EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGMOG00000011391 (Gene tree)
Gene ID: -
Gene Symbol: srp54
Alias: zgc:55842|zgc:85713
Full Name: signal recognition particle 54
Gene Type: protein_coding
Species: Gadus_morhua
Status: putative
Strand: Minus strand
Length: 9984 bases
Position: chrGeneScaffold_973:2754-12737
Accession: ZDB-GENE-040426-818
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGMOP00000012182	SRP54	PF00448.22	1.3e-62	1	1
ENSGMOP00000012182	SRP54_N	PF02881.19	2.4e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGMOT00000012509	-	1437	-	ENSGMOP00000012182	478 (aa)	-	UPI00023F22A6

Gene Model

Click here to download ENSGMOG00000011391's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGMOG00000011391's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGMOG00000011391	srp54	100	90.167	ENSG00000100883	SRP54	100	89.545	Homo_sapiens
ENSGMOG00000011391	srp54	100	92.678	ENSAPOG00000011314	srp54	95	92.678	Acanthochromis_polyacanthus
ENSGMOG00000011391	srp54	100	90.167	ENSAMEG00000015544	SRP54	95	90.167	Ailuropoda_melanoleuca
ENSGMOG00000011391	srp54	88	90.071	ENSACIG00000022831	srp54	92	90.071	Amphilophus_citrinellus
ENSGMOG00000011391	srp54	100	92.678	ENSAOCG00000019401	srp54	95	92.678	Amphiprion_ocellaris
ENSGMOG00000011391	srp54	100	92.678	ENSAPEG00000001977	srp54	100	92.616	Amphiprion_percula
ENSGMOG00000011391	srp54	100	92.678	ENSATEG00000013877	srp54	95	92.678	Anabas_testudineus
ENSGMOG00000011391	srp54	94	89.062	ENSAPLG00000010125	SRP54	90	89.062	Anas_platyrhynchos
ENSGMOG00000011391	srp54	91	86.406	ENSACAG00000010631	-	100	86.406	Anolis_carolinensis
ENSGMOG00000011391	srp54	68	73.716	ENSACAG00000001124	-	100	73.716	Anolis_carolinensis
ENSGMOG00000011391	srp54	100	89.540	ENSACAG00000002103	-	95	89.540	Anolis_carolinensis
ENSGMOG00000011391	srp54	100	90.167	ENSANAG00000022133	SRP54	95	90.167	Aotus_nancymaae
ENSGMOG00000011391	srp54	100	92.469	ENSACLG00000015866	srp54	95	92.469	Astatotilapia_calliptera
ENSGMOG00000011391	srp54	100	92.259	ENSAMXG00000032669	SRP54	95	92.259	Astyanax_mexicanus
ENSGMOG00000011391	srp54	100	90.167	ENSBTAG00000019085	SRP54	95	90.167	Bos_taurus
ENSGMOG00000011391	srp54	98	68.577	WBGene00009012	F21D5.7	95	68.577	Caenorhabditis_elegans
ENSGMOG00000011391	srp54	100	90.167	ENSCJAG00000006581	SRP54	98	89.509	Callithrix_jacchus
ENSGMOG00000011391	srp54	100	90.167	ENSCAFG00000013331	SRP54	95	90.167	Canis_familiaris
ENSGMOG00000011391	srp54	100	90.167	ENSCAFG00020023427	SRP54	95	90.167	Canis_lupus_dingo
ENSGMOG00000011391	srp54	100	90.167	ENSCHIG00000026345	SRP54	95	90.167	Capra_hircus
ENSGMOG00000011391	srp54	94	77.728	ENSTSYG00000035333	-	88	77.728	Carlito_syrichta
ENSGMOG00000011391	srp54	100	89.958	ENSTSYG00000002680	-	98	89.286	Carlito_syrichta
ENSGMOG00000011391	srp54	94	63.557	ENSCAPG00000008780	SRP54	94	63.557	Cavia_aperea
