EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGMOG00000007943 (Gene tree)
Gene ID: -
Gene Symbol: apex1
Alias: hm:zehn1532|wu:fc13d11|zap1|zgc:66204
Full Name: APEX nuclease (multifunctional DNA repair enzyme) 1
Gene Type: protein_coding
Species: Gadus_morhua
Status: putative
Strand: Plus strand
Length: 1926 bases
Position: chrGeneScaffold_3983:16032-17957
Accession: ZDB-GENE-040426-2761
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGMOP00000008488	Exo_endo_phos	PF03372.23	1.2e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGMOT00000008727	-	933	-	ENSGMOP00000008488	310 (aa)	-	UPI00023F1593

Gene Model

Click here to download ENSGMOG00000007943's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGMOG00000007943's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGMOG00000007943	apex1	99	61.442	ENSG00000100823	APEX1	99	61.635	Homo_sapiens
ENSGMOG00000007943	apex1	99	75.241	ENSAPOG00000017002	apex1	100	75.241	Acanthochromis_polyacanthus
ENSGMOG00000007943	apex1	99	61.392	ENSAMEG00000005418	APEX1	99	61.635	Ailuropoda_melanoleuca
ENSGMOG00000007943	apex1	89	78.623	ENSACIG00000010653	apex1	97	78.397	Amphilophus_citrinellus
ENSGMOG00000007943	apex1	99	76.774	ENSAOCG00000009649	apex1	100	76.774	Amphiprion_ocellaris
ENSGMOG00000007943	apex1	99	77.097	ENSAPEG00000021453	apex1	100	77.097	Amphiprion_percula
ENSGMOG00000007943	apex1	99	77.994	ENSATEG00000002883	apex1	97	77.994	Anabas_testudineus
ENSGMOG00000007943	apex1	90	67.857	ENSACAG00000008099	APEX1	99	65.714	Anolis_carolinensis
ENSGMOG00000007943	apex1	99	61.442	ENSANAG00000030117	APEX1	99	61.950	Aotus_nancymaae
ENSGMOG00000007943	apex1	88	79.636	ENSACLG00000018441	apex1	100	77.492	Astatotilapia_calliptera
ENSGMOG00000007943	apex1	98	78.065	ENSAMXG00000034699	apex1	99	78.065	Astyanax_mexicanus
ENSGMOG00000007943	apex1	99	61.076	ENSBTAG00000002745	APEX1	99	61.129	Bos_taurus
ENSGMOG00000007943	apex1	84	46.388	WBGene00001372	exo-3	90	46.388	Caenorhabditis_elegans
ENSGMOG00000007943	apex1	99	61.442	ENSCJAG00000009726	APEX1	99	61.950	Callithrix_jacchus
ENSGMOG00000007943	apex1	99	62.975	ENSCAFG00000032033	APEX1	99	62.975	Canis_familiaris
ENSGMOG00000007943	apex1	53	57.647	ENSCAFG00020023002	-	94	57.647	Canis_lupus_dingo
ENSGMOG00000007943	apex1	99	62.975	ENSCAFG00020014377	-	99	62.975	Canis_lupus_dingo
ENSGMOG00000007943	apex1	99	61.076	ENSCHIG00000007298	-	99	61.129	Capra_hircus
ENSGMOG00000007943	apex1	85	52.060	ENSCHIG00000014537	-	99	47.403	Capra_hircus
ENSGMOG00000007943	apex1	99	61.006	ENSTSYG00000034813	APEX1	99	61.006	Carlito_syrichta
ENSGMOG00000007943	apex1	82	62.934	ENSCAPG00000016235	APEX1	91	66.525	Cavia_aperea
ENSGMOG00000007943	apex1	99	61.950	ENSCPOG00000030909	APEX1	99	61.950	Cavia_porcellus
ENSGMOG00000007943	apex1	99	54.088	ENSCCAG00000031931	-	99	54.088	Cebus_capucinus
