EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGMOG00000007725 (Gene tree)
Gene ID: -
Gene Symbol: polr2a
Alias: im:7136071
Full Name: polymerase (RNA) II (DNA directed) polypeptide A
Gene Type: protein_coding
Species: Gadus_morhua
Status: putative
Strand: Plus strand
Length: 11929 bases
Position: chrGeneScaffold_4013:80216-92144
Accession: ZDB-GENE-041008-78
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGMOP00000008275	RNA_pol_Rpb1_5	PF04998.17	1.4e-91	1	1
ENSGMOP00000008275	RNA_pol_Rpb1_4	PF05000.17	6.4e-38	1	1
ENSGMOP00000008275	RNA_pol_Rpb1_2	PF00623.20	5.1e-75	1	1
ENSGMOP00000008275	RNA_pol_Rpb1_3	PF04983.18	3e-49	1	1
ENSGMOP00000008275	RNA_pol_Rpb1_1	PF04997.12	2.4e-109	1	1
ENSGMOP00000008275	RNA_pol_Rpb1_7	PF04990.12	5.8e-55	1	1
ENSGMOP00000008275	RNA_pol_Rpb1_6	PF04992.14	8.7e-63	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGMOT00000008510	-	4959	-	ENSGMOP00000008275	1653 (aa)	-	UPI00023F171E

Gene Model

Click here to download ENSGMOG00000007725's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGMOG00000007725's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGMOG00000007725	polr2a	59	38.760	ENSGMOG00000002230	polr1a	66	38.760
ENSGMOG00000007725	polr2a	79	38.377	ENSGMOG00000000291	polr3a	91	38.377

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGMOG00000007725	polr2a	100	93.193	ENSAPOG00000006552	polr2a	91	93.193	Acanthochromis_polyacanthus
ENSGMOG00000007725	polr2a	100	100.000	ENSAMEG00000016265	-	99	90.018	Ailuropoda_melanoleuca
ENSGMOG00000007725	polr2a	100	90.738	ENSACIG00000015982	polr2a	99	90.723	Amphilophus_citrinellus
ENSGMOG00000007725	polr2a	100	93.313	ENSAOCG00000004255	polr2a	97	91.084	Amphiprion_ocellaris
ENSGMOG00000007725	polr2a	100	93.313	ENSAPEG00000012623	polr2a	99	93.313	Amphiprion_percula
ENSGMOG00000007725	polr2a	100	92.857	ENSATEG00000019644	polr2a	99	92.831	Anabas_testudineus
ENSGMOG00000007725	polr2a	99	90.655	ENSACAG00000014561	POLR2A	99	90.597	Anolis_carolinensis
ENSGMOG00000007725	polr2a	100	100.000	ENSANAG00000020093	-	99	90.361	Aotus_nancymaae
ENSGMOG00000007725	polr2a	100	92.433	ENSACLG00000006735	polr2a	99	92.410	Astatotilapia_calliptera
ENSGMOG00000007725	polr2a	100	93.133	ENSAMXG00000020046	polr2a	99	93.133	Astyanax_mexicanus
ENSGMOG00000007725	polr2a	100	100.000	ENSBTAG00000046765	POLR2A	99	90.361	Bos_taurus
ENSGMOG00000007725	polr2a	99	68.418	WBGene00000123	ama-1	96	68.592	Caenorhabditis_elegans
ENSGMOG00000007725	polr2a	100	100.000	ENSCAFG00000016532	POLR2A	99	90.301	Canis_familiaris
ENSGMOG00000007725	polr2a	100	100.000	ENSCAFG00020007929	-	99	89.464	Canis_lupus_dingo
ENSGMOG00000007725	polr2a	100	100.000	ENSCHIG00000027173	-	99	90.361	Capra_hircus
