EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGMOG00000007729 (Gene tree)
Gene ID: -
Gene Symbol: lsm4
Alias: zgc:73057|zgc:77848
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Gadus_morhua
Status: putative
Strand: Minus strand
Length: 1446 bases
Position: chrGeneScaffold_2816:11652-13097
Accession: ZDB-GENE-040426-1652
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGMOP00000008276	LSM	PF01423.22	7.5e-17	1	1
ENSGMOP00000008272	LSM	PF01423.22	7.6e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGMOT00000008512	-	441	-	ENSGMOP00000008276	147 (aa)	-	UPI00023F1723
ENSGMOT00000008507	-	447	-	ENSGMOP00000008272	148 (aa)	-	UPI00023F1722

Gene Model

Click here to download ENSGMOG00000007729's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGMOG00000007729's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGMOG00000007729	lsm4	65	31.313	ENSGMOG00000019208	si:ch73-14h10.2	100	31.313

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGMOG00000007729	lsm4	59	98.851	ENSG00000130520	LSM4	97	74.627	Homo_sapiens
ENSGMOG00000007729	lsm4	99	78.146	ENSAPOG00000005643	lsm4	99	78.146	Acanthochromis_polyacanthus
ENSGMOG00000007729	lsm4	60	98.864	ENSAMEG00000011162	LSM4	66	96.907	Ailuropoda_melanoleuca
ENSGMOG00000007729	lsm4	99	78.667	ENSAOCG00000006414	lsm4	99	80.921	Amphiprion_ocellaris
ENSGMOG00000007729	lsm4	99	78.667	ENSAPEG00000006238	lsm4	99	79.085	Amphiprion_percula
ENSGMOG00000007729	lsm4	99	76.316	ENSATEG00000016559	lsm4	99	77.632	Anabas_testudineus
ENSGMOG00000007729	lsm4	59	98.851	ENSANAG00000034659	LSM4	98	72.727	Aotus_nancymaae
ENSGMOG00000007729	lsm4	99	81.579	ENSACLG00000022738	lsm4	99	78.912	Astatotilapia_calliptera
ENSGMOG00000007729	lsm4	99	85.034	ENSAMXG00000016932	lsm4	99	84.354	Astyanax_mexicanus
ENSGMOG00000007729	lsm4	60	98.864	ENSBTAG00000008578	LSM4	70	96.907	Bos_taurus
ENSGMOG00000007729	lsm4	56	76.829	WBGene00003078	lsm-4	80	68.687	Caenorhabditis_elegans
ENSGMOG00000007729	lsm4	59	98.851	ENSCJAG00000014171	LSM4	69	96.875	Callithrix_jacchus
ENSGMOG00000007729	lsm4	59	98.851	ENSCAFG00000014900	LSM4	63	96.875	Canis_familiaris
ENSGMOG00000007729	lsm4	59	98.851	ENSCAFG00020012137	LSM4	69	96.875	Canis_lupus_dingo
ENSGMOG00000007729	lsm4	60	98.864	ENSCHIG00000010928	LSM4	64	96.907	Capra_hircus
ENSGMOG00000007729	lsm4	59	97.701	ENSTSYG00000030906	LSM4	69	95.833	Carlito_syrichta
ENSGMOG00000007729	lsm4	59	97.701	ENSCAPG00000014140	LSM4	69	95.833	Cavia_aperea
ENSGMOG00000007729	lsm4	59	97.701	ENSCPOG00000024117	LSM4	69	95.833	Cavia_porcellus
ENSGMOG00000007729	lsm4	59	98.851	ENSCCAG00000036308	LSM4	69	96.875	Cebus_capucinus
ENSGMOG00000007729	lsm4	59	98.851	ENSCATG00000029311	LSM4	99	75.000	Cercocebus_atys
ENSGMOG00000007729	lsm4	95	78.723	ENSCLAG00000010828	LSM4	69	96.875	Chinchilla_lanigera
ENSGMOG00000007729	lsm4	59	98.851	ENSCSAG00000005370	LSM4	69	96.875	Chlorocebus_sabaeus
ENSGMOG00000007729	lsm4	59	100.000	ENSCPBG00000012925	LSM4	70	98.958	Chrysemys_picta_bellii
