EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGMOG00000010508 (Gene tree)
Gene ID: -
Gene Symbol: zgc:171482
Alias: -
Full Name: zgc:171482
Gene Type: protein_coding
Species: Gadus_morhua
Status: putative
Strand: Plus strand
Length: 24081 bases
Position: chrGeneScaffold_1559:32641-56721
Accession: ZDB-GENE-080204-84
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGMOP00000011248	zf-met	PF12874.7	1.4e-27	1	4
ENSGMOP00000011248	zf-met	PF12874.7	1.4e-27	2	4
ENSGMOP00000011248	zf-met	PF12874.7	1.4e-27	3	4
ENSGMOP00000011248	zf-met	PF12874.7	1.4e-27	4	4
ENSGMOP00000011248	zf-C2H2_jaz	PF12171.8	6.6e-21	1	2
ENSGMOP00000011248	zf-C2H2_jaz	PF12171.8	6.6e-21	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGMOT00000011550	-	669	-	ENSGMOP00000011248	222 (aa)	-	UPI00023F214C

Gene Model

Click here to download ENSGMOG00000010508's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGMOG00000010508's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGMOG00000010508	zgc:171482	99	64.732	ENSGMOG00000007950	zmat4a	100	64.732
ENSGMOG00000010508	zgc:171482	80	39.252	ENSGMOG00000008558	zmat3	60	39.252
ENSGMOG00000010508	zgc:171482	96	44.595	ENSGMOG00000015384	znf346	88	45.909