ENSGMOG00000007943	apex1	99	61.442	ENSCCAG00000033056	-	99	61.950	Cebus_capucinus
ENSGMOG00000007943	apex1	99	62.579	ENSCATG00000015580	APEX1	99	62.579	Cercocebus_atys
ENSGMOG00000007943	apex1	99	61.006	ENSCLAG00000001002	APEX1	99	61.006	Chinchilla_lanigera
ENSGMOG00000007943	apex1	99	62.579	ENSCSAG00000016670	-	99	62.579	Chlorocebus_sabaeus
ENSGMOG00000007943	apex1	99	62.579	ENSCSAG00000016685	-	99	62.579	Chlorocebus_sabaeus
ENSGMOG00000007943	apex1	99	67.296	ENSCPBG00000009567	APEX1	99	68.038	Chrysemys_picta_bellii
ENSGMOG00000007943	apex1	84	57.471	ENSCING00000008137	-	83	57.471	Ciona_intestinalis
ENSGMOG00000007943	apex1	84	50.958	ENSCSAVG00000007144	-	100	50.973	Ciona_savignyi
ENSGMOG00000007943	apex1	99	62.264	ENSCANG00000030726	APEX1	99	62.264	Colobus_angolensis_palliatus
ENSGMOG00000007943	apex1	99	61.270	ENSCGRG00001017046	Apex1	99	61.270	Cricetulus_griseus_chok1gshd
ENSGMOG00000007943	apex1	99	61.270	ENSCGRG00000008984	Apex1	99	61.270	Cricetulus_griseus_crigri
ENSGMOG00000007943	apex1	99	75.806	ENSCSEG00000017499	apex1	99	75.806	Cynoglossus_semilaevis
ENSGMOG00000007943	apex1	99	76.452	ENSCVAG00000022075	apex1	100	76.452	Cyprinodon_variegatus
ENSGMOG00000007943	apex1	99	77.346	ENSDARG00000045843	apex1	99	77.097	Danio_rerio
ENSGMOG00000007943	apex1	99	58.228	ENSDNOG00000042234	APEX1	94	58.544	Dasypus_novemcinctus
ENSGMOG00000007943	apex1	99	61.076	ENSDORG00000001616	Apex1	99	61.076	Dipodomys_ordii
ENSGMOG00000007943	apex1	99	61.076	ENSETEG00000004855	-	99	61.321	Echinops_telfairi
ENSGMOG00000007943	apex1	76	57.384	ENSEBUG00000000622	-	92	57.384	Eptatretus_burgeri
ENSGMOG00000007943	apex1	99	62.025	ENSEASG00005017489	APEX1	73	62.025	Equus_asinus_asinus
ENSGMOG00000007943	apex1	99	62.025	ENSECAG00000022325	APEX1	81	62.025	Equus_caballus
ENSGMOG00000007943	apex1	86	64.684	ENSEEUG00000012569	APEX1	97	63.669	Erinaceus_europaeus
ENSGMOG00000007943	apex1	99	78.457	ENSELUG00000021706	apex1	99	80.386	Esox_lucius
ENSGMOG00000007943	apex1	99	61.950	ENSFCAG00000030869	APEX1	99	61.950	Felis_catus
ENSGMOG00000007943	apex1	99	61.950	ENSFDAG00000006120	APEX1	99	61.950	Fukomys_damarensis
ENSGMOG00000007943	apex1	99	76.774	ENSFHEG00000009031	apex1	83	76.774	Fundulus_heteroclitus
ENSGMOG00000007943	apex1	99	76.774	ENSGAFG00000005311	apex1	100	76.774	Gambusia_affinis
ENSGMOG00000007943	apex1	99	76.774	ENSGACG00000019497	apex1	99	79.623	Gasterosteus_aculeatus
ENSGMOG00000007943	apex1	99	67.296	ENSGAGG00000014999	APEX1	99	68.038	Gopherus_agassizii
ENSGMOG00000007943	apex1	99	61.129	ENSGGOG00000002128	APEX1	99	61.321	Gorilla_gorilla
ENSGMOG00000007943	apex1	99	75.563	ENSHBUG00000005894	apex1	100	77.814	Haplochromis_burtoni
ENSGMOG00000007943	apex1	99	61.950	ENSHGLG00000002848	APEX1	99	61.950	Heterocephalus_glaber_female
