSSSCG00000007622	-	87	48.714	Sus_scrofa
ENSGMOG00000007639	ptcd1	84	48.148	ENSTGUG00000007563	-	94	46.207	Taeniopygia_guttata
ENSGMOG00000007639	ptcd1	95	61.074	ENSTRUG00000013471	ptcd1	86	59.649	Takifugu_rubripes
ENSGMOG00000007639	ptcd1	95	60.336	ENSTNIG00000008271	ptcd1	86	60.336	Tetraodon_nigroviridis
ENSGMOG00000007639	ptcd1	91	47.692	ENSTBEG00000011021	-	83	47.692	Tupaia_belangeri
ENSGMOG00000007639	ptcd1	91	47.049	ENSTTRG00000003006	-	82	47.049	Tursiops_truncatus
ENSGMOG00000007639	ptcd1	95	46.535	ENSUAMG00000008049	-	86	47.030	Ursus_americanus
ENSGMOG00000007639	ptcd1	91	49.223	ENSVVUG00000008836	-	82	49.223	Vulpes_vulpes
ENSGMOG00000007639	ptcd1	91	45.167	ENSXETG00000009891	ptcd1	83	45.167	Xenopus_tropicalis
ENSGMOG00000007639	ptcd1	98	62.378	ENSXMAG00000015540	ptcd1	87	62.439	Xiphophorus_maculatus