EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGMOG00000010034 (Gene tree)
Gene ID: -
Gene Symbol: smarcal1
Alias: im:7145331|si:ch211-239d11.1
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a-like 1
Gene Type: protein_coding
Species: Gadus_morhua
Status: putative
Strand: Minus strand
Length: 18478 bases
Position: chrGeneScaffold_1319:33333-51810
Accession: ZDB-GENE-041210-303
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGMOP00000010728	ResIII	PF04851.15	3.9e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGMOT00000011026	-	1476	-	ENSGMOP00000010728	492 (aa)	-	UPI00023F1CF5

Gene Model

Click here to download ENSGMOG00000010034's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGMOG00000010034's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGMOG00000010034	smarcal1	92	55.634	ENSG00000138375	SMARCAL1	99	64.375	Homo_sapiens
ENSGMOG00000010034	smarcal1	95	75.414	ENSAPOG00000020156	SMARCAL1	58	75.414	Acanthochromis_polyacanthus
ENSGMOG00000010034	smarcal1	100	74.941	ENSACIG00000001500	smarcal1	76	74.941	Amphilophus_citrinellus
ENSGMOG00000010034	smarcal1	93	75.414	ENSAOCG00000014266	SMARCAL1	61	75.414	Amphiprion_ocellaris
ENSGMOG00000010034	smarcal1	97	75.414	ENSAPEG00000015861	SMARCAL1	59	81.034	Amphiprion_percula
ENSGMOG00000010034	smarcal1	95	77.069	ENSATEG00000020624	SMARCAL1	55	77.069	Anabas_testudineus
ENSGMOG00000010034	smarcal1	95	63.981	ENSAPLG00000009864	SMARCAL1	51	63.981	Anas_platyrhynchos
ENSGMOG00000010034	smarcal1	87	75.177	ENSACLG00000015990	SMARCAL1	61	75.177	Astatotilapia_calliptera
ENSGMOG00000010034	smarcal1	97	71.395	ENSAMXG00000003350	smarcal1	56	71.395	Astyanax_mexicanus
ENSGMOG00000010034	smarcal1	90	69.231	ENSCPBG00000013599	SMARCAL1	50	65.152	Chrysemys_picta_bellii
ENSGMOG00000010034	smarcal1	91	47.170	ENSCING00000009308	-	75	49.169	Ciona_intestinalis
ENSGMOG00000010034	smarcal1	93	75.000	ENSCSEG00000010785	SMARCAL1	60	75.000	Cynoglossus_semilaevis
ENSGMOG00000010034	smarcal1	90	73.050	ENSCVAG00000018780	SMARCAL1	58	73.050	Cyprinodon_variegatus
ENSGMOG00000010034	smarcal1	92	57.456	ENSEBUG00000011906	SMARCAL1	68	60.284	Eptatretus_burgeri
ENSGMOG00000010034	smarcal1	86	62.796	ENSFALG00000003981	SMARCAL1	51	62.796	Ficedula_albicollis
ENSGMOG00000010034	smarcal1	90	72.813	ENSFHEG00000008380	SMARCAL1	64	72.813	Fundulus_heteroclitus
ENSGMOG00000010034	smarcal1	86	63.033	ENSGALG00000011475	RPL37A	51	63.033	Gallus_gallus
ENSGMOG00000010034	smarcal1	100	69.923	ENSGACG00000006073	SMARCAL1	82	69.923	Gasterosteus_aculeatus
ENSGMOG00000010034	smarcal1	90	63.514	ENSGAGG00000015660	SMARCAL1	54	64.220	Gopherus_agassizii
ENSGMOG00000010034	smarcal1	93	75.414	ENSHBUG00000002973	smarcal1	61	75.414	Haplochromis_burtoni
ENSGMOG00000010034	smarcal1	95	74.232	ENSHCOG00000017921	smarcal1	62	74.232	Hippocampus_comes
ENSGMOG00000010034	smarcal1	86	73.759	ENSKMAG00000012023	SMARCAL1	66	73.759	Kryptolebias_marmoratus
ENSGMOG00000010034	smarcal1	93	74.941	ENSLBEG00000003493	smarcal1	64	74.941	Labrus_bergylta