ENSGMOG00000007943	apex1	99	61.950	ENSHGLG00100017878	APEX1	99	61.950	Heterocephalus_glaber_male
ENSGMOG00000007943	apex1	99	77.814	ENSHCOG00000009961	apex1	100	77.814	Hippocampus_comes
ENSGMOG00000007943	apex1	99	75.405	ENSIPUG00000005799	apex1	99	75.405	Ictalurus_punctatus
ENSGMOG00000007943	apex1	99	62.025	ENSSTOG00000010096	APEX1	99	62.025	Ictidomys_tridecemlineatus
ENSGMOG00000007943	apex1	99	59.937	ENSJJAG00000012067	-	99	59.937	Jaculus_jaculus
ENSGMOG00000007943	apex1	99	53.481	ENSJJAG00000003660	-	99	53.481	Jaculus_jaculus
ENSGMOG00000007943	apex1	89	56.631	ENSJJAG00000020465	-	93	55.903	Jaculus_jaculus
ENSGMOG00000007943	apex1	99	75.484	ENSKMAG00000021171	apex1	100	75.484	Kryptolebias_marmoratus
ENSGMOG00000007943	apex1	99	78.710	ENSLBEG00000010248	apex1	100	78.710	Labrus_bergylta
ENSGMOG00000007943	apex1	99	67.949	ENSLACG00000008617	APEX1	99	67.949	Latimeria_chalumnae
ENSGMOG00000007943	apex1	99	73.333	ENSLOCG00000015516	apex1	99	73.333	Lepisosteus_oculatus
ENSGMOG00000007943	apex1	99	62.342	ENSLAFG00000021872	APEX1	99	62.658	Loxodonta_africana
ENSGMOG00000007943	apex1	99	62.579	ENSMFAG00000002565	APEX1	99	62.579	Macaca_fascicularis
ENSGMOG00000007943	apex1	99	62.579	ENSMMUG00000048039	APEX1	99	62.579	Macaca_mulatta
ENSGMOG00000007943	apex1	99	62.579	ENSMNEG00000036944	APEX1	99	62.579	Macaca_nemestrina
ENSGMOG00000007943	apex1	99	62.579	ENSMLEG00000042125	APEX1	99	62.579	Mandrillus_leucophaeus
ENSGMOG00000007943	apex1	99	75.484	ENSMAMG00000023526	apex1	100	75.484	Mastacembelus_armatus
ENSGMOG00000007943	apex1	88	79.636	ENSMZEG00005014187	apex1	100	77.492	Maylandia_zebra
ENSGMOG00000007943	apex1	99	61.465	ENSMAUG00000013994	Apex1	99	61.465	Mesocricetus_auratus
ENSGMOG00000007943	apex1	99	61.129	ENSMICG00000043554	APEX1	99	61.129	Microcebus_murinus
ENSGMOG00000007943	apex1	99	61.270	ENSMOCG00000013721	Apex1	99	61.270	Microtus_ochrogaster
ENSGMOG00000007943	apex1	99	76.206	ENSMMOG00000010031	apex1	97	76.206	Mola_mola
ENSGMOG00000007943	apex1	88	65.818	ENSMODG00000007125	APEX1	99	61.635	Monodelphis_domestica
ENSGMOG00000007943	apex1	90	72.143	ENSMALG00000011699	apex1	79	70.648	Monopterus_albus
ENSGMOG00000007943	apex1	99	62.420	MGP_CAROLIEiJ_G0019209	Apex1	99	62.420	Mus_caroli
ENSGMOG00000007943	apex1	99	62.222	ENSMUSG00000035960	Apex1	99	62.222	Mus_musculus
ENSGMOG00000007943	apex1	99	60.952	MGP_PahariEiJ_G0030232	Apex1	99	62.540	Mus_pahari
ENSGMOG00000007943	apex1	99	62.222	MGP_SPRETEiJ_G0020101	Apex1	99	62.222	Mus_spretus
ENSGMOG00000007943	apex1	99	60.063	ENSMLUG00000028957	APEX1	99	60.063	Myotis_lucifugus
ENSGMOG00000007943	apex1	87	51.087	ENSNGAG00000021748	-	85	51.087	Nannospalax_galili
ENSGMOG00000007943	apex1	99	61.321	ENSNGAG00000002725	-	99	61.321	Nannospalax_galili
ENSGMOG00000007943	apex1	88	80.000	ENSNBRG00000005334	apex1	91	77.814	Neolamprologus_brichardi