ENSGMOG00000007725	polr2a	100	92.497	ENSTSYG00000012803	-	97	88.661	Carlito_syrichta
ENSGMOG00000007725	polr2a	98	93.038	ENSCAPG00000001882	-	99	90.024	Cavia_aperea
ENSGMOG00000007725	polr2a	100	92.962	ENSCPOG00000014812	-	99	89.880	Cavia_porcellus
ENSGMOG00000007725	polr2a	100	100.000	ENSCCAG00000020938	-	99	90.361	Cebus_capucinus
ENSGMOG00000007725	polr2a	100	100.000	ENSCATG00000013680	-	99	90.361	Cercocebus_atys
ENSGMOG00000007725	polr2a	100	100.000	ENSCLAG00000012196	-	99	90.241	Chinchilla_lanigera
ENSGMOG00000007725	polr2a	100	100.000	ENSCSAG00000011644	-	99	82.455	Chlorocebus_sabaeus
ENSGMOG00000007725	polr2a	97	100.000	ENSCPBG00000012697	POLR2A	98	86.807	Chrysemys_picta_bellii
ENSGMOG00000007725	polr2a	99	75.197	ENSCING00000007884	-	98	75.332	Ciona_intestinalis
ENSGMOG00000007725	polr2a	94	76.830	ENSCSAVG00000008334	-	99	72.869	Ciona_savignyi
ENSGMOG00000007725	polr2a	100	89.751	ENSCANG00000010622	-	99	89.699	Colobus_angolensis_palliatus
ENSGMOG00000007725	polr2a	100	87.806	ENSCGRG00001003538	Polr2a	98	83.808	Cricetulus_griseus_chok1gshd
ENSGMOG00000007725	polr2a	95	90.006	ENSCGRG00000012105	Polr2a	95	87.448	Cricetulus_griseus_crigri
ENSGMOG00000007725	polr2a	100	92.494	ENSCSEG00000002635	polr2a	99	92.470	Cynoglossus_semilaevis
ENSGMOG00000007725	polr2a	100	93.220	ENSCVAG00000005156	polr2a	99	93.193	Cyprinodon_variegatus
ENSGMOG00000007725	polr2a	100	93.008	ENSDARG00000099966	polr2a	99	93.008	Danio_rerio
ENSGMOG00000007725	polr2a	100	100.000	ENSDNOG00000016482	-	99	87.651	Dasypus_novemcinctus
ENSGMOG00000007725	polr2a	100	100.000	ENSDORG00000008667	Polr2a	99	90.361	Dipodomys_ordii
ENSGMOG00000007725	polr2a	94	75.161	FBgn0003277	RpII215	85	72.733	Drosophila_melanogaster
ENSGMOG00000007725	polr2a	93	84.367	ENSETEG00000002540	-	80	85.738	Echinops_telfairi
ENSGMOG00000007725	polr2a	100	82.979	ENSEBUG00000013967	polr2a	99	82.892	Eptatretus_burgeri
ENSGMOG00000007725	polr2a	100	88.478	ENSEASG00005019114	-	99	88.434	Equus_asinus_asinus
ENSGMOG00000007725	polr2a	100	100.000	ENSECAG00000018485	POLR2A	99	90.361	Equus_caballus
ENSGMOG00000007725	polr2a	90	92.981	ENSEEUG00000001154	-	91	92.981	Erinaceus_europaeus
ENSGMOG00000007725	polr2a	99	90.313	ENSELUG00000014284	polr2a	88	90.299	Esox_lucius
ENSGMOG00000007725	polr2a	100	100.000	ENSFDAG00000008287	-	99	90.422	Fukomys_damarensis
ENSGMOG00000007725	polr2a	100	93.160	ENSFHEG00000001768	polr2a	96	93.193	Fundulus_heteroclitus
ENSGMOG00000007725	polr2a	100	100.000	ENSGAFG00000005389	polr2a	99	100.000	Gambusia_affinis
ENSGMOG00000007725	polr2a	100	93.901	ENSGACG00000019366	polr2a	100	93.901	Gasterosteus_aculeatus