ENSGMOG00000011391	srp54	100	89.749	ENSCPOG00000003691	SRP54	95	89.749	Cavia_porcellus
ENSGMOG00000011391	srp54	88	89.499	ENSCCAG00000024179	SRP54	100	89.499	Cebus_capucinus
ENSGMOG00000011391	srp54	100	90.167	ENSCATG00000034083	SRP54	98	89.509	Cercocebus_atys
ENSGMOG00000011391	srp54	100	90.167	ENSCLAG00000015076	SRP54	95	90.167	Chinchilla_lanigera
ENSGMOG00000011391	srp54	100	90.167	ENSCSAG00000015575	SRP54	95	90.167	Chlorocebus_sabaeus
ENSGMOG00000011391	srp54	95	84.176	ENSCHOG00000008986	SRP54	95	84.176	Choloepus_hoffmanni
ENSGMOG00000011391	srp54	100	90.167	ENSCPBG00000026195	SRP54	95	90.167	Chrysemys_picta_bellii
ENSGMOG00000011391	srp54	100	76.987	ENSCING00000007380	-	95	76.987	Ciona_intestinalis
ENSGMOG00000011391	srp54	100	90.167	ENSCANG00000028532	SRP54	98	89.509	Colobus_angolensis_palliatus
ENSGMOG00000011391	srp54	100	89.958	ENSCGRG00001009525	-	95	89.958	Cricetulus_griseus_chok1gshd
ENSGMOG00000011391	srp54	75	89.415	ENSCGRG00000009453	-	83	89.415	Cricetulus_griseus_crigri
ENSGMOG00000011391	srp54	100	92.259	ENSCSEG00000012392	srp54	95	92.259	Cynoglossus_semilaevis
ENSGMOG00000011391	srp54	100	92.887	ENSCVAG00000010395	srp54	95	92.887	Cyprinodon_variegatus
ENSGMOG00000011391	srp54	100	93.096	ENSDARG00000098367	srp54	95	93.096	Danio_rerio
ENSGMOG00000011391	srp54	100	90.167	ENSDNOG00000032525	SRP54	95	90.167	Dasypus_novemcinctus
ENSGMOG00000011391	srp54	89	73.239	ENSDORG00000005159	-	92	73.239	Dipodomys_ordii
ENSGMOG00000011391	srp54	96	74.454	FBgn0010747	Srp54k	93	74.098	Drosophila_melanogaster
ENSGMOG00000011391	srp54	100	89.749	ENSETEG00000016307	-	95	89.749	Echinops_telfairi
ENSGMOG00000011391	srp54	87	52.153	ENSETEG00000012102	-	99	52.153	Echinops_telfairi
ENSGMOG00000011391	srp54	100	83.473	ENSEBUG00000009437	-	95	83.473	Eptatretus_burgeri
ENSGMOG00000011391	srp54	100	90.167	ENSEASG00005002057	SRP54	95	90.167	Equus_asinus_asinus
ENSGMOG00000011391	srp54	99	89.831	ENSECAG00000018042	SRP54	93	89.831	Equus_caballus
ENSGMOG00000011391	srp54	78	94.615	ENSEEUG00000001511	SRP54	74	94.615	Erinaceus_europaeus
ENSGMOG00000011391	srp54	100	92.887	ENSELUG00000003395	srp54	95	92.887	Esox_lucius
ENSGMOG00000011391	srp54	100	89.958	ENSFCAG00000032033	SRP54	95	89.958	Felis_catus
ENSGMOG00000011391	srp54	100	89.749	ENSFALG00000005995	SRP54	95	89.749	Ficedula_albicollis
ENSGMOG00000011391	srp54	100	90.167	ENSFDAG00000016767	SRP54	95	90.167	Fukomys_damarensis
ENSGMOG00000011391	srp54	100	92.259	ENSFHEG00000004263	srp54	95	92.259	Fundulus_heteroclitus
ENSGMOG00000011391	srp54	100	89.749	ENSGALG00000023135	SRP54	95	89.749	Gallus_gallus
ENSGMOG00000011391	srp54	100	92.887	ENSGAFG00000011586	srp54	95	92.887	Gambusia_affinis
ENSGMOG00000011391	srp54	100	92.259	ENSGACG00000004181	srp54	95	92.259	Gasterosteus_aculeatus
ENSGMOG00000011391	srp54	100	90.167	ENSGAGG00000014766	SRP54	95	90.167	Gopherus_agassizii