ENSGMOG00000007729	lsm4	84	73.171	ENSCING00000007519	-	72	92.308	Ciona_intestinalis
ENSGMOG00000007729	lsm4	71	82.692	ENSCSAVG00000008596	-	73	92.308	Ciona_savignyi
ENSGMOG00000007729	lsm4	59	98.851	ENSCANG00000043686	LSM4	99	72.857	Colobus_angolensis_palliatus
ENSGMOG00000007729	lsm4	59	95.402	ENSCGRG00001014436	Lsm4	69	93.750	Cricetulus_griseus_chok1gshd
ENSGMOG00000007729	lsm4	59	95.402	ENSCGRG00000009398	Lsm4	69	93.750	Cricetulus_griseus_crigri
ENSGMOG00000007729	lsm4	99	81.633	ENSCSEG00000016127	lsm4	99	81.633	Cynoglossus_semilaevis
ENSGMOG00000007729	lsm4	99	81.081	ENSCVAG00000010601	lsm4	99	82.313	Cyprinodon_variegatus
ENSGMOG00000007729	lsm4	90	78.358	ENSCVAG00000021828	lsm4	98	80.451	Cyprinodon_variegatus
ENSGMOG00000007729	lsm4	99	79.310	ENSDARG00000023852	lsm4	67	100.000	Danio_rerio
ENSGMOG00000007729	lsm4	95	78.014	ENSDORG00000024225	Lsm4	69	95.833	Dipodomys_ordii
ENSGMOG00000007729	lsm4	66	82.474	FBgn0032240	CG17768	62	82.292	Drosophila_melanogaster
ENSGMOG00000007729	lsm4	50	97.260	ENSETEG00000007762	-	66	95.122	Echinops_telfairi
ENSGMOG00000007729	lsm4	50	93.243	ENSEBUG00000003639	-	72	73.148	Eptatretus_burgeri
ENSGMOG00000007729	lsm4	93	85.401	ENSELUG00000012821	lsm4	73	100.000	Esox_lucius
ENSGMOG00000007729	lsm4	59	98.851	ENSFCAG00000040580	LSM4	69	96.875	Felis_catus
ENSGMOG00000007729	lsm4	60	100.000	ENSFALG00000009478	LSM4	70	98.969	Ficedula_albicollis
ENSGMOG00000007729	lsm4	59	98.851	ENSFDAG00000010124	LSM4	70	96.875	Fukomys_damarensis
ENSGMOG00000007729	lsm4	59	100.000	ENSGALG00000003385	LSM4	70	98.958	Gallus_gallus
ENSGMOG00000007729	lsm4	99	82.432	ENSGAFG00000004903	lsm4	97	77.444	Gambusia_affinis
ENSGMOG00000007729	lsm4	99	78.082	ENSGACG00000008140	lsm4	99	80.921	Gasterosteus_aculeatus
ENSGMOG00000007729	lsm4	59	100.000	ENSGAGG00000017812	LSM4	70	98.958	Gopherus_agassizii
ENSGMOG00000007729	lsm4	59	98.851	ENSGGOG00000012914	-	99	75.000	Gorilla_gorilla
ENSGMOG00000007729	lsm4	99	82.000	ENSHBUG00000008858	lsm4	79	81.333	Haplochromis_burtoni
ENSGMOG00000007729	lsm4	99	76.027	ENSHGLG00000006568	LSM4	98	78.014	Heterocephalus_glaber_female
ENSGMOG00000007729	lsm4	63	97.826	ENSHGLG00100007894	LSM4	99	97.826	Heterocephalus_glaber_male
ENSGMOG00000007729	lsm4	99	80.272	ENSHCOG00000008819	lsm4	99	81.633	Hippocampus_comes
ENSGMOG00000007729	lsm4	99	81.633	ENSIPUG00000005368	Lsm4	99	81.757	Ictalurus_punctatus
ENSGMOG00000007729	lsm4	59	98.851	ENSSTOG00000016494	LSM4	69	96.875	Ictidomys_tridecemlineatus
ENSGMOG00000007729	lsm4	59	96.552	ENSJJAG00000017420	Lsm4	69	94.792	Jaculus_jaculus
ENSGMOG00000007729	lsm4	58	98.824	ENSKMAG00000005073	lsm4	99	78.231	Kryptolebias_marmoratus
ENSGMOG00000007729	lsm4	99	79.195	ENSLBEG00000027930	lsm4	99	79.739	Labrus_bergylta
ENSGMOG00000007729	lsm4	59	100.000	ENSLACG00000015861	LSM4	69	98.958	Latimeria_chalumnae
ENSGMOG00000007729	lsm4	67	97.959	ENSLOCG00000002025	lsm4	99	82.313	Lepisosteus_oculatus
ENSGMOG00000007729	lsm4	60	97.727	ENSLAFG00000017459	LSM4	70	95.876	Loxodonta_africana