ENSGMOG00000007725	polr2a	100	89.547	ENSGGOG00000014800	-	96	92.566	Gorilla_gorilla
ENSGMOG00000007725	polr2a	100	92.433	ENSHBUG00000018937	polr2a	97	92.410	Haplochromis_burtoni
ENSGMOG00000007725	polr2a	100	100.000	ENSHGLG00000012381	POLR2A	99	90.422	Heterocephalus_glaber_female
ENSGMOG00000007725	polr2a	100	100.000	ENSHGLG00100014843	POLR2A	99	90.422	Heterocephalus_glaber_male
ENSGMOG00000007725	polr2a	100	92.615	ENSHCOG00000011874	polr2a	99	92.590	Hippocampus_comes
ENSGMOG00000007725	polr2a	100	92.736	ENSIPUG00000002613	Polr2a	99	92.711	Ictalurus_punctatus
ENSGMOG00000007725	polr2a	100	100.000	ENSSTOG00000001304	-	99	90.361	Ictidomys_tridecemlineatus
ENSGMOG00000007725	polr2a	100	100.000	ENSJJAG00000013049	Polr2a	99	90.361	Jaculus_jaculus
ENSGMOG00000007725	polr2a	92	95.977	ENSKMAG00000016343	polr2a	85	95.977	Kryptolebias_marmoratus
ENSGMOG00000007725	polr2a	100	93.099	ENSLBEG00000027652	polr2a	99	93.072	Labrus_bergylta
ENSGMOG00000007725	polr2a	98	100.000	ENSLACG00000012071	POLR2A	99	81.824	Latimeria_chalumnae
ENSGMOG00000007725	polr2a	100	93.112	ENSLOCG00000013863	polr2a	99	93.112	Lepisosteus_oculatus
ENSGMOG00000007725	polr2a	100	100.000	ENSLAFG00000008626	-	99	90.361	Loxodonta_africana
ENSGMOG00000007725	polr2a	59	92.828	ENSMFAG00000007042	-	99	92.828	Macaca_fascicularis
ENSGMOG00000007725	polr2a	100	100.000	ENSMMUG00000023620	-	99	90.361	Macaca_mulatta
ENSGMOG00000007725	polr2a	100	100.000	ENSMNEG00000040407	-	99	89.940	Macaca_nemestrina
ENSGMOG00000007725	polr2a	99	85.844	ENSMLEG00000030263	-	99	92.828	Mandrillus_leucophaeus
ENSGMOG00000007725	polr2a	100	92.676	ENSMAMG00000003351	polr2a	99	92.651	Mastacembelus_armatus
ENSGMOG00000007725	polr2a	100	92.433	ENSMZEG00005021429	polr2a	99	92.410	Maylandia_zebra
ENSGMOG00000007725	polr2a	59	93.795	ENSMAUG00000021055	-	99	93.795	Mesocricetus_auratus
ENSGMOG00000007725	polr2a	100	100.000	ENSMICG00000013372	-	98	93.326	Microcebus_murinus
ENSGMOG00000007725	polr2a	100	88.469	ENSMOCG00000018279	Polr2a	92	86.566	Microtus_ochrogaster
ENSGMOG00000007725	polr2a	100	92.252	ENSMMOG00000012515	polr2a	94	92.229	Mola_mola
ENSGMOG00000007725	polr2a	100	100.000	ENSMODG00000007009	-	99	90.241	Monodelphis_domestica
ENSGMOG00000007725	polr2a	100	100.000	ENSMALG00000008716	polr2a	99	100.000	Monopterus_albus
ENSGMOG00000007725	polr2a	100	90.418	MGP_CAROLIEiJ_G0016587	Polr2a	99	90.361	Mus_caroli
ENSGMOG00000007725	polr2a	100	90.418	ENSMUSG00000005198	Polr2a	99	90.361	Mus_musculus
ENSGMOG00000007725	polr2a	100	100.000	MGP_PahariEiJ_G0017718	Polr2a	99	88.362	Mus_pahari
ENSGMOG00000007725	polr2a	100	90.418	MGP_SPRETEiJ_G0017423	Polr2a	99	90.361	Mus_spretus