ENSGMOG00000007943	apex1	99	61.859	ENSNLEG00000010839	APEX1	99	62.058	Nomascus_leucogenys
ENSGMOG00000007943	apex1	99	62.420	ENSMEUG00000014519	APEX1	99	62.420	Notamacropus_eugenii
ENSGMOG00000007943	apex1	99	61.905	ENSOPRG00000014029	APEX1	99	61.905	Ochotona_princeps
ENSGMOG00000007943	apex1	81	53.175	ENSODEG00000004777	-	83	53.175	Octodon_degus
ENSGMOG00000007943	apex1	99	48.910	ENSODEG00000006583	-	99	48.910	Octodon_degus
ENSGMOG00000007943	apex1	99	61.950	ENSODEG00000001703	-	99	61.950	Octodon_degus
ENSGMOG00000007943	apex1	89	80.072	ENSONIG00000012089	apex1	100	77.814	Oreochromis_niloticus
ENSGMOG00000007943	apex1	88	66.182	ENSOANG00000008836	APEX1	80	62.422	Ornithorhynchus_anatinus
ENSGMOG00000007943	apex1	99	62.658	ENSOCUG00000005022	APEX1	99	62.975	Oryctolagus_cuniculus
ENSGMOG00000007943	apex1	99	78.778	ENSORLG00000012378	apex1	100	78.778	Oryzias_latipes
ENSGMOG00000007943	apex1	99	78.778	ENSORLG00020021371	apex1	100	78.778	Oryzias_latipes_hni
ENSGMOG00000007943	apex1	99	78.778	ENSORLG00015020089	apex1	100	78.778	Oryzias_latipes_hsok
ENSGMOG00000007943	apex1	99	78.135	ENSOMEG00000018876	apex1	100	78.135	Oryzias_melastigma
ENSGMOG00000007943	apex1	99	61.514	ENSOGAG00000013335	-	99	61.514	Otolemur_garnettii
ENSGMOG00000007943	apex1	89	57.348	ENSOGAG00000029355	-	97	55.116	Otolemur_garnettii
ENSGMOG00000007943	apex1	94	52.508	ENSOARG00000014424	-	96	52.508	Ovis_aries
ENSGMOG00000007943	apex1	96	58.170	ENSOARG00000001876	-	99	58.252	Ovis_aries
ENSGMOG00000007943	apex1	99	61.392	ENSOARG00000019740	-	99	61.442	Ovis_aries
ENSGMOG00000007943	apex1	99	61.538	ENSPPAG00000038760	APEX1	99	61.736	Pan_paniscus
ENSGMOG00000007943	apex1	99	61.709	ENSPPRG00000011794	APEX1	99	61.321	Panthera_pardus
ENSGMOG00000007943	apex1	99	61.950	ENSPTIG00000014829	APEX1	99	61.950	Panthera_tigris_altaica
ENSGMOG00000007943	apex1	99	61.538	ENSPTRG00000006093	APEX1	99	61.736	Pan_troglodytes
ENSGMOG00000007943	apex1	99	62.579	ENSPANG00000022757	APEX1	99	62.579	Papio_anubis
ENSGMOG00000007943	apex1	89	80.797	ENSPKIG00000003504	apex1	99	78.526	Paramormyrops_kingsleyae
ENSGMOG00000007943	apex1	78	73.279	ENSPMGG00000016596	apex1	74	73.279	Periophthalmus_magnuspinnatus
ENSGMOG00000007943	apex1	99	60.952	ENSPEMG00000019097	Apex1	99	60.952	Peromyscus_maniculatus_bairdii
ENSGMOG00000007943	apex1	94	68.367	ENSPMAG00000007275	-	99	68.367	Petromyzon_marinus
ENSGMOG00000007943	apex1	88	66.058	ENSPCIG00000023274	APEX1	99	61.830	Phascolarctos_cinereus
ENSGMOG00000007943	apex1	99	76.774	ENSPFOG00000004178	apex1	100	76.774	Poecilia_formosa
ENSGMOG00000007943	apex1	99	76.452	ENSPLAG00000012779	apex1	100	76.452	Poecilia_latipinna
ENSGMOG00000007943	apex1	99	76.774	ENSPMEG00000019623	apex1	100	76.774	Poecilia_mexicana
ENSGMOG00000007943	apex1	99	75.806	ENSPREG00000014298	apex1	99	75.806	Poecilia_reticulata