ENSGMOG00000010034	smarcal1	99	74.941	ENSLBEG00000022915	smarcal1	78	74.941	Labrus_bergylta
ENSGMOG00000010034	smarcal1	86	66.667	ENSLACG00000010974	SMARCAL1	51	66.667	Latimeria_chalumnae
ENSGMOG00000010034	smarcal1	86	71.395	ENSLOCG00000009637	smarcal1	59	71.395	Lepisosteus_oculatus
ENSGMOG00000010034	smarcal1	94	69.851	ENSMAMG00000000828	SMARCAL1	62	75.650	Mastacembelus_armatus
ENSGMOG00000010034	smarcal1	87	75.177	ENSMZEG00005007660	SMARCAL1	61	75.177	Maylandia_zebra
ENSGMOG00000010034	smarcal1	86	63.507	ENSMGAG00000011658	SMARCAL1	52	63.507	Meleagris_gallopavo
ENSGMOG00000010034	smarcal1	100	65.042	ENSMMOG00000003842	smarcal1	74	70.449	Mola_mola
ENSGMOG00000010034	smarcal1	88	61.502	ENSMODG00000015544	SMARCAL1	54	61.502	Monodelphis_domestica
ENSGMOG00000010034	smarcal1	100	74.704	ENSNBRG00000016273	smarcal1	77	74.704	Neolamprologus_brichardi
ENSGMOG00000010034	smarcal1	95	61.253	ENSMEUG00000004395	SMARCAL1	60	61.253	Notamacropus_eugenii
ENSGMOG00000010034	smarcal1	87	75.414	ENSONIG00000009036	smarcal1	72	76.019	Oreochromis_niloticus
ENSGMOG00000010034	smarcal1	91	73.522	ENSORLG00000016455	SMARCAL1	61	73.522	Oryzias_latipes
ENSGMOG00000010034	smarcal1	91	73.759	ENSORLG00020001610	SMARCAL1	61	73.759	Oryzias_latipes_hni
ENSGMOG00000010034	smarcal1	91	73.759	ENSORLG00015001865	SMARCAL1	61	73.759	Oryzias_latipes_hsok
ENSGMOG00000010034	smarcal1	93	73.286	ENSOMEG00000001845	smarcal1	63	73.286	Oryzias_melastigma
ENSGMOG00000010034	smarcal1	93	71.831	ENSPMGG00000019092	SMARCAL1	60	71.831	Periophthalmus_magnuspinnatus
ENSGMOG00000010034	smarcal1	90	59.598	ENSPCIG00000022514	SMARCAL1	56	61.972	Phascolarctos_cinereus
ENSGMOG00000010034	smarcal1	90	72.066	ENSPFOG00000000560	SMARCAL1	59	72.066	Poecilia_formosa
ENSGMOG00000010034	smarcal1	90	72.066	ENSPMEG00000018146	SMARCAL1	59	72.066	Poecilia_mexicana
ENSGMOG00000010034	smarcal1	62	77.705	ENSPREG00000009591	SMARCAL1	55	77.705	Poecilia_reticulata
ENSGMOG00000010034	smarcal1	95	70.686	ENSPNAG00000014900	smarcal1	55	70.686	Pygocentrus_nattereri
ENSGMOG00000010034	smarcal1	94	54.889	ENSSHAG00000013538	SMARCAL1	56	56.492	Sarcophilus_harrisii
ENSGMOG00000010034	smarcal1	93	74.704	ENSSMAG00000010427	SMARCAL1	59	74.704	Scophthalmus_maximus
ENSGMOG00000010034	smarcal1	95	75.414	ENSSDUG00000017470	SMARCAL1	60	75.414	Seriola_dumerili
ENSGMOG00000010034	smarcal1	95	75.177	ENSSLDG00000007224	SMARCAL1	61	75.177	Seriola_lalandi_dorsalis
ENSGMOG00000010034	smarcal1	100	74.941	ENSSPAG00000003742	smarcal1	78	74.941	Stegastes_partitus
ENSGMOG00000010034	smarcal1	86	63.636	ENSSSCG00000035501	SMARCAL1	52	63.636	Sus_scrofa
ENSGMOG00000010034	smarcal1	85	62.350	ENSTGUG00000005079	SMARCAL1	73	62.500	Taeniopygia_guttata
ENSGMOG00000010034	smarcal1	93	64.271	ENSTRUG00000010701	SMARCAL1	61	65.768	Takifugu_rubripes
ENSGMOG00000010034	smarcal1	91	63.070	ENSTTRG00000009001	SMARCAL1	52	63.070	Tursiops_truncatus
ENSGMOG00000010034	smarcal1	92	65.640	ENSXETG00000000465	smarcal1	53	65.640	Xenopus_tropicalis