ENSGMOG00000007729	lsm4	59	98.851	ENSMFAG00000031194	LSM4	99	72.857	Macaca_fascicularis
ENSGMOG00000007729	lsm4	59	98.851	ENSMMUG00000004405	LSM4	69	96.875	Macaca_mulatta
ENSGMOG00000007729	lsm4	59	98.851	ENSMNEG00000042899	LSM4	99	72.857	Macaca_nemestrina
ENSGMOG00000007729	lsm4	59	98.851	ENSMLEG00000027948	LSM4	99	75.000	Mandrillus_leucophaeus
ENSGMOG00000007729	lsm4	99	83.673	ENSMAMG00000006190	lsm4	99	82.993	Mastacembelus_armatus
ENSGMOG00000007729	lsm4	99	81.333	ENSMZEG00005016420	lsm4	99	81.333	Maylandia_zebra
ENSGMOG00000007729	lsm4	94	86.331	ENSMGAG00000004976	LSM4	70	98.969	Meleagris_gallopavo
ENSGMOG00000007729	lsm4	95	78.723	ENSMICG00000000222	LSM4	69	95.833	Microcebus_murinus
ENSGMOG00000007729	lsm4	59	95.402	ENSMOCG00000020861	Lsm4	69	93.750	Microtus_ochrogaster
ENSGMOG00000007729	lsm4	50	100.000	ENSMODG00000015044	-	66	97.561	Monodelphis_domestica
ENSGMOG00000007729	lsm4	99	79.054	ENSMALG00000018159	lsm4	99	82.993	Monopterus_albus
ENSGMOG00000007729	lsm4	59	95.402	MGP_CAROLIEiJ_G0031158	Lsm4	69	93.750	Mus_caroli
ENSGMOG00000007729	lsm4	59	95.402	ENSMUSG00000031848	Lsm4	93	87.500	Mus_musculus
ENSGMOG00000007729	lsm4	59	95.402	MGP_PahariEiJ_G0021623	Lsm4	69	93.750	Mus_pahari
ENSGMOG00000007729	lsm4	59	95.402	MGP_SPRETEiJ_G0032276	Lsm4	69	93.750	Mus_spretus
ENSGMOG00000007729	lsm4	59	98.851	ENSMPUG00000015589	LSM4	69	96.875	Mustela_putorius_furo
ENSGMOG00000007729	lsm4	60	98.864	ENSMLUG00000004010	LSM4	70	96.907	Myotis_lucifugus
ENSGMOG00000007729	lsm4	59	95.402	ENSNGAG00000008644	Lsm4	69	93.750	Nannospalax_galili
ENSGMOG00000007729	lsm4	76	95.495	ENSNBRG00000022150	lsm4	67	95.495	Neolamprologus_brichardi
ENSGMOG00000007729	lsm4	50	95.890	ENSMEUG00000013229	LSM4	66	92.683	Notamacropus_eugenii
ENSGMOG00000007729	lsm4	86	77.953	ENSOPRG00000005575	LSM4	98	70.455	Ochotona_princeps
ENSGMOG00000007729	lsm4	95	70.213	ENSODEG00000004519	-	69	86.458	Octodon_degus
ENSGMOG00000007729	lsm4	95	78.723	ENSODEG00000020549	-	69	96.875	Octodon_degus
ENSGMOG00000007729	lsm4	99	81.579	ENSONIG00000012724	lsm4	99	78.912	Oreochromis_niloticus
ENSGMOG00000007729	lsm4	60	94.565	ENSOANG00000007434	LSM4	87	94.059	Ornithorhynchus_anatinus
ENSGMOG00000007729	lsm4	99	81.879	ENSORLG00000008391	lsm4	99	81.081	Oryzias_latipes
ENSGMOG00000007729	lsm4	99	81.757	ENSORLG00020014829	lsm4	99	76.871	Oryzias_latipes_hni
ENSGMOG00000007729	lsm4	99	81.081	ENSORLG00015010205	lsm4	99	76.871	Oryzias_latipes_hsok
ENSGMOG00000007729	lsm4	99	80.405	ENSOMEG00000003606	lsm4	99	80.405	Oryzias_melastigma
ENSGMOG00000007729	lsm4	67	94.949	ENSOGAG00000027992	LSM4	66	95.876	Otolemur_garnettii
ENSGMOG00000007729	lsm4	59	98.851	ENSOARG00000012553	LSM4	66	96.875	Ovis_aries
ENSGMOG00000007729	lsm4	59	98.851	ENSPPAG00000044045	-	98	72.932	Pan_paniscus
ENSGMOG00000007729	lsm4	59	98.851	ENSPPRG00000018264	LSM4	69	96.875	Panthera_pardus
ENSGMOG00000007729	lsm4	59	98.851	ENSPTIG00000006306	LSM4	70	96.875	Panthera_tigris_altaica
ENSGMOG00000007729	lsm4	59	98.851	ENSPTRG00000031470	LSM4	98	72.932	Pan_troglodytes