ENSGMOG00000007725	polr2a	100	100.000	ENSMPUG00000009648	-	99	90.241	Mustela_putorius_furo
ENSGMOG00000007725	polr2a	100	100.000	ENSMLUG00000009088	-	99	89.771	Myotis_lucifugus
ENSGMOG00000007725	polr2a	100	100.000	ENSNGAG00000002543	Polr2a	99	90.361	Nannospalax_galili
ENSGMOG00000007725	polr2a	100	90.436	ENSNBRG00000002005	polr2a	99	90.422	Neolamprologus_brichardi
ENSGMOG00000007725	polr2a	100	88.990	ENSNLEG00000009460	-	99	88.942	Nomascus_leucogenys
ENSGMOG00000007725	polr2a	89	95.071	ENSMEUG00000008611	-	87	95.071	Notamacropus_eugenii
ENSGMOG00000007725	polr2a	96	92.916	ENSOPRG00000015116	-	99	92.916	Ochotona_princeps
ENSGMOG00000007725	polr2a	99	92.910	ENSODEG00000017674	-	98	86.675	Octodon_degus
ENSGMOG00000007725	polr2a	100	92.711	ENSONIG00000009231	polr2a	99	92.711	Oreochromis_niloticus
ENSGMOG00000007725	polr2a	56	93.369	ENSOANG00000003303	-	98	93.369	Ornithorhynchus_anatinus
ENSGMOG00000007725	polr2a	100	100.000	ENSOCUG00000017929	-	97	90.198	Oryctolagus_cuniculus
ENSGMOG00000007725	polr2a	100	92.892	ENSORLG00000006431	polr2a	99	92.892	Oryzias_latipes
ENSGMOG00000007725	polr2a	100	92.892	ENSORLG00020010235	polr2a	99	92.892	Oryzias_latipes_hni
ENSGMOG00000007725	polr2a	100	92.892	ENSORLG00015007075	polr2a	99	92.892	Oryzias_latipes_hsok
ENSGMOG00000007725	polr2a	99	93.009	ENSOMEG00000010713	polr2a	99	95.770	Oryzias_melastigma
ENSGMOG00000007725	polr2a	100	100.000	ENSOGAG00000033608	-	99	90.361	Otolemur_garnettii
ENSGMOG00000007725	polr2a	99	90.418	ENSOARG00000013874	-	99	90.361	Ovis_aries
ENSGMOG00000007725	polr2a	100	88.617	ENSPPAG00000043734	-	94	88.406	Pan_paniscus
ENSGMOG00000007725	polr2a	100	88.990	ENSPTRG00000008691	POLR2A	99	88.942	Pan_troglodytes
ENSGMOG00000007725	polr2a	100	89.751	ENSPANG00000024099	-	99	89.699	Papio_anubis
ENSGMOG00000007725	polr2a	96	94.917	ENSPKIG00000005727	polr2a	84	94.917	Paramormyrops_kingsleyae
ENSGMOG00000007725	polr2a	100	87.189	ENSPSIG00000014006	POLR2A	99	88.842	Pelodiscus_sinensis
ENSGMOG00000007725	polr2a	100	93.120	ENSPMGG00000019734	polr2a	99	92.045	Periophthalmus_magnuspinnatus
ENSGMOG00000007725	polr2a	100	100.000	ENSPEMG00000012521	Polr2a	99	90.361	Peromyscus_maniculatus_bairdii
ENSGMOG00000007725	polr2a	99	90.248	ENSPCIG00000028851	-	82	90.248	Phascolarctos_cinereus
ENSGMOG00000007725	polr2a	100	93.281	ENSPFOG00000007890	polr2a	96	93.253	Poecilia_formosa
ENSGMOG00000007725	polr2a	100	93.281	ENSPLAG00000007399	polr2a	96	93.253	Poecilia_latipinna
ENSGMOG00000007725	polr2a	100	93.281	ENSPMEG00000002071	polr2a	96	93.253	Poecilia_mexicana
ENSGMOG00000007725	polr2a	100	93.193	ENSPREG00000013122	polr2a	99	93.193	Poecilia_reticulata