ENSGMOG00000011391	srp54	100	90.167	ENSGGOG00000002926	SRP54	98	89.509	Gorilla_gorilla
ENSGMOG00000011391	srp54	100	92.469	ENSHBUG00000005678	srp54	95	92.469	Haplochromis_burtoni
ENSGMOG00000011391	srp54	100	90.167	ENSHGLG00000002850	SRP54	95	90.167	Heterocephalus_glaber_female
ENSGMOG00000011391	srp54	100	90.167	ENSHGLG00100005263	SRP54	95	90.167	Heterocephalus_glaber_male
ENSGMOG00000011391	srp54	100	62.630	ENSHGLG00100007281	-	94	62.630	Heterocephalus_glaber_male
ENSGMOG00000011391	srp54	100	91.004	ENSHCOG00000021127	srp54	95	91.004	Hippocampus_comes
ENSGMOG00000011391	srp54	100	92.678	ENSIPUG00000001420	srp54	95	92.678	Ictalurus_punctatus
ENSGMOG00000011391	srp54	100	90.167	ENSSTOG00000016023	SRP54	95	90.167	Ictidomys_tridecemlineatus
ENSGMOG00000011391	srp54	100	85.146	ENSJJAG00000013417	-	95	85.146	Jaculus_jaculus
ENSGMOG00000011391	srp54	92	68.409	ENSJJAG00000016404	-	100	68.409	Jaculus_jaculus
ENSGMOG00000011391	srp54	100	92.259	ENSKMAG00000007707	srp54	95	92.259	Kryptolebias_marmoratus
ENSGMOG00000011391	srp54	100	92.678	ENSLBEG00000021122	srp54	95	92.678	Labrus_bergylta
ENSGMOG00000011391	srp54	100	92.678	ENSLBEG00000018690	srp54	95	92.678	Labrus_bergylta
ENSGMOG00000011391	srp54	100	90.586	ENSLACG00000017890	SRP54	95	90.586	Latimeria_chalumnae
ENSGMOG00000011391	srp54	100	92.678	ENSLOCG00000009440	srp54	95	92.678	Lepisosteus_oculatus
ENSGMOG00000011391	srp54	100	90.167	ENSLAFG00000012007	SRP54	95	90.167	Loxodonta_africana
ENSGMOG00000011391	srp54	100	90.167	ENSMFAG00000044371	SRP54	98	89.509	Macaca_fascicularis
ENSGMOG00000011391	srp54	100	90.167	ENSMMUG00000015073	FAM177A1	98	89.509	Macaca_mulatta
ENSGMOG00000011391	srp54	100	90.167	ENSMNEG00000006947	SRP54	98	89.509	Macaca_nemestrina
ENSGMOG00000011391	srp54	100	90.167	ENSMLEG00000042251	SRP54	98	89.509	Mandrillus_leucophaeus
ENSGMOG00000011391	srp54	100	92.469	ENSMAMG00000004803	srp54	95	92.469	Mastacembelus_armatus
ENSGMOG00000011391	srp54	100	92.469	ENSMZEG00005027528	srp54	95	92.469	Maylandia_zebra
ENSGMOG00000011391	srp54	100	85.000	ENSMGAG00000012481	SRP54	95	85.000	Meleagris_gallopavo
ENSGMOG00000011391	srp54	100	90.167	ENSMAUG00000014447	-	95	90.167	Mesocricetus_auratus
ENSGMOG00000011391	srp54	100	90.167	ENSMICG00000010270	SRP54	95	90.167	Microcebus_murinus
ENSGMOG00000011391	srp54	92	89.545	ENSMOCG00000000948	-	100	89.545	Microtus_ochrogaster
ENSGMOG00000011391	srp54	90	89.252	ENSMMOG00000020303	srp54	93	89.252	Mola_mola
ENSGMOG00000011391	srp54	100	90.167	ENSMODG00000023150	-	95	90.167	Monodelphis_domestica
ENSGMOG00000011391	srp54	100	90.167	ENSMODG00000012925	-	95	90.167	Monodelphis_domestica
ENSGMOG00000011391	srp54	87	91.367	ENSMALG00000009163	srp54	92	91.367	Monopterus_albus
ENSGMOG00000011391	srp54	100	90.167	MGP_CAROLIEiJ_G0017754	-	95	90.167	Mus_caroli
ENSGMOG00000011391	srp54	100	89.540	ENSMUSG00000079108	Srp54c	95	89.540	Mus_musculus