ENSGMOG00000007729	lsm4	59	98.851	ENSPANG00000014399	LSM4	99	75.000	Papio_anubis
ENSGMOG00000007729	lsm4	99	87.075	ENSPKIG00000006154	lsm4	99	83.673	Paramormyrops_kingsleyae
ENSGMOG00000007729	lsm4	59	100.000	ENSPSIG00000012358	LSM4	70	98.958	Pelodiscus_sinensis
ENSGMOG00000007729	lsm4	59	95.402	ENSPEMG00000001358	Lsm4	69	93.750	Peromyscus_maniculatus_bairdii
ENSGMOG00000007729	lsm4	99	82.432	ENSPFOG00000000570	lsm4	76	80.952	Poecilia_formosa
ENSGMOG00000007729	lsm4	99	81.081	ENSPLAG00000016267	lsm4	99	80.952	Poecilia_latipinna
ENSGMOG00000007729	lsm4	99	82.432	ENSPMEG00000016378	lsm4	99	80.952	Poecilia_mexicana
ENSGMOG00000007729	lsm4	99	79.054	ENSPREG00000011290	lsm4	76	81.633	Poecilia_reticulata
ENSGMOG00000007729	lsm4	59	98.851	ENSPPYG00000009736	LSM4	69	96.875	Pongo_abelii
ENSGMOG00000007729	lsm4	50	97.260	ENSPCAG00000008513	LSM4	66	95.122	Procavia_capensis
ENSGMOG00000007729	lsm4	95	78.723	ENSPCOG00000019837	LSM4	69	95.833	Propithecus_coquereli
ENSGMOG00000007729	lsm4	59	98.851	ENSPVAG00000015383	LSM4	69	96.875	Pteropus_vampyrus
ENSGMOG00000007729	lsm4	99	81.333	ENSPNYG00000016794	lsm4	99	81.333	Pundamilia_nyererei
ENSGMOG00000007729	lsm4	95	85.714	ENSPNAG00000016598	lsm4	100	76.190	Pygocentrus_nattereri
ENSGMOG00000007729	lsm4	59	95.402	ENSRNOG00000019572	Lsm4	69	93.750	Rattus_norvegicus
ENSGMOG00000007729	lsm4	59	98.851	ENSRBIG00000024717	LSM4	99	74.286	Rhinopithecus_bieti
ENSGMOG00000007729	lsm4	59	98.851	ENSRROG00000045706	LSM4	99	74.286	Rhinopithecus_roxellana
ENSGMOG00000007729	lsm4	56	40.217	YER112W	LSM4	51	39.583	Saccharomyces_cerevisiae
ENSGMOG00000007729	lsm4	50	98.649	ENSSBOG00000022455	LSM4	66	96.386	Saimiri_boliviensis_boliviensis
ENSGMOG00000007729	lsm4	59	100.000	ENSSHAG00000011559	LSM4	69	97.917	Sarcophilus_harrisii
ENSGMOG00000007729	lsm4	99	80.952	ENSSFOG00015021067	lsm4	99	84.354	Scleropages_formosus
ENSGMOG00000007729	lsm4	99	74.667	ENSSMAG00000021020	lsm4	99	77.273	Scophthalmus_maximus
ENSGMOG00000007729	lsm4	99	70.659	ENSSDUG00000009588	lsm4	99	66.467	Seriola_dumerili
ENSGMOG00000007729	lsm4	99	67.857	ENSSLDG00000006827	lsm4	99	66.071	Seriola_lalandi_dorsalis
ENSGMOG00000007729	lsm4	60	100.000	ENSSPUG00000010166	LSM4	63	98.969	Sphenodon_punctatus
ENSGMOG00000007729	lsm4	99	77.483	ENSSPAG00000011615	lsm4	99	80.000	Stegastes_partitus
ENSGMOG00000007729	lsm4	59	98.851	ENSSSCG00000034314	LSM4	69	96.875	Sus_scrofa
ENSGMOG00000007729	lsm4	99	81.081	ENSTRUG00000021737	lsm4	99	79.592	Takifugu_rubripes
ENSGMOG00000007729	lsm4	99	81.757	ENSTNIG00000010191	lsm4	99	80.272	Tetraodon_nigroviridis
ENSGMOG00000007729	lsm4	60	98.864	ENSUAMG00000000665	LSM4	79	96.875	Ursus_americanus
ENSGMOG00000007729	lsm4	59	98.851	ENSUMAG00000009013	LSM4	69	96.875	Ursus_maritimus
ENSGMOG00000007729	lsm4	60	97.727	ENSVVUG00000008136	LSM4	50	95.876	Vulpes_vulpes
ENSGMOG00000007729	lsm4	65	97.917	ENSXETG00000024933	lsm4	70	97.917	Xenopus_tropicalis
ENSGMOG00000007729	lsm4	99	82.432	ENSXMAG00000026672	lsm4	76	80.952	Xiphophorus_maculatus