ENSGMOG00000007943	apex1	99	61.129	ENSPPYG00000005565	APEX1	99	61.635	Pongo_abelii
ENSGMOG00000007943	apex1	99	60.759	ENSPCAG00000010376	APEX1	99	60.759	Procavia_capensis
ENSGMOG00000007943	apex1	99	61.442	ENSPCOG00000021564	APEX1	99	61.442	Propithecus_coquereli
ENSGMOG00000007943	apex1	99	61.006	ENSPVAG00000010736	APEX1	99	61.006	Pteropus_vampyrus
ENSGMOG00000007943	apex1	88	80.000	ENSPNYG00000023940	apex1	100	77.814	Pundamilia_nyererei
ENSGMOG00000007943	apex1	92	77.622	ENSPNAG00000020897	apex1	96	77.544	Pygocentrus_nattereri
ENSGMOG00000007943	apex1	99	61.905	ENSRNOG00000009663	Apex1	99	61.905	Rattus_norvegicus
ENSGMOG00000007943	apex1	99	62.264	ENSRBIG00000038325	APEX1	98	62.264	Rhinopithecus_bieti
ENSGMOG00000007943	apex1	99	54.839	ENSSBOG00000031372	-	99	54.839	Saimiri_boliviensis_boliviensis
ENSGMOG00000007943	apex1	99	61.442	ENSSBOG00000018921	-	99	61.950	Saimiri_boliviensis_boliviensis
ENSGMOG00000007943	apex1	99	58.359	ENSSHAG00000013524	APEX1	99	60.870	Sarcophilus_harrisii
ENSGMOG00000007943	apex1	99	74.277	ENSSFOG00015001948	apex1	99	75.241	Scleropages_formosus
ENSGMOG00000007943	apex1	99	77.460	ENSSMAG00000013348	apex1	100	78.413	Scophthalmus_maximus
ENSGMOG00000007943	apex1	99	75.484	ENSSDUG00000016377	apex1	99	75.484	Seriola_dumerili
ENSGMOG00000007943	apex1	99	76.452	ENSSLDG00000023005	apex1	100	76.452	Seriola_lalandi_dorsalis
ENSGMOG00000007943	apex1	92	68.259	ENSSPUG00000000531	APEX1	99	68.259	Sphenodon_punctatus
ENSGMOG00000007943	apex1	99	76.452	ENSSPAG00000000458	apex1	100	76.452	Stegastes_partitus
ENSGMOG00000007943	apex1	99	62.025	ENSSSCG00000040060	-	99	62.264	Sus_scrofa
ENSGMOG00000007943	apex1	78	41.036	ENSSSCG00000039705	-	83	41.036	Sus_scrofa
ENSGMOG00000007943	apex1	75	55.319	ENSTGUG00000014378	APEX1	100	55.319	Taeniopygia_guttata
ENSGMOG00000007943	apex1	89	79.348	ENSTRUG00000004268	apex1	95	76.997	Takifugu_rubripes
ENSGMOG00000007943	apex1	99	76.603	ENSTNIG00000005778	apex1	100	76.603	Tetraodon_nigroviridis
ENSGMOG00000007943	apex1	99	58.861	ENSTBEG00000006405	APEX1	99	58.621	Tupaia_belangeri
ENSGMOG00000007943	apex1	75	65.106	ENSTTRG00000007860	APEX1	100	65.106	Tursiops_truncatus
ENSGMOG00000007943	apex1	99	62.264	ENSUAMG00000010457	APEX1	99	62.264	Ursus_americanus
ENSGMOG00000007943	apex1	99	62.264	ENSUMAG00000009178	APEX1	99	62.264	Ursus_maritimus
ENSGMOG00000007943	apex1	75	61.702	ENSVPAG00000005083	APEX1	100	61.702	Vicugna_pacos
ENSGMOG00000007943	apex1	99	62.658	ENSVVUG00000009010	APEX1	99	62.658	Vulpes_vulpes
ENSGMOG00000007943	apex1	99	63.057	ENSXETG00000024773	apex1	99	64.331	Xenopus_tropicalis
ENSGMOG00000007943	apex1	99	76.129	ENSXCOG00000015233	apex1	99	76.129	Xiphophorus_couchianus
ENSGMOG00000007943	apex1	99	76.129	ENSXMAG00000006195	apex1	100	76.129	Xiphophorus_maculatus