ENSGMOG00000011391	srp54	100	90.167	ENSMUSG00000073079	Srp54a	95	90.167	Mus_musculus
ENSGMOG00000011391	srp54	100	90.167	ENSMUSG00000112449	Srp54b	95	90.167	Mus_musculus
ENSGMOG00000011391	srp54	100	90.167	MGP_PahariEiJ_G0029510	-	95	90.167	Mus_pahari
ENSGMOG00000011391	srp54	100	90.167	ENSMPUG00000016302	SRP54	95	90.167	Mustela_putorius_furo
ENSGMOG00000011391	srp54	100	89.540	ENSMLUG00000008958	SRP54	95	89.540	Myotis_lucifugus
ENSGMOG00000011391	srp54	100	85.356	ENSNGAG00000019806	-	94	85.356	Nannospalax_galili
ENSGMOG00000011391	srp54	92	91.818	ENSNBRG00000006000	srp54	100	91.818	Neolamprologus_brichardi
ENSGMOG00000011391	srp54	100	90.167	ENSNLEG00000003496	SRP54	98	89.509	Nomascus_leucogenys
ENSGMOG00000011391	srp54	65	96.667	ENSMEUG00000000138	-	70	96.667	Notamacropus_eugenii
ENSGMOG00000011391	srp54	100	90.167	ENSODEG00000004865	SRP54	95	90.167	Octodon_degus
ENSGMOG00000011391	srp54	100	92.469	ENSONIG00000011768	srp54	95	92.469	Oreochromis_niloticus
ENSGMOG00000011391	srp54	100	90.167	ENSOANG00000014051	SRP54	95	90.167	Ornithorhynchus_anatinus
ENSGMOG00000011391	srp54	100	89.540	ENSOCUG00000007838	SRP54	95	89.540	Oryctolagus_cuniculus
ENSGMOG00000011391	srp54	100	92.259	ENSORLG00000010027	srp54	95	92.259	Oryzias_latipes
ENSGMOG00000011391	srp54	100	92.259	ENSORLG00020001878	srp54	95	92.259	Oryzias_latipes_hni
ENSGMOG00000011391	srp54	100	92.259	ENSORLG00015021866	srp54	95	92.259	Oryzias_latipes_hsok
ENSGMOG00000011391	srp54	100	92.050	ENSOMEG00000020952	srp54	95	92.050	Oryzias_melastigma
ENSGMOG00000011391	srp54	100	90.167	ENSOGAG00000012188	SRP54	95	90.167	Otolemur_garnettii
ENSGMOG00000011391	srp54	100	90.167	ENSOARG00000007160	SRP54	95	90.167	Ovis_aries
ENSGMOG00000011391	srp54	100	90.167	ENSPPAG00000017434	SRP54	98	89.509	Pan_paniscus
ENSGMOG00000011391	srp54	100	89.121	ENSPPRG00000014047	SRP54	98	88.393	Panthera_pardus
ENSGMOG00000011391	srp54	100	89.958	ENSPTIG00000000744	SRP54	91	89.958	Panthera_tigris_altaica
ENSGMOG00000011391	srp54	100	90.167	ENSPTRG00000006259	FAM177A1	98	89.509	Pan_troglodytes
ENSGMOG00000011391	srp54	100	90.167	ENSPANG00000023853	SRP54	98	89.509	Papio_anubis
ENSGMOG00000011391	srp54	100	92.469	ENSPKIG00000001953	srp54	95	92.469	Paramormyrops_kingsleyae
ENSGMOG00000011391	srp54	100	89.958	ENSPSIG00000006476	SRP54	95	89.958	Pelodiscus_sinensis
ENSGMOG00000011391	srp54	91	88.940	ENSPMGG00000004127	srp54	94	88.940	Periophthalmus_magnuspinnatus
ENSGMOG00000011391	srp54	100	77.615	ENSPEMG00000019634	-	95	77.615	Peromyscus_maniculatus_bairdii
ENSGMOG00000011391	srp54	100	85.146	ENSPMAG00000006078	-	95	85.146	Petromyzon_marinus
ENSGMOG00000011391	srp54	100	90.167	ENSPCIG00000016175	SRP54	95	90.167	Phascolarctos_cinereus
ENSGMOG00000011391	srp54	100	92.887	ENSPFOG00000008870	srp54	95	92.887	Poecilia_formosa
ENSGMOG00000011391	srp54	100	92.887	ENSPLAG00000009889	srp54	95	92.887	Poecilia_latipinna