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGMOG00000010508	zgc:171482	100	89.189	ENSAPOG00000019970	zgc:171482	100	89.189	Acanthochromis_polyacanthus
ENSGMOG00000010508	zgc:171482	79	95.726	ENSACIG00000021512	zgc:171482	87	95.726	Amphilophus_citrinellus
ENSGMOG00000010508	zgc:171482	79	94.355	ENSAOCG00000000751	zgc:171482	91	94.355	Amphiprion_ocellaris
ENSGMOG00000010508	zgc:171482	79	94.355	ENSAPEG00000014154	zgc:171482	89	94.355	Amphiprion_percula
ENSGMOG00000010508	zgc:171482	100	84.821	ENSATEG00000001371	zgc:171482	100	85.714	Anabas_testudineus
ENSGMOG00000010508	zgc:171482	79	92.800	ENSACLG00000010511	zgc:171482	87	92.800	Astatotilapia_calliptera
ENSGMOG00000010508	zgc:171482	100	83.333	ENSAMXG00000002299	zgc:171482	93	90.756	Astyanax_mexicanus
ENSGMOG00000010508	zgc:171482	100	70.659	ENSCSEG00000006509	zgc:171482	100	70.659	Cynoglossus_semilaevis
ENSGMOG00000010508	zgc:171482	100	85.903	ENSCVAG00000013606	zgc:171482	100	85.903	Cyprinodon_variegatus
ENSGMOG00000010508	zgc:171482	99	83.628	ENSDARG00000074415	zgc:171482	91	90.164	Danio_rerio
ENSGMOG00000010508	zgc:171482	81	66.667	ENSELUG00000017517	-	60	83.333	Esox_lucius
ENSGMOG00000010508	zgc:171482	79	94.262	ENSELUG00000021817	zgc:171482	90	93.600	Esox_lucius
ENSGMOG00000010508	zgc:171482	100	84.141	ENSFHEG00000002233	zgc:171482	100	84.141	Fundulus_heteroclitus
ENSGMOG00000010508	zgc:171482	100	95.763	ENSGAFG00000009398	zgc:171482	100	71.856	Gambusia_affinis
ENSGMOG00000010508	zgc:171482	100	86.638	ENSGACG00000007680	zgc:171482	100	86.638	Gasterosteus_aculeatus
ENSGMOG00000010508	zgc:171482	79	92.800	ENSHBUG00000023289	zgc:171482	94	92.800	Haplochromis_burtoni
ENSGMOG00000010508	zgc:171482	79	88.889	ENSHCOG00000018086	zgc:171482	94	88.889	Hippocampus_comes
ENSGMOG00000010508	zgc:171482	79	92.437	ENSIPUG00000000361	zgc:171482	86	92.437	Ictalurus_punctatus
ENSGMOG00000010508	zgc:171482	100	86.036	ENSKMAG00000005077	zgc:171482	86	86.036	Kryptolebias_marmoratus
ENSGMOG00000010508	zgc:171482	79	92.800	ENSLBEG00000023823	zgc:171482	89	92.800	Labrus_bergylta
ENSGMOG00000010508	zgc:171482	100	81.498	ENSLOCG00000008863	zgc:171482	97	82.379	Lepisosteus_oculatus
ENSGMOG00000010508	zgc:171482	99	92.800	ENSMAMG00000001031	zgc:171482	79	92.800	Mastacembelus_armatus
ENSGMOG00000010508	zgc:171482	100	84.071	ENSMZEG00005027721	zgc:171482	100	84.071	Maylandia_zebra
ENSGMOG00000010508	zgc:171482	79	94.400	ENSMMOG00000010523	zgc:171482	95	94.400	Mola_mola
ENSGMOG00000010508	zgc:171482	100	85.590	ENSMALG00000017883	zgc:171482	100	86.463	Monopterus_albus
ENSGMOG00000010508	zgc:171482	79	95.690	ENSNBRG00000021035	zgc:171482	87	95.690	Neolamprologus_brichardi
ENSGMOG00000010508	zgc:171482	99	87.611	ENSONIG00000018365	zgc:171482	98	87.611	Oreochromis_niloticus
ENSGMOG00000010508	zgc:171482	100	85.903	ENSORLG00000007607	zgc:171482	100	85.903	Oryzias_latipes
ENSGMOG00000010508	zgc:171482	100	83.406	ENSORLG00020003563	zgc:171482	100	83.406	Oryzias_latipes_hni
ENSGMOG00000010508	zgc:171482	100	85.903	ENSORLG00015008552	zgc:171482	100	85.903	Oryzias_latipes_hsok
ENSGMOG00000010508	zgc:171482	79	95.200	ENSOMEG00000003526	zgc:171482	88	95.200	Oryzias_melastigma
ENSGMOG00000010508	zgc:171482	79	89.091	ENSPKIG00000016244	zgc:171482	85	84.426	Paramormyrops_kingsleyae
ENSGMOG00000010508	zgc:171482	79	94.118	ENSPKIG00000015911	-	83	94.118	Paramormyrops_kingsleyae
ENSGMOG00000010508	zgc:171482	99	81.405	ENSPMGG00000020230	zgc:171482	100	81.405	Periophthalmus_magnuspinnatus
ENSGMOG00000010508	zgc:171482	99	84.100	ENSPFOG00000001974	zgc:171482	96	84.100	Poecilia_formosa
ENSGMOG00000010508	zgc:171482	100	90.991	ENSPLAG00000003327	zgc:171482	100	90.991	Poecilia_latipinna
ENSGMOG00000010508	zgc:171482	99	95.200	ENSPMEG00000004988	zgc:171482	100	85.586	Poecilia_mexicana
ENSGMOG00000010508	zgc:171482	79	95.200	ENSPREG00000019241	zgc:171482	91	95.200	Poecilia_reticulata
ENSGMOG00000010508	zgc:171482	79	92.800	ENSPNYG00000007773	zgc:171482	87	92.800	Pundamilia_nyererei
ENSGMOG00000010508	zgc:171482	99	82.096	ENSPNAG00000007619	zgc:171482	97	83.406	Pygocentrus_nattereri
ENSGMOG00000010508	zgc:171482	79	88.235	ENSSFOG00015021238	zgc:171482	80	88.235	Scleropages_formosus
ENSGMOG00000010508	zgc:171482	79	87.931	ENSSFOG00015016149	zgc:171482	93	87.931	Scleropages_formosus
ENSGMOG00000010508	zgc:171482	79	94.400	ENSSMAG00000002715	zgc:171482	80	94.400	Scophthalmus_maximus
ENSGMOG00000010508	zgc:171482	79	94.400	ENSSDUG00000008773	zgc:171482	88	94.400	Seriola_dumerili
ENSGMOG00000010508	zgc:171482	79	94.400	ENSSLDG00000019510	zgc:171482	88	94.400	Seriola_lalandi_dorsalis
ENSGMOG00000010508	zgc:171482	79	94.355	ENSSPAG00000013724	zgc:171482	98	94.355	Stegastes_partitus
ENSGMOG00000010508	zgc:171482	86	94.068	ENSTRUG00000005705	zgc:171482	75	94.068	Takifugu_rubripes
ENSGMOG00000010508	zgc:171482	100	75.000	ENSTNIG00000008679	zgc:171482	100	75.000	Tetraodon_nigroviridis
ENSGMOG00000010508	zgc:171482	84	58.451	ENSXETG00000013525	zmat4	84	60.606	Xenopus_tropicalis
ENSGMOG00000010508	zgc:171482	100	84.746	ENSXMAG00000002641	zgc:171482	100	64.072	Xiphophorus_maculatus