ENSGMOG00000007725	polr2a	100	100.000	ENSPPYG00000007924	-	99	90.361	Pongo_abelii
ENSGMOG00000007725	polr2a	90	100.000	ENSPCAG00000006951	-	91	94.702	Procavia_capensis
ENSGMOG00000007725	polr2a	100	100.000	ENSPCOG00000025260	-	99	89.134	Propithecus_coquereli
ENSGMOG00000007725	polr2a	99	90.170	ENSPVAG00000005069	-	99	90.115	Pteropus_vampyrus
ENSGMOG00000007725	polr2a	100	92.494	ENSPNYG00000022340	polr2a	99	92.470	Pundamilia_nyererei
ENSGMOG00000007725	polr2a	100	93.133	ENSPNAG00000011237	polr2a	99	93.133	Pygocentrus_nattereri
ENSGMOG00000007725	polr2a	100	100.000	ENSRNOG00000028834	Polr2a	99	90.301	Rattus_norvegicus
ENSGMOG00000007725	polr2a	99	90.055	ENSRBIG00000002471	-	95	88.193	Rhinopithecus_bieti
ENSGMOG00000007725	polr2a	100	100.000	ENSRROG00000029583	-	98	90.361	Rhinopithecus_roxellana
ENSGMOG00000007725	polr2a	94	49.843	YDL140C	RPO21	99	48.996	Saccharomyces_cerevisiae
ENSGMOG00000007725	polr2a	100	100.000	ENSSBOG00000000808	-	99	90.361	Saimiri_boliviensis_boliviensis
ENSGMOG00000007725	polr2a	100	90.297	ENSSHAG00000002858	-	97	90.241	Sarcophilus_harrisii
ENSGMOG00000007725	polr2a	100	92.857	ENSSFOG00015023275	polr2a	99	92.831	Scleropages_formosus
ENSGMOG00000007725	polr2a	100	92.797	ENSSMAG00000009137	polr2a	99	92.771	Scophthalmus_maximus
ENSGMOG00000007725	polr2a	100	93.012	ENSSDUG00000020466	polr2a	99	93.012	Seriola_dumerili
ENSGMOG00000007725	polr2a	100	93.072	ENSSLDG00000020613	polr2a	99	93.072	Seriola_lalandi_dorsalis
ENSGMOG00000007725	polr2a	99	87.091	ENSSARG00000005875	-	97	87.258	Sorex_araneus
ENSGMOG00000007725	polr2a	100	93.313	ENSSPAG00000016741	polr2a	92	93.313	Stegastes_partitus
ENSGMOG00000007725	polr2a	100	100.000	ENSSSCG00000028278	-	99	89.458	Sus_scrofa
ENSGMOG00000007725	polr2a	99	87.659	ENSTRUG00000012320	polr2a	81	87.742	Takifugu_rubripes
ENSGMOG00000007725	polr2a	100	100.000	ENSTNIG00000010136	polr2a	99	91.782	Tetraodon_nigroviridis
ENSGMOG00000007725	polr2a	65	100.000	ENSTBEG00000013294	-	56	100.000	Tupaia_belangeri
ENSGMOG00000007725	polr2a	100	100.000	ENSTTRG00000014273	-	99	88.735	Tursiops_truncatus
ENSGMOG00000007725	polr2a	99	100.000	ENSUAMG00000014866	-	92	100.000	Ursus_americanus
ENSGMOG00000007725	polr2a	91	100.000	ENSUMAG00000015732	-	98	91.954	Ursus_maritimus
ENSGMOG00000007725	polr2a	58	96.196	ENSVPAG00000008842	-	73	96.196	Vicugna_pacos
ENSGMOG00000007725	polr2a	100	100.000	ENSVVUG00000027878	-	99	90.301	Vulpes_vulpes
ENSGMOG00000007725	polr2a	99	89.828	ENSXETG00000012465	polr2a	99	89.775	Xenopus_tropicalis
ENSGMOG00000007725	polr2a	100	100.000	ENSXCOG00000001804	polr2a	99	90.843	Xiphophorus_couchianus
ENSGMOG00000007725	polr2a	100	93.160	ENSXMAG00000015687	polr2a	99	93.133	Xiphophorus_maculatus