ENSGMOG00000011391	srp54	100	92.887	ENSPMEG00000008601	srp54	95	92.887	Poecilia_mexicana
ENSGMOG00000011391	srp54	100	92.887	ENSPREG00000004505	srp54	95	92.887	Poecilia_reticulata
ENSGMOG00000011391	srp54	100	85.146	ENSPPYG00000005739	SRP54	95	85.146	Pongo_abelii
ENSGMOG00000011391	srp54	100	86.402	ENSPCAG00000006268	SRP54	95	86.402	Procavia_capensis
ENSGMOG00000011391	srp54	100	88.100	ENSPCOG00000022473	SRP54	95	88.100	Propithecus_coquereli
ENSGMOG00000011391	srp54	61	95.588	ENSPVAG00000010056	SRP54	76	95.588	Pteropus_vampyrus
ENSGMOG00000011391	srp54	100	92.469	ENSPNYG00000009717	srp54	95	92.469	Pundamilia_nyererei
ENSGMOG00000011391	srp54	100	92.469	ENSPNAG00000008544	srp54	95	92.469	Pygocentrus_nattereri
ENSGMOG00000011391	srp54	100	89.958	ENSRNOG00000032776	Srp54a	95	89.958	Rattus_norvegicus
ENSGMOG00000011391	srp54	100	90.167	ENSRROG00000041292	SRP54	98	89.509	Rhinopithecus_roxellana
ENSGMOG00000011391	srp54	85	47.942	YPR088C	SRP54	90	43.927	Saccharomyces_cerevisiae
ENSGMOG00000011391	srp54	99	90.084	ENSSBOG00000035145	SRP54	100	90.084	Saimiri_boliviensis_boliviensis
ENSGMOG00000011391	srp54	72	87.464	ENSSHAG00000000671	SRP54	100	87.464	Sarcophilus_harrisii
ENSGMOG00000011391	srp54	100	92.469	ENSSFOG00015013920	srp54	95	92.469	Scleropages_formosus
ENSGMOG00000011391	srp54	100	86.417	ENSSMAG00000002441	srp54	95	86.417	Scophthalmus_maximus
ENSGMOG00000011391	srp54	100	92.050	ENSSDUG00000018586	srp54	95	92.050	Seriola_dumerili
ENSGMOG00000011391	srp54	100	92.259	ENSSLDG00000010476	srp54	95	92.259	Seriola_lalandi_dorsalis
ENSGMOG00000011391	srp54	100	90.167	ENSSARG00000002744	SRP54	95	90.167	Sorex_araneus
ENSGMOG00000011391	srp54	100	90.167	ENSSPUG00000013101	SRP54	95	90.167	Sphenodon_punctatus
ENSGMOG00000011391	srp54	100	92.678	ENSSPAG00000002354	srp54	95	92.678	Stegastes_partitus
ENSGMOG00000011391	srp54	100	90.167	ENSSSCG00000001955	SRP54	95	90.167	Sus_scrofa
ENSGMOG00000011391	srp54	94	89.062	ENSTGUG00000011945	-	90	89.062	Taeniopygia_guttata
ENSGMOG00000011391	srp54	100	91.632	ENSTRUG00000007057	srp54	95	91.632	Takifugu_rubripes
ENSGMOG00000011391	srp54	100	91.004	ENSTNIG00000002589	srp54	95	91.004	Tetraodon_nigroviridis
ENSGMOG00000011391	srp54	94	81.208	ENSTBEG00000011409	SRP54	100	81.208	Tupaia_belangeri
ENSGMOG00000011391	srp54	100	90.586	ENSTTRG00000000928	SRP54	95	90.586	Tursiops_truncatus
ENSGMOG00000011391	srp54	100	90.167	ENSUMAG00000011234	SRP54	95	90.167	Ursus_maritimus
ENSGMOG00000011391	srp54	94	89.286	ENSVPAG00000005668	SRP54	95	89.286	Vicugna_pacos
ENSGMOG00000011391	srp54	100	90.167	ENSVVUG00000019962	SRP54	95	90.167	Vulpes_vulpes
ENSGMOG00000011391	srp54	100	74.380	ENSXETG00000012290	srp54	95	74.897	Xenopus_tropicalis
ENSGMOG00000011391	srp54	87	91.847	ENSXCOG00000004658	srp54	91	91.847	Xiphophorus_couchianus
ENSGMOG00000011391	srp54	100	92.887	ENSXMAG00000018315	srp54	95	92.887	Xiphophorus